View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13979_low_7 (Length: 321)
Name: NF13979_low_7
Description: NF13979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13979_low_7 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 321
Target Start/End: Original strand, 45274784 - 45275090
Alignment:
| Q |
15 |
agcagagatccatgaagggtgtccttgatcatcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgc |
114 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274784 |
agcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgc |
45274883 |
T |
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| Q |
115 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaaccgcggtgaccttttgtacgctgtccaaactctgaacatggaattgctctttgattttct |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274884 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaaccgcggtgatcttttgtacgctgtccaaactctgaacatggaattgctctttgattttct |
45274983 |
T |
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| Q |
215 |
tctcaccatcatttgcatcgtcaaatccttccatacaggcttgtctgtaggatataactgcactcaaccaattccccatatcagcagtttggtcatgaac |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45274984 |
tctcaccatcatttgcatcgtcaaatccttccatacaggcttgtctgtaggatatgactgcactcaaccaattcctcatatcagcagtttggtcatgaac |
45275083 |
T |
|
| Q |
315 |
agtttga |
321 |
Q |
| |
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|| |||| |
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| T |
45275084 |
agcttga |
45275090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 45283028 - 45283331
Alignment:
| Q |
18 |
agagatccatgaagggtgtccttgatcatcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgctgg |
117 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
45283028 |
agagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctgg |
45283127 |
T |
|
| Q |
118 |
aggatgtcggacaaaccagtcacaatgtcaagggcaaccgcggtgaccttttgtacgctgtccaaactctgaacatggaattgctctttgattttcttct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
45283128 |
aggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttct |
45283227 |
T |
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| Q |
218 |
caccatcatttgcatcgtcaaatccttccatacaggcttgtctgtaggatataactgcactcaaccaattccccatatcagcagtttggtcatgaacagt |
317 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
45283228 |
caccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaattcctcatatcagcgatttggtcatgaacagc |
45283327 |
T |
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| Q |
318 |
ttga |
321 |
Q |
| |
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|||| |
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| T |
45283328 |
ttga |
45283331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 45271254 - 45271552
Alignment:
| Q |
18 |
agagatccatgaagggtgtccttgatcatcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgctgg |
117 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
45271254 |
agagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaagttgaattgctgg |
45271353 |
T |
|
| Q |
118 |
aggatgtcggacaaaccagtcacaatgtcaagggcaaccgcggtgaccttttgtacgctgtccaaactctgaacatggaattgctctttgattttcttct |
217 |
Q |
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|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| |
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| T |
45271354 |
aggatgtcagacaaaccagtcacaatgtcaagggcaacggctgtgaccttttgtacgctgtacaaactctgaacatggaattgctccttgatcttcttct |
45271453 |
T |
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| Q |
218 |
caccatcatttgcatcgtcaaatccttccatacaggcttgtctgtaggatataactgcactcaaccaattccccatatcagcagtttggtcatgaacag |
316 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||| || |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45271454 |
caccatcatttgcatcgtcaaatccttccatacaaccttgtttgtaagagataactgcactcaaccaattcctcatatcagcagtttggtcatgaacag |
45271552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 321
Target Start/End: Original strand, 45294413 - 45294719
Alignment:
| Q |
15 |
agcagagatccatgaagggtgtccttgatcatcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgc |
114 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45294413 |
agcagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgc |
45294512 |
T |
|
| Q |
115 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaaccgcggtgaccttttgtacgctgtccaaactctgaacatggaattgctctttgattttct |
214 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||| ||||| |||| |
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| T |
45294513 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttct |
45294612 |
T |
|
| Q |
215 |
tctcaccatcatttgcatcgtcaaatccttccatacaggcttgtctgtaggatataactgcactcaaccaattccccatatcagcagtttggtcatgaac |
314 |
Q |
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||||||| |||||| |||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
45294613 |
tctcaccgtcattttcatcgtcaaatccttccatacaagcttgtctgtaagagataactgcactcaaccaattcctcatatcagcggtttggtcatgaac |
45294712 |
T |
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| Q |
315 |
agtttga |
321 |
Q |
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|| |||| |
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| T |
45294713 |
agcttga |
45294719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 321
Target Start/End: Original strand, 45303373 - 45303679
Alignment:
| Q |
15 |
agcagagatccatgaagggtgtccttgatcatcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgc |
114 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45303373 |
agcagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgc |
45303472 |
T |
|
| Q |
115 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaaccgcggtgaccttttgtacgctgtccaaactctgaacatggaattgctctttgattttct |
214 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||| ||||| |||| |
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| T |
45303473 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttct |
45303572 |
T |
|
| Q |
215 |
tctcaccatcatttgcatcgtcaaatccttccatacaggcttgtctgtaggatataactgcactcaaccaattccccatatcagcagtttggtcatgaac |
314 |
Q |
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||||||| |||||| |||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
45303573 |
tctcaccgtcattttcatcgtcaaatccttccatacaagcttgtctgtaagagataactgcactcaaccaattcctcatatcagcggtttggtcatgaac |
45303672 |
T |
|
| Q |
315 |
agtttga |
321 |
Q |
| |
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|| |||| |
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|
| T |
45303673 |
agcttga |
45303679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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