View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13979_low_8 (Length: 293)
Name: NF13979_low_8
Description: NF13979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13979_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 25563020 - 25563295
Alignment:
| Q |
1 |
atgatttctcaccaaatgcaatacatgctcaacaaaaccattaatatgttccctgttctctggttattaatatggttggaagttccaccatttgaccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25563020 |
atgatttctcaccaaatgcaatacatgctcaacaaaactat-aatatgttccctgttctctggttattaatatggttggaagttccaccatttgaccaaa |
25563118 |
T |
|
| Q |
101 |
agctcgggtataataataaatcatattcctctcggagaccagagaatccatgatatactatcgatggcaggtttaataccattttaggtatgaaaattat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25563119 |
agctcgggtataataataaatcatattcctctcggagaccagagaatccatgatatactatcgatggcaggtttaataccattttaggtatgaaaattat |
25563218 |
T |
|
| Q |
201 |
acgcaatgaagattcagcctcaatatacttgacatcataaacttcaaacaatattactctacatagctataagttgt |
277 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25563219 |
acgcaatgaagattcagcttcaatatacttgacatcataaacttcaaacaatattactctacatagctataagttgt |
25563295 |
T |
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