View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1397_high_2 (Length: 466)
Name: NF1397_high_2
Description: NF1397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1397_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 43 - 437
Target Start/End: Original strand, 52919360 - 52919754
Alignment:
| Q |
43 |
caatccaactacatttttctatttgacatctagcaagcctgtcttcaatacatccttataattaataattgtttaaatttgacaaattttatcatttagt |
142 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52919360 |
caatccaactacatttttctatttgacatctagccagcctgtcttcaatacatccttataattaataattgtttaaatttgacaaattttatcatatagt |
52919459 |
T |
|
| Q |
143 |
attcctttctaatgaattagataattgatataattctttaaacaagtccaacatctaataaacatctattttcgtacatttagagcaaatatgcattata |
242 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52919460 |
atgcccttctaatgaattagataattgatataattctttaaacaagtccaacatctaataaacatctattttcgtacaattagagcaaatatgcattata |
52919559 |
T |
|
| Q |
243 |
ttctagttgtaccttatcatctaagtggctagcaagaactctacctattgcaaaattgtgccattcatatattctacaaaagttgttcaaaatccaaata |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52919560 |
ttctagttgtaccttatcatctaagtggctagcaagaactctacctattgcaaaattgtgccattcatatattctacaaaagttgttcaaaatccaaata |
52919659 |
T |
|
| Q |
343 |
tctgatgattgttcacagtgtaaattaggaaaaggtatgccaagaacctgctcaaaagaacaaatgagtagtcctcaagcccaatctcacagagg |
437 |
Q |
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||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52919660 |
tctgatgattgttcaaagtgtatatcaggaaaaggtatgccaagaacctgctcaaaagaacaaatgagtagtcctcaagcccaatctcacagagg |
52919754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 21498934 - 21498970
Alignment:
| Q |
13 |
agaaaagtggtcaaaatttggagtatgacacaatcca |
49 |
Q |
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||||||||||||||||||||| ||||||||| ||||| |
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| T |
21498934 |
agaaaagtggtcaaaatttggggtatgacactatcca |
21498970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 43 - 437
Target Start/End: Original strand, 35231093 - 35231486
Alignment:
| Q |
43 |
caatccaactacatttttctatttgacatctagcaagcctgtcttcaatacatccttataattaataattgtttaaatttgacaaattttatcatttagt |
142 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| |||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| |||| |
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| T |
35231093 |
caatccaactacatttttctcgt-gacatctaggcagcctgtcttcaatccatccttataattaacaattctttaaatttgacaaattttatcatatagt |
35231191 |
T |
|
| Q |
143 |
attcctttctaatgaattagataattgatataattctttaaacaagtccaacatctaataaacatctattttcgtacatttagagcaaatatgcattata |
242 |
Q |
| |
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|| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35231192 |
atgcccttctaatgaattagataattgatataattctttaaacaagtccaacatctattaaacatctattttcgtacaattagagcaaatatgcattata |
35231291 |
T |
|
| Q |
243 |
ttctagttgtaccttatcatctaagtggctagcaagaactctacctattgcaaaattgtgccattcatatattctacaaaagttgttcaaaatccaaata |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
35231292 |
ttctagttgtaccttatcatctaagtggctagcaagaactctacctattgcaaaattgtgccattcatatattctagaaaagttgttcaaaatccaaata |
35231391 |
T |
|
| Q |
343 |
tctgatgattgttcacagtgtaaattaggaaaaggtatgccaagaacctgctcaaaagaacaaatgagtagtcctcaagcccaatctcacagagg |
437 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35231392 |
tctgatgattgttcaaagtgtaaattaggaaaaggtatgccaagaacctgctcaaaagaacaaatgagtagtcctcaagcccaatctcacagagg |
35231486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 38168393 - 38168422
Alignment:
| Q |
13 |
agaaaagtggtcaaaatttggagtatgaca |
42 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
38168393 |
agaaaagtggtcaaaatttggagtatgaca |
38168422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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