View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1397_high_5 (Length: 243)
Name: NF1397_high_5
Description: NF1397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1397_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 29024113 - 29024043
Alignment:
| Q |
1 |
aactggggagaagatgaaaataatgatgagaagacgt-ttttcacattcttatcatcttagagaactccac |
70 |
Q |
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| T |
29024113 |
aacttgggagaagatgaaaataatgatgagaagacgttttttcacattcttatcatcttagagaactccac |
29024043 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 36066717 - 36066654
Alignment:
| Q |
7 |
ggagaagatgaaaataatgatgagaagacgtttttcacattcttatcatcttagagaactccac |
70 |
Q |
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|||||||||||||| ||||||||||| || || |||||||||||| |||| ||||||||||| |
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| T |
36066717 |
ggagaagatgaaaacaatgatgagaaagcgattggcacattcttatcttctttgagaactccac |
36066654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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