View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1397_low_4 (Length: 402)
Name: NF1397_low_4
Description: NF1397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1397_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 30 - 391
Target Start/End: Original strand, 34619680 - 34620045
Alignment:
| Q |
30 |
tcataatcatatatcataaatagaaacggcaaaacaaacgcaaaaagtagtctgcttcctttgagttgtttaagaattaataaggtcatataatcacttt |
129 |
Q |
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| T |
34619680 |
tcataatcatatatcataaatagaaacggcaaaacaaacgcaaaaagtagtctgcttcctttgagttgtttaagaatta-taaggtcatataatcacttt |
34619778 |
T |
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| Q |
130 |
taagctaaaa-aagctgttttcattctgtaatcaacgagtcactaaatgtcaaacacaaacatttacaaagttattttgcaataattctaaatcctaaag |
228 |
Q |
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| T |
34619779 |
taagctaaaaaaagctgttttcattctgtaatcaacgagtcactaaatgtcaaacacaaacgtttacaaagttattttgcaataattctaaatcctaaag |
34619878 |
T |
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| Q |
229 |
ggaatatattttcctcaattgcaccctatattatcattgttaattacctttctgacttgggcttgtaattatgtacatgtttaagcggt----gtttggc |
324 |
Q |
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| T |
34619879 |
ggaatatattttcctcaattgcaccctatattatcattgttaattacctttctgacttaggcttgtaattatgtacatgtttaagaggttttaatttggc |
34619978 |
T |
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| Q |
325 |
ctaatgcttcattattcccaatgacggtgagaatctatctttaacacatttcatcattgtctttcat |
391 |
Q |
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| T |
34619979 |
ctaatgcttcattattcccaatgacggtgagaatctatctttaacacatttcatcattgtctttcat |
34620045 |
T |
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Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 203 - 372
Target Start/End: Complemental strand, 51054757 - 51054589
Alignment:
| Q |
203 |
ttttgcaataattctaaatcctaaagggaatatattttc-ctcaattgcaccctatattatcattgttaattacctttctgacttgggcttgtaattatg |
301 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||| | | || ||||||||||| ||||||||||||| |||||||||||| |
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| T |
51054757 |
ttttgcaataattctaaattctaaagggaatatattttttctcaattgcaccttttttttacattgttaattgcctttctgacttgtgcttgtaattata |
51054658 |
T |
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| Q |
302 |
tacatgtttaagcggtgtttggcctaatgcttcattattcccaatgacggtgagaatctatctttaacaca |
372 |
Q |
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|| |||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
51054657 |
ta--tgtttaagaggtttttggcctaatgcttcattattgccaatgacggtgagaatctatctttaacaca |
51054589 |
T |
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