View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1397_low_6 (Length: 251)
Name: NF1397_low_6
Description: NF1397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1397_low_6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 51403091 - 51403312
Alignment:
| Q |
30 |
aaaatgttcaacgcagggaggaatactgcttggaccatcagcaataggtcgaagtgagaaattcctacacacagttttcccaaagagaagcttaacagtc |
129 |
Q |
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| T |
51403091 |
aaaatgttcaatgcagggaggaatactgcttggaccatcagcaataggtcgaagcgagaaattcctacacacagttttcccaaagagaagcttaacagtc |
51403190 |
T |
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| Q |
130 |
ctagacacactagccaacattggtcttttgttcttcttattcctagtaggtcttgaactcgacatgcgttcaatccgtagaacaggtaaaaaagccttag |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51403191 |
ctagacacactagccaacattggtcttttgttcttcttattcctagtaggtcttgaactcgacatgcgttcaatccgtagaacaggtaaaaaagccttag |
51403290 |
T |
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| Q |
230 |
caattgccctctgtggaatcac |
251 |
Q |
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|||||||||| ||||||||||| |
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| T |
51403291 |
caattgccctttgtggaatcac |
51403312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 106 - 228
Target Start/End: Complemental strand, 29983660 - 29983538
Alignment:
| Q |
106 |
ttcccaaagagaagcttaacagtcctagacacactagccaacattggtcttttgttcttcttattcctagtaggtcttgaactcgacatgcgttcaatcc |
205 |
Q |
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||||| || |||||||||||||| || || ||||||||||||||||| || | ||||||||||| ||||||||||||||||||||||||||||| || | |
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| T |
29983660 |
ttccctaaaagaagcttaacagttcttgatacactagccaacattggcctgctattcttcttatttctagtaggtcttgaactcgacatgcgttcgatac |
29983561 |
T |
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| Q |
206 |
gtagaacaggtaaaaaagcctta |
228 |
Q |
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| T |
29983560 |
gcaaaacaggttcaaaagcctta |
29983538 |
T |
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