View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13980_high_1 (Length: 416)
Name: NF13980_high_1
Description: NF13980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13980_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 70 - 408
Target Start/End: Original strand, 4985817 - 4986155
Alignment:
| Q |
70 |
ctgagaagatattttattcttgattgtgtatcaaaatttgtttaaattgcggcacaaactcttgtaattttaatgtaaatataggacactacttgccgac |
169 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4985817 |
ctgagaagatattttattcttgattgtatatcaaaatttgtttaaattgcggcacaaactcttgtaattttaatgtaaatataggacactacttgccgaa |
4985916 |
T |
|
| Q |
170 |
agttgaaaattttgagctccaaagtctcaatcaaatttcaaacctaactgttgacaatgaactttgtaggtgagattccttgagattatggcaactgtta |
269 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4985917 |
agtagaaaattttgagctccaaagtctcaatcaaatttcaaacctaactgttgacaatgaactttgtcggtgagattccttgagattatggcaactgtta |
4986016 |
T |
|
| Q |
270 |
tgtcataaaaaaggtttnnnnnnntaacagtctcatttttaaggttagtgtgtcttaccatatttttgcatgatgttaatgtccccattttaacacattg |
369 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4986017 |
tgtcataaaaaaggtttaaaaaaataacagtctcatttttaaggttagtgtgtcttaccatatttttgcatgatgttaatgtccccattttaacacattg |
4986116 |
T |
|
| Q |
370 |
ttatttgttgctcttattagctctaaattcttgtgtcag |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4986117 |
ttatttgttgctcttattagctctaaattcttgtgtcag |
4986155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University