View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13980_high_2 (Length: 453)

Name: NF13980_high_2
Description: NF13980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13980_high_2
NF13980_high_2
[»] chr4 (4 HSPs)
chr4 (61-439)||(18343719-18344099)
chr4 (270-400)||(36638870-36639000)
chr4 (1-53)||(18343633-18343685)
chr4 (185-219)||(36639056-36639090)
[»] scaffold0002 (3 HSPs)
scaffold0002 (96-439)||(163237-163589)
scaffold0002 (1-53)||(163684-163736)
scaffold0002 (61-96)||(163610-163645)
[»] chr1 (1 HSPs)
chr1 (123-430)||(9857643-9857946)
[»] chr6 (2 HSPs)
chr6 (1-53)||(31058812-31058864)
chr6 (61-110)||(31058724-31058773)
[»] scaffold0330 (2 HSPs)
scaffold0330 (96-141)||(13433-13478)
scaffold0330 (61-96)||(13377-13412)
[»] chr3 (1 HSPs)
chr3 (270-318)||(31878210-31878258)


Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 61 - 439
Target Start/End: Original strand, 18343719 - 18344099
Alignment:
Q  61 tttaaaatagaatacaatcgcgggattttttgacatattagaaatttgtatatcttgctttgatatagaaccaaatatggattcttatagaccttttttg 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18343719 tttaaaatagaatacaatcgcgggattttttgacatattagaaatttgtatatcttgctttgatatagaaccaaatatggattcttatagaccatttttg 18343818  T
Q  161 ctatccatatctaactagataatgttgttttgatataaggttctaacgaatccatatttctcnnnnnnnnnn--attatcatattggcaaaaatttctaa 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||            ||||||||||||||||||||||||||    
T  18343819 ctatccatatctaactagataatgttgttttgatataaggttctaacgaatccatatttgtcttttttttttttattatcatattggcaaaaatttctaa 18343918  T
Q  259 attcnnnnnnntccacattttcgcgggcgaatatttactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatga 358  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343919 attcaaaaaaatccacattttcgcgggcgaatatttactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatga 18344018  T
Q  359 attcttagttccgtccgccatcccatctaacgaatcagtaagattatgaaatttaatataatcttaggtattcacaggttc 439  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18344019 attcttagttccgtccgccatcccatctaatgaatcagtaagattatgaaatttaatataatcttaggtattcacaggttc 18344099  T

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Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 270 - 400
Target Start/End: Complemental strand, 36639000 - 36638870
Alignment:
Q  270 tccacattttcgcgggcgaatatttactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattcttagttc 369  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36639000 tccacattttcgcgggcgaatattcactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattcttagttc 36638901  T
Q  370 cgtccgccatcccatctaacgaatcagtaag 400  Q
    ||||||||||||||||||| |||| ||||||    
T  36638900 cgtccgccatcccatctaatgaattagtaag 36638870  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 18343633 - 18343685
Alignment:
Q  1 attttcacctcatacggctcctcgcgaataaatcgattcaaaaatatttaacc 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343633 attttcacctcatacggctcctcgcgaataaatcgattcaaaaatatttaacc 18343685  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 36639090 - 36639056
Alignment:
Q  185 ttgttttgatataaggttctaacgaatccatattt 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  36639090 ttgttttgatataatgttctaacgaatccatattt 36639056  T

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Target: scaffold0002 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 96 - 439
Target Start/End: Complemental strand, 163589 - 163237
Alignment:
Q  96 tattagaaatttgtatatcttgctttgatatagaaccaaatatggattcttatagaccttttttgctatccatatctaactagataatgttgttttgata 195  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  163589 tattagaaatttgtatatcttgcttggatataaaaccaaatatggatttttatagaccatttttgctatccatatctaactagataatgttgttttgata 163490  T
Q  196 taaggttctaacgaatccatatttctcnnnnnnnnnn---attatcatat----tggcaaaaatttctaaattcnnnnnnn-tccacattttcgcgggcg 287  Q
    |||||||||||||||||||||||| ||             ||||||||||    |||||||||||||||||||         ||||||||||||||||||    
T  163489 taaggttctaacgaatccatatttgtctttttttttttttattatcatatatattggcaaaaatttctaaattaaaaaaaaatccacattttcgcgggcg 163390  T
Q  288 aatattt-actctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattcttagttccgtccgccatcccatct 386  Q
    ||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  163389 aatattttactctttcattataaatttaagatgtgatgttggattagtccacaactcctcaaaaaataatgaattcttagttccgtccaccatcccatct 163290  T
Q  387 aacgaatcagtaagattatgaaatttaatataatcttaggtattcacaggttc 439  Q
    || ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  163289 aatgaatcagtaagattatgaaatttaatataatcttaagtattcacaagttc 163237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 163736 - 163684
Alignment:
Q  1 attttcacctcatacggctcctcgcgaataaatcgattcaaaaatatttaacc 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  163736 attttcacctcatacggctcctcgcgaataaatcgattcaaaaatatttaacc 163684  T

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Target: scaffold0002; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 96
Target Start/End: Complemental strand, 163645 - 163610
Alignment:
Q  61 tttaaaatagaatacaatcgcgggattttttgacat 96  Q
    |||||||||||||| |||||||||||||||||||||    
T  163645 tttaaaatagaatagaatcgcgggattttttgacat 163610  T

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Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 123 - 430
Target Start/End: Complemental strand, 9857946 - 9857643
Alignment:
Q  123 atatagaaccaaatatggattcttatagaccttttttgctatccatatctaactagataatgttgttttgatataaggttctaacgaatccatatttctc 222  Q
    ||||||||| |||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||  |||||||||  ||||||||||| ||    
T  9857946 atatagaacgaaatatggattcgtatagaccatttttgctatc-atgtctaactagataatgttgttttgata--aggttctaaaaaatccatatttgtc 9857850  T
Q  223 nnnnnnnnnnattatcatattggcaaaaatttctaaattcnnnnnnntccacattttcgcgggcgaatattt-actctttcattataaatttaagatgta 321  Q
              |  ||||||||||||||||||| |||||||       ||||||||||| |  | |||||||| |||||||||||||||||||||||||||    
T  9857849 tttttttttta--atcatattggcaaaaatttataaattcaaaaaaatccacattttcacatgtgaatattttactctttcattataaatttaagatgta 9857752  T
Q  322 atgttgggttagtccacaactcctcaaaaaataatgaattcttagttccgtccgccatcccatctaacgaatcagtaagattatgaaatttaatataatc 421  Q
    ||||  | |||| ||||||||||||||||||||||||||||||||||  |||| |||||| |||||| |||||| ||||||||| ||||||||||||||     
T  9857751 atgtcagattagcccacaactcctcaaaaaataatgaattcttagttttgtccaccatccaatctaatgaatcaataagattattaaatttaatataatt 9857652  T
Q  422 ttaggtatt 430  Q
    | |||||||    
T  9857651 tgaggtatt 9857643  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 31058864 - 31058812
Alignment:
Q  1 attttcacctcatacggctcctcgcgaataaatcgattcaaaaatatttaacc 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31058864 attttcacctcatacggctcctcgcgaataaatcgattcaaaaatatttaacc 31058812  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 31058773 - 31058724
Alignment:
Q  61 tttaaaatagaatacaatcgcgggattttttgacatattagaaatttgta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31058773 tttaaaatagaatacaatcgcgggattttttgacatattagaaatttgta 31058724  T

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Target: scaffold0330 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 13433 - 13478
Alignment:
Q  96 tattagaaatttgtatatcttgctttgatatagaaccaaatatgga 141  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  13433 tattagaaatttgtatattttgctttgatatagaaccaaatatgga 13478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 96
Target Start/End: Original strand, 13377 - 13412
Alignment:
Q  61 tttaaaatagaatacaatcgcgggattttttgacat 96  Q
    |||||||||||||||||||||| |||||||||||||    
T  13377 tttaaaatagaatacaatcgcgagattttttgacat 13412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 31878258 - 31878210
Alignment:
Q  270 tccacattttcgcgggcgaatatttactctttcattataaatttaagat 318  Q
    |||||||||| |||  |||||| ||||||||| ||||||||||||||||    
T  31878258 tccacatttttgcgaccgaataattactctttaattataaatttaagat 31878210  T

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