View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13981_high_2 (Length: 531)

Name: NF13981_high_2
Description: NF13981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13981_high_2
NF13981_high_2
[»] chr7 (3 HSPs)
chr7 (366-514)||(27658121-27658269)
chr7 (91-204)||(33602421-33602528)
chr7 (229-288)||(27656844-27656903)
[»] chr5 (5 HSPs)
chr5 (366-514)||(37605795-37605941)
chr5 (378-505)||(33360981-33361104)
chr5 (378-505)||(5742432-5742556)
chr5 (225-288)||(37606029-37606092)
chr5 (226-268)||(30891764-30891806)
[»] scaffold0856 (1 HSPs)
scaffold0856 (378-505)||(1228-1351)
[»] chr6 (2 HSPs)
chr6 (378-505)||(18085257-18085380)
chr6 (225-288)||(31559483-31559546)
[»] chr4 (1 HSPs)
chr4 (226-263)||(7453567-7453604)


Alignment Details
Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 366 - 514
Target Start/End: Original strand, 27658121 - 27658269
Alignment:
Q  366 gtttcgttttccttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct 465  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27658121 gtttcgttttccttctctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct 27658220  T
Q  466 ttgtacagtaccaccctctcatgctattttcggtcactccgcctgtctc 514  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27658221 ttgtacagtgccaccctctcatgctattttcggtcactccgcctgtctc 27658269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 33602421 - 33602528
Alignment:
Q  91 aaatgaaatatggtttgttatatggcggcaaaagtgaataagaaacggttagaagtatgagctggcaaatagcgaaatagtgaaatgaaatattaaacga 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       ||||||||||||||||||||    
T  33602421 aaatgaaatatggtttgttatatggcggcaaaagtgaataagaaacgattagaagtatgagctggcaaatagc------atgaaatgaaatattaaacga 33602514  T
Q  191 ttaaatatgttttt 204  Q
    ||||||||||||||    
T  33602515 ttaaatatgttttt 33602528  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 229 - 288
Target Start/End: Original strand, 27656844 - 27656903
Alignment:
Q  229 aatgataagtaaacacaaaaatacaaacacaaaaatgacaccatacactattactcaata 288  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||| || |||||||    
T  27656844 aatgataagtaaacacaaaaatacaaacacaaaaatgataccatagactgttcctcaata 27656903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 366 - 514
Target Start/End: Complemental strand, 37605941 - 37605795
Alignment:
Q  366 gtttcgttttccttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct 465  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||    
T  37605941 gtttcgttttccttccctctttctgaatcactcatttcctatgagcaagaaaaaatcatctttcattcactcataggttctcgtcactccttcttcatct 37605842  T
Q  466 ttgtacagtaccaccctctcatgctattttcggtcactccgcctgtctc 514  Q
    ||||||||| |||||  |||||||||||||||||| |||| ||| ||||    
T  37605841 ttgtacagtgccacc--ctcatgctattttcggtcgctccacctatctc 37605795  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 378 - 505
Target Start/End: Complemental strand, 33361104 - 33360981
Alignment:
Q  378 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc 477  Q
    |||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  ||||||||||||   |||||||||||| |||| ||    
T  33361104 ttccctctttctgattcagtcatttcccattaccaagaacaaataatctttcattcactaataatttctcgtcactc---cttcatctttgtgcagtgcc 33361008  T
Q  478 accctctcatgctattttcggtcactcc 505  Q
    | |||||||||||| |||||||||||||    
T  33361007 agcctctcatgcta-tttcggtcactcc 33360981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 378 - 505
Target Start/End: Original strand, 5742432 - 5742556
Alignment:
Q  378 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc 477  Q
    |||||||| ||||||||||| ||||||||| || |||||| ||| ||||||||||||||  ||| | ||| ||||||   |||||||||||| |||| ||    
T  5742432 ttccctctttctgattcactaatttcctatgagaaagaactaatcatctttcattcactagtagttgctcatcactc---cttcatctttgtgcagtgcc 5742528  T
Q  478 accctctcatgctattttcggtcactcc 505  Q
    ||||||||||||||||| | ||||||||    
T  5742529 accctctcatgctatttccagtcactcc 5742556  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 37606092 - 37606029
Alignment:
Q  225 caggaatgataagtaaacacaaaaatacaaacacaaaaatgacaccatacactattactcaata 288  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  37606092 caggaatgataagtaaacacaataatacaaacacaaatatgacaccatacactgttactcaata 37606029  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 30891764 - 30891806
Alignment:
Q  226 aggaatgataagtaaacacaaaaatacaaacacaaaaatgaca 268  Q
    ||||||||||||| |||||||||||||||||||||||| ||||    
T  30891764 aggaatgataagtgaacacaaaaatacaaacacaaaaacgaca 30891806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0856 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 378 - 505
Target Start/End: Complemental strand, 1351 - 1228
Alignment:
Q  378 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc 477  Q
    |||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  ||||||||||||   |||||||||||| |||| ||    
T  1351 ttccctctttctgattcagtcatttcccatgatcaagaacaaatcatctttcattcactaataatttctcgtcactc---cttcatctttgtgcagtgcc 1255  T
Q  478 accctctcatgctattttcggtcactcc 505  Q
    | |||||||||||| |||||||||||||    
T  1254 agcctctcatgcta-tttcggtcactcc 1228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 378 - 505
Target Start/End: Complemental strand, 18085380 - 18085257
Alignment:
Q  378 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc 477  Q
    |||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  ||||||||||||   |||||||||||| |||| ||    
T  18085380 ttccctctttctgattcagtcatttcccattaccaagaacaaataatctttcattcactaataatttctcgtcactc---cttcatctttgtgcagtgcc 18085284  T
Q  478 accctctcatgctattttcggtcactcc 505  Q
    | |||||||||||| |||||||||||||    
T  18085283 agcctctcatgcta-tttcggtcactcc 18085257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 31559483 - 31559546
Alignment:
Q  225 caggaatgataagtaaacacaaaaatacaaacacaaaaatgacaccatacactattactcaata 288  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||||||||||| ||||||||||    
T  31559483 caggaatgataagtaaacacaataatacaaacataaatatgacaccatacactgttactcaata 31559546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 7453567 - 7453604
Alignment:
Q  226 aggaatgataagtaaacacaaaaatacaaacacaaaaa 263  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  7453567 aggaatgataagtgaacacaaaaatacaaacacaaaaa 7453604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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