View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13981_high_7 (Length: 263)

Name: NF13981_high_7
Description: NF13981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13981_high_7
NF13981_high_7
[»] chr7 (37 HSPs)
chr7 (82-247)||(33601999-33602166)
chr7 (129-247)||(33601382-33601500)
chr7 (129-239)||(17944323-17944434)
chr7 (129-239)||(30570911-30571022)
chr7 (129-239)||(39967899-39968010)
chr7 (129-239)||(48470023-48470134)
chr7 (159-236)||(11619141-11619218)
chr7 (132-239)||(420342-420450)
chr7 (129-236)||(19302546-19302650)
chr7 (130-239)||(27863705-27863815)
chr7 (159-239)||(21568475-21568555)
chr7 (163-231)||(38499901-38499969)
chr7 (129-223)||(48507701-48507797)
chr7 (129-207)||(46280284-46280363)
chr7 (159-233)||(39629943-39630017)
chr7 (129-236)||(19022568-19022676)
chr7 (132-239)||(34744010-34744118)
chr7 (129-224)||(45338428-45338523)
chr7 (169-230)||(20428494-20428555)
chr7 (128-239)||(45593505-45593618)
chr7 (163-239)||(5947198-5947274)
chr7 (159-239)||(28614443-28614523)
chr7 (129-239)||(20526425-20526536)
chr7 (133-223)||(38138475-38138566)
chr7 (131-188)||(4970824-4970882)
chr7 (150-239)||(19214386-19214476)
chr7 (147-224)||(28341052-28341129)
chr7 (177-233)||(28900903-28900960)
chr7 (129-237)||(39279941-39280050)
chr7 (129-201)||(39907782-39907855)
chr7 (129-188)||(7467588-7467648)
chr7 (128-171)||(20234461-20234505)
chr7 (163-239)||(34035931-34036007)
chr7 (198-238)||(34464202-34464242)
chr7 (162-238)||(43250681-43250756)
chr7 (129-188)||(43694601-43694661)
chr7 (159-239)||(45790406-45790485)
[»] chr8 (29 HSPs)
chr8 (129-239)||(26771244-26771355)
chr8 (129-236)||(10758240-10758347)
chr8 (129-233)||(27028810-27028915)
chr8 (128-237)||(38648329-38648439)
chr8 (129-233)||(18133635-18133740)
chr8 (128-239)||(25930533-25930646)
chr8 (159-239)||(12976223-12976302)
chr8 (182-239)||(8146362-8146419)
chr8 (163-239)||(31716207-31716283)
chr8 (129-239)||(35534593-35534702)
chr8 (176-239)||(10120783-10120846)
chr8 (129-239)||(16825518-16825628)
chr8 (129-239)||(29205787-29205897)
chr8 (134-239)||(30251434-30251540)
chr8 (129-239)||(37945576-37945686)
chr8 (131-239)||(29168037-29168146)
chr8 (163-239)||(35749550-35749626)
chr8 (161-237)||(43045707-43045783)
chr8 (159-237)||(16347200-16347279)
chr8 (176-239)||(35643968-35644031)
chr8 (129-187)||(42043377-42043436)
chr8 (150-239)||(9956794-9956884)
chr8 (131-188)||(6881908-6881965)
chr8 (198-239)||(28763417-28763458)
chr8 (205-238)||(40859763-40859796)
chr8 (163-239)||(1930049-1930125)
chr8 (132-239)||(10114471-10114579)
chr8 (191-239)||(10383927-10383974)
chr8 (137-188)||(11861791-11861843)
[»] chr3 (34 HSPs)
chr3 (128-239)||(53789441-53789553)
chr3 (129-237)||(30443872-30443981)
chr3 (129-235)||(20880455-20880562)
chr3 (137-239)||(18405811-18405914)
chr3 (129-239)||(39980708-39980819)
chr3 (129-239)||(21367646-21367757)
chr3 (129-239)||(36631031-36631142)
chr3 (129-235)||(402526-402633)
chr3 (159-242)||(901934-902017)
chr3 (129-239)||(20170502-20170613)
chr3 (129-239)||(46778171-46778281)
chr3 (129-221)||(35959454-35959547)
chr3 (129-236)||(584025-584133)
chr3 (159-239)||(24085318-24085398)
chr3 (147-227)||(46478684-46478767)
chr3 (149-239)||(22203429-22203520)
chr3 (128-209)||(47132309-47132391)
chr3 (131-239)||(37689212-37689319)
chr3 (191-236)||(49556900-49556945)
chr3 (129-232)||(4401026-4401127)
chr3 (129-239)||(20257514-20257626)
chr3 (163-239)||(34610786-34610862)
chr3 (129-196)||(44061046-44061114)
chr3 (163-239)||(45541585-45541660)
chr3 (163-239)||(46031004-46031080)
chr3 (129-231)||(13715560-13715665)
chr3 (162-233)||(28795839-28795910)
chr3 (196-239)||(31365168-31365211)
chr3 (129-186)||(30956659-30956717)
chr3 (129-186)||(30972471-30972529)
chr3 (163-201)||(33883768-33883806)
chr3 (163-231)||(466207-466275)
chr3 (178-242)||(944591-944655)
chr3 (191-235)||(26911627-26911671)
[»] chr2 (36 HSPs)
chr2 (129-236)||(41851514-41851622)
chr2 (129-239)||(45229491-45229601)
chr2 (131-236)||(43279512-43279616)
chr2 (167-241)||(33981140-33981214)
chr2 (129-239)||(41812072-41812181)
chr2 (129-236)||(15757641-15757750)
chr2 (129-231)||(12464461-12464564)
chr2 (129-239)||(18066107-18066218)
chr2 (129-239)||(32592566-32592676)
chr2 (129-239)||(39659489-39659600)
chr2 (129-215)||(41241136-41241223)
chr2 (147-236)||(26202025-26202115)
chr2 (132-236)||(5745768-5745873)
chr2 (163-239)||(41293143-41293219)
chr2 (129-239)||(1625879-1625990)
chr2 (137-239)||(20952342-20952445)
chr2 (158-239)||(750679-750760)
chr2 (143-231)||(9174808-9174897)
chr2 (162-223)||(20926516-20926577)
chr2 (129-237)||(40279176-40279285)
chr2 (159-239)||(7035547-7035627)
chr2 (175-239)||(13325596-13325660)
chr2 (164-239)||(16451133-16451208)
chr2 (129-239)||(26626852-26626963)
chr2 (156-239)||(33192209-33192291)
chr2 (129-226)||(33319807-33319903)
chr2 (177-231)||(2227194-2227248)
chr2 (181-239)||(43570446-43570503)
chr2 (162-239)||(1647249-1647325)
chr2 (167-239)||(7928278-7928351)
chr2 (128-231)||(12289774-12289879)
chr2 (169-242)||(31561719-31561792)
chr2 (163-239)||(4606939-4607015)
chr2 (169-241)||(36043924-36043996)
chr2 (129-224)||(39073684-39073780)
chr2 (129-239)||(41407280-41407392)
[»] chr5 (29 HSPs)
chr5 (129-239)||(16937863-16937974)
chr5 (129-239)||(16457959-16458070)
chr5 (128-239)||(10639931-10640043)
chr5 (159-239)||(12857685-12857765)
chr5 (129-236)||(39105443-39105551)
chr5 (130-237)||(40426745-40426853)
chr5 (129-239)||(29925820-29925931)
chr5 (175-239)||(3735138-3735202)
chr5 (159-239)||(12857318-12857398)
chr5 (132-241)||(32009674-32009785)
chr5 (159-236)||(37954696-37954773)
chr5 (137-236)||(43300865-43300965)
chr5 (148-239)||(1465000-1465091)
chr5 (133-227)||(25461074-25461169)
chr5 (162-239)||(42500222-42500298)
chr5 (129-239)||(2568636-2568747)
chr5 (163-239)||(7705978-7706054)
chr5 (176-239)||(34669709-34669773)
chr5 (176-232)||(35446082-35446138)
chr5 (163-242)||(9202725-9202804)
chr5 (163-217)||(4014426-4014480)
chr5 (163-237)||(7984983-7985057)
chr5 (159-233)||(39477893-39477967)
chr5 (206-239)||(2973524-2973557)
chr5 (163-238)||(3280696-3280771)
chr5 (150-214)||(13697764-13697828)
chr5 (176-236)||(32859703-32859762)
chr5 (176-236)||(32861875-32861934)
chr5 (167-239)||(42646685-42646757)
[»] chr4 (36 HSPs)
chr4 (129-235)||(17822849-17822956)
chr4 (129-239)||(50681069-50681180)
chr4 (134-239)||(21731636-21731742)
chr4 (158-239)||(29657393-29657474)
chr4 (159-239)||(30668347-30668426)
chr4 (165-239)||(13126556-13126630)
chr4 (137-233)||(55414406-55414503)
chr4 (137-239)||(22030190-22030293)
chr4 (131-236)||(7839344-7839450)
chr4 (129-242)||(53294091-53294205)
chr4 (140-239)||(50662718-50662818)
chr4 (159-239)||(54426053-54426133)
chr4 (134-231)||(2244032-2244133)
chr4 (162-237)||(25904205-25904280)
chr4 (163-242)||(55302263-55302342)
chr4 (159-236)||(26848-26924)
chr4 (137-239)||(46588053-46588157)
chr4 (135-209)||(16199991-16200066)
chr4 (132-228)||(41512633-41512730)
chr4 (159-224)||(46592204-46592269)
chr4 (176-236)||(21523585-21523644)
chr4 (159-239)||(39603150-39603230)
chr4 (191-239)||(41336802-41336850)
chr4 (131-237)||(2996554-2996660)
chr4 (133-231)||(35571619-35571718)
chr4 (163-232)||(1407970-1408040)
chr4 (165-231)||(24169279-24169345)
chr4 (129-239)||(37863935-37864043)
chr4 (169-239)||(55064855-55064925)
chr4 (129-232)||(25332753-25332858)
chr4 (129-233)||(54069403-54069508)
chr4 (129-188)||(15177233-15177293)
chr4 (175-239)||(20109611-20109675)
chr4 (191-239)||(43886112-43886159)
chr4 (191-239)||(49939931-49939979)
chr4 (191-239)||(56249566-56249613)
[»] chr1 (41 HSPs)
chr1 (137-239)||(49938734-49938837)
chr1 (162-239)||(15477578-15477655)
chr1 (129-236)||(24915034-24915142)
chr1 (129-239)||(3233995-3234106)
chr1 (129-239)||(14576634-14576744)
chr1 (129-239)||(17603364-17603475)
chr1 (130-242)||(37631536-37631649)
chr1 (129-239)||(30286499-30286611)
chr1 (129-242)||(27976574-27976697)
chr1 (130-227)||(51688685-51688782)
chr1 (159-239)||(2295106-2295186)
chr1 (131-234)||(51929524-51929628)
chr1 (129-239)||(473143-473253)
chr1 (129-239)||(13809977-13810088)
chr1 (164-239)||(37473418-37473493)
chr1 (128-239)||(27970274-27970387)
chr1 (129-239)||(6556950-6557062)
chr1 (159-239)||(29904761-29904841)
chr1 (136-227)||(42174841-42174933)
chr1 (129-239)||(41184630-41184741)
chr1 (129-226)||(41195187-41195284)
chr1 (159-239)||(5720935-5721015)
chr1 (159-239)||(5741616-5741696)
chr1 (130-226)||(27820330-27820427)
chr1 (166-239)||(38503445-38503518)
chr1 (137-239)||(40977383-40977487)
chr1 (129-214)||(47432075-47432160)
chr1 (132-239)||(2777874-2777981)
chr1 (163-239)||(7136979-7137054)
chr1 (148-239)||(37842336-37842427)
chr1 (134-224)||(36872716-36872806)
chr1 (131-185)||(39596578-39596633)
chr1 (162-236)||(27820180-27820253)
chr1 (132-201)||(49888749-49888819)
chr1 (183-236)||(36872299-36872352)
chr1 (132-239)||(1432497-1432605)
chr1 (159-239)||(3887612-3887692)
chr1 (163-239)||(10199389-10199464)
chr1 (163-239)||(10744315-10744390)
chr1 (163-235)||(45975704-45975776)
chr1 (163-239)||(51695475-51695551)
[»] chr6 (16 HSPs)
chr6 (131-233)||(34430447-34430550)
chr6 (163-233)||(9763574-9763644)
chr6 (129-237)||(9093538-9093647)
chr6 (132-239)||(20368161-20368268)
chr6 (163-239)||(31813175-31813251)
chr6 (129-239)||(2735048-2735159)
chr6 (132-214)||(6536597-6536680)
chr6 (129-199)||(6909892-6909963)
chr6 (161-239)||(35070630-35070708)
chr6 (129-242)||(24626274-24626380)
chr6 (132-232)||(35099019-35099119)
chr6 (129-236)||(18076175-18076290)
chr6 (167-239)||(31624108-31624179)
chr6 (176-239)||(9912171-9912234)
chr6 (129-201)||(837234-837307)
chr6 (182-239)||(848022-848079)
[»] scaffold0050 (1 HSPs)
scaffold0050 (163-247)||(58756-58840)
[»] scaffold0221 (1 HSPs)
scaffold0221 (163-242)||(22245-22324)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 82 - 247
Target Start/End: Complemental strand, 33602166 - 33601999
Alignment:
Q  82 gatctggaaaatcaacgtaacag--caatttcgttatagnnnnnnngtattaaattgtttttgtatttgctataagtggttttataagctatcttagaga 179  Q
    |||||||||||||||||||||||  ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33602166 gatctggaaaatcaacgtaacagagcaatttcgttatagtttttttgtattaaattgtttttgtatttgctataagtggttttataagctatcttagaga 33602067  T
Q  180 acttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagttttcgaaaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33602066 acttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagttttcgaaaa 33601999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 129 - 247
Target Start/End: Complemental strand, 33601500 - 33601382
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgt 228  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33601500 ttaaattatttttgtatttgctataagttgttttataagctatcttagagaacttatgaatttaagctgaaaaaagcttatgaaaagtgtcataagctgt 33601401  T
Q  229 tttcataagttttcgaaaa 247  Q
    ||||||||||| |||||||    
T  33601400 tttcataagttctcgaaaa 33601382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 17944434 - 17944323
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| || | ||||| ||||| ||||| |||||| || || ||||||| ||||||||||||| || |||||||||||||||||||||    
T  17944434 ttaaattgtttttgtatatgttgtaagttgttttcataagttatcttggataatttatgaaattaagctgaaaaaagcatatgaaaagtgtcataagctg 17944335  T
Q  228 ttttcataagtt 239  Q
    |||| |||||||    
T  17944334 tttttataagtt 17944323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 30571022 - 30570911
Alignment:
Q  129 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||| ||||||||| ||||||||| |  |||||||| |||  || ||||||||||||| ||||  ||||||| ||||||||||| ||||||||||||    
T  30571022 ttaaattatttttgtatatgctataagctatttttataacctacattggagaacttatgaaattaacatgaaaaaagcttatgaaaattgtcataagctg 30570923  T
Q  228 ttttcataagtt 239  Q
    |||||| |||||    
T  30570922 ttttcacaagtt 30570911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 39967899 - 39968010
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    |||||||||||| ||| | ||||||||| ||||| ||||||||||| |||||||| |||||  |||| ||||||  ||||||||| | || |||||||||    
T  39967899 ttaaattgttttcgtactagctataagttgttttcataagctatctgagagaactaatgaaaataagttgaaaacagcttatgaacaatgccataagctg 39967998  T
Q  228 ttttcataagtt 239  Q
    ||||||||||||    
T  39967999 ttttcataagtt 39968010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 48470023 - 48470134
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| |  ||||||| ||||| ||||||||| ||  | ||||||||||  |||||| ||||| ||||||||||| || |||||||||    
T  48470023 ttaaattgtttttgtatataatataagttgttttcataagctattttgaataacttatgaacataagctcaaaaaagcttatgaaaaatgccataagctg 48470122  T
Q  228 ttttcataagtt 239  Q
    ||||||||||||    
T  48470123 ttttcataagtt 48470134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 11619218 - 11619141
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataa 236  Q
    ||||||||||||  || ||||||||||||| ||||| ||||||| ||||||||||| ||||||||| |||||||||||    
T  11619218 ttttataagctacgttggagaacttatgaaattaagttgaaaaaagcttatgaaaattgtcataagttgttttcataa 11619141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 420342 - 420450
Alignment:
Q  132 aattgtttttgtatttgctataagtggtttta-taagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttt 230  Q
    |||||||||||||| |||||||||| ||||   |||||||| || |||||||||||||  |||| ||||||||||||  ||||| ||||||||  |||||    
T  420342 aattgtttttgtatatgctataagttgtttccgtaagctatattggagaacttatgaaaataagttgaaaaaggctttagaaaactgtcataaattgttt 420441  T
Q  231 tcataagtt 239  Q
    |||||||||    
T  420442 tcataagtt 420450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 236
Target Start/End: Complemental strand, 19302650 - 19302546
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| || ||||||| ||||| |||||||||     ||||||||||||  |||| ||||||| | ||||||||| ||||||||||||    
T  19302650 ttaaattgtttttgtatatgttataagttgtttttataagctata----agaacttatgaaaataagttgaaaaaagtttatgaaaattgtcataagctg 19302555  T
Q  228 ttttcataa 236  Q
    |||||||||    
T  19302554 ttttcataa 19302546  T

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Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 239
Target Start/End: Complemental strand, 27863815 - 27863705
Alignment:
Q  130 taaattgtttttgtatttgctataagtggtttta-taagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgt 228  Q
    |||||| | ||||||| |||||||||| |||||| ||| |||| ||||||||||||||||  |||||||||||| | || |||||| | ||  |||||||    
T  27863815 taaattttatttgtatatgctataagttgttttaataaactatattagagaacttatgaacataagctgaaaaaagtttttgaaaattttctcaagctgt 27863716  T
Q  229 tttcataagtt 239  Q
    |||||||||||    
T  27863715 tttcataagtt 27863705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 21568555 - 21568475
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||||||||| || ||||||||||| |  |||| ||||||  ||||||||||| ||| ||||||||||||||||||||    
T  21568555 ttttataagctatattggagaacttatggaactaagttgaaaagagcttatgaaaattgttataagctgttttcataagtt 21568475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 38499969 - 38499901
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgtttt 231  Q
    |||||| ||||| |||||||||||||  ||||||| |||| ||||||||||| ||||||||||||||||    
T  38499969 ataagcaatcttggagaacttatgaaaataagctggaaaaagcttatgaaaaatgtcataagctgtttt 38499901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 48507701 - 48507797
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatc-ttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataa 223  Q
    ||||||||||||||||| ||||||||   ||||| |||||| ||| |||||||||||||||| |||||||||||||  ||||| |||| ||||||||    
T  48507701 ttaaattgtttttgtatatgctataaactgttttcataagccatccttagagaacttatgaaattaagctgaaaaatacttataaaaaatgtcataa 48507797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 46280363 - 46280284
Alignment:
Q  129 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggctt 207  Q
    ||||||||||||||||| ||||||||| || ||||||||||||| || |||||||||||||  || ||||||||| ||||    
T  46280363 ttaaattgtttttgtatatgctataagctgtttttataagctatattggagaacttatgaaaataggctgaaaaaagctt 46280284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 39630017 - 39629943
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttca 233  Q
    |||| |||||||| ||  ||||||||||| | |||| ||||||| ||||||||||| ||||||||||||||||||    
T  39630017 ttttttaagctatattgaagaacttatgactataagttgaaaaaagcttatgaaaattgtcataagctgttttca 39629943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 236
Target Start/End: Complemental strand, 19022676 - 19022568
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||  ||  |||||||||| ||||| ||||||||| || |||||||||||||  |||| |||| |   |||||||||| ||||||||| ||    
T  19022676 ttaaattgttttaataaatgctataagttgtttttataagctatattggagaacttatgaaaataagttgaagacaacttatgaaaattgtcataagttg 19022577  T
Q  228 ttttcataa 236  Q
    |||||||||    
T  19022576 ttttcataa 19022568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 34744010 - 34744118
Alignment:
Q  132 aattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttt 230  Q
    |||||||||||||| || ||||||| ||||| ||||||||| || |||||||||| ||  ||||  |||||| |||| |||||| ||||||||| | |||    
T  34744010 aattgtttttgtatatggtataagttgttttcataagctatattggagaacttataaaaataaggcgaaaaaagcttgtgaaaattgtcataagttcttt 34744109  T
Q  231 tcataagtt 239  Q
    |||| ||||    
T  34744110 tcattagtt 34744118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 45338428 - 45338523
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 224  Q
    ||||||||||||||||| |||| ||||| ||||| |||||||| || ||||||| |||||  |||| |||||||  || || |||| |||||||||    
T  45338428 ttaaattgtttttgtatatgctgtaagttgttttttaagctatattggagaactgatgaaaataagttgaaaaaaactaataaaaattgtcataag 45338523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 20428494 - 20428555
Alignment:
Q  169 tatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttt 230  Q
    |||||||| ||||||| |||  |||||||||||| |||||||| || |||||||||||||||    
T  20428494 tatcttagggaacttacgaaaataagctgaaaaaagcttatgagaactgtcataagctgttt 20428555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 45593505 - 45593618
Alignment:
Q  128 attaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctg-aaaaaggcttatgaaaagtgtcataagc 225  Q
    |||||||  ||||||||| ||||||||| |  |||| ||||||||||| ||||||||| |||  ||| ||| ||||| ||||||||||| |||||| ||     
T  45593505 attaaatattttttgtatatgctataagctatttttctaagctatcttggagaacttacgaaaataaactggaaaaaagcttatgaaaaatgtcatcaga 45593604  T
Q  226 tgttttcataagtt 239  Q
    |||||| |||||||    
T  45593605 tgtttttataagtt 45593618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 5947198 - 5947274
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||||||  ||||| |||||||  |||||||||||  ||||||||||| || ||||||||| ||||| |||||    
T  5947198 ataagctatctaggagaagttatgaaaataagctgaaaagagcttatgaaaaatgccataagctggtttcaaaagtt 5947274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 28614443 - 28614523
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||| ||||| | || ||||||||||||| |||| |||||||| |||| |||||| ||| ||| | ||||||||||||||    
T  28614443 ttttaaaagctgtattggagaacttatgaaattaaactgaaaaaagcttgtgaaaattgttatatgttgttttcataagtt 28614523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 20526425 - 20526536
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||| | ||||||  |||||||||  ||||| ||||||||| || ||||||| |||||  |||||| ||||  ||||| ||||| ||| |||| |||    
T  20526425 ttaaattatgtttgtacatgctataagctgttttcataagctattttggagaactaatgaaaataagctaaaaacagcttacgaaaaatgtgataaactg 20526524  T
Q  228 ttttcataagtt 239  Q
    ||||||||||||    
T  20526525 ttttcataagtt 20526536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 223
Target Start/End: Complemental strand, 38138566 - 38138475
Alignment:
Q  133 attgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataa 223  Q
    |||| |||||||| |||||||||| ||||| || |||||| ||   |||||||||||  |||| ||||||| ||||||||||| ||||||||    
T  38138566 attgattttgtatatgctataagttgtttttattagctatattgacgaacttatgaaaataagttgaaaaaagcttatgaaaattgtcataa 38138475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 4970882 - 4970824
Alignment:
Q  131 aaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaa 188  Q
    ||||||||||||||| ||||||||||  |||| ||||| ||| ||||||||||||||||    
T  4970882 aaattgtttttgtatatgctataagttctttttataagatatattagagaacttatgaa 4970824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 19214476 - 19214386
Alignment:
Q  150 tataagtggttt-tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||| |||| |||||||||| ||  ||||||||||||  |||| ||||| | | ||||||||| ||||||  ||||||||||||||||    
T  19214476 tataagttgtttgtataagctatattgtagaacttatgaaaataagttgaaacaagtttatgaaaattgtcatttgctgttttcataagtt 19214386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 28341129 - 28341052
Alignment:
Q  147 tgctataagtggttt-tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 224  Q
    |||||||||| |||| ||||| |||| ||||||||||||||||  ||||||| |||| |||| |||||| |||||||||    
T  28341129 tgctataagttgtttgtataaactatattagagaacttatgaa-ataagctggaaaaagcttttgaaaattgtcataag 28341052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 28900903 - 28900960
Alignment:
Q  177 agaacttatgaatttaagctgaaaaaggcttatga-aaagtgtcataagctgttttca 233  Q
    ||||||||||||  ||||||||||||| |||| || ||| ||||||||||||||||||    
T  28900903 agaacttatgaaaataagctgaaaaagccttacgagaaaatgtcataagctgttttca 28900960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 237
Target Start/End: Original strand, 39279941 - 39280050
Alignment:
Q  129 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||| ||||| || |||| | || ||| ||||  |||||| |||||||| ||||  |||||||||||| ||||||| ||| ||  ||||||||    
T  39279941 ttaaattgtttgtgtatatgttataggctgatttcataaattatcttggagaacttttgaaaataagctgaaaaaagcttatgtaaaatgctataagctg 39280040  T
Q  228 ttttcataag 237  Q
    |||| |||||    
T  39280041 tttttataag 39280050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 39907782 - 39907855
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaa 201  Q
    |||||||||||||||||  |||||||   ||||| |||| ||||||||||||||| |||||  |||||||||||    
T  39907782 ttaaattgtttttgtataagctataaactgttttcataaactatcttagagaactaatgaaaataagctgaaaa 39907855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 7467588 - 7467648
Alignment:
Q  129 ttaaattgttttt-gtatttgctataagtggttttataagctatcttagagaacttatgaa 188  Q
    ||||||||||||| |||| ||||||||||| ||| | ||| |||||||| |||||||||||    
T  7467588 ttaaattgttttttgtatatgctataagtgatttcagaagttatcttagtgaacttatgaa 7467648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 20234461 - 20234505
Alignment:
Q  128 attaaattgtttttgtatttgctataagtggtttta-taagctat 171  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||||    
T  20234461 attaaattgtttttgtaattgctataagttgttttactaagctat 20234505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 34035931 - 34036007
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||||||||||||||||  |||  |||| ||||||   |||||||| | ||||||||| | ||||||||||||    
T  34035931 ataagctatcttagagaacttgcgaaaataagttgaaaacaacttatgaacaatgtcataagttattttcataagtt 34036007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 34464242 - 34464202
Alignment:
Q  198 aaaaaggcttatgaaaagtgtcataagctgttttcataagt 238  Q
    ||||| |||| |||||| |||||||||||||||||||||||    
T  34464242 aaaaaagcttgtgaaaattgtcataagctgttttcataagt 34464202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 43250756 - 43250681
Alignment:
Q  162 tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagt 238  Q
    |||||||||| || |||| ||||||||| ||| |||||||   |||| ||| | |||||||||||||||||||||||    
T  43250756 tataagctattttggagagcttatgaatataaactgaaaacaacttacgaaca-tgtcataagctgttttcataagt 43250681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 43694661 - 43694601
Alignment:
Q  129 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaa 188  Q
    ||||||||||||||||| ||||||||| || ||||||||||||| |   ||||||||||||    
T  43694661 ttaaattgtttttgtatatgctataagctgtttttataagctatatcgaagaacttatgaa 43694601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 45790485 - 45790406
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||| |||| || || ||||||||||  |||||||||||| |||| | |||| ||||||||| | ||||||||||||    
T  45790485 ttttataaactatattggataacttatgaaaataagctgaaaaa-gcttttaaaaattgtcataagttattttcataagtt 45790406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 26771244 - 26771355
Alignment:
Q  129 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| ||||||||| |  ||||||||| ||| ||||||||||||||||  |||| |||||||||||| |||||| ||||||||||||    
T  26771244 ttaaattgtttttgtatatgctataagctttttttataagatatattagagaacttatgaaaataagttgaaaaaggcttttgaaaattgtcataagctg 26771343  T
Q  228 ttttcataagtt 239  Q
    ||||||||||||    
T  26771344 ttttcataagtt 26771355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 236
Target Start/End: Complemental strand, 10758347 - 10758240
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggt-tttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| |||||||||| || |||||||||||| ||||  ||||||||||   ||||||||||| |||| |||||| ||||||||||||    
T  10758347 ttaaattgtttttgtatatgctataagttgtctttataagctatattagc-aacttatgaaaacaagctgaaaaaagcttttgaaaattgtcataagctg 10758249  T
Q  228 ttttcataa 236  Q
    |||||||||    
T  10758248 ttttcataa 10758240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 27028810 - 27028915
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||| ||||| |||||||||  ||||| |||||||||||| |||| ||||||||  |||||||||||  ||||||||||| |||| |||||||    
T  27028810 ttaaattgtttgtgtatatgctataagctgttttcataagctatcttggagagcttatgaaaataagctgaaaatagcttatgaaaaatgtcctaagctg 27028909  T
Q  228 ttttca 233  Q
    ||||||    
T  27028910 ttttca 27028915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 38648329 - 38648439
Alignment:
Q  128 attaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagct 226  Q
    ||||| |||||||||||| || ||| ||| ||||| ||||||||||||  |||||||||||| ||| ||| ||||| |||||||| || |||||| ||||    
T  38648329 attaacttgtttttgtatatgttatgagttgttttcataagctatcttgtagaacttatgaaattacgcttaaaaaagcttatgagaactgtcatgagct 38648428  T
Q  227 gttttcataag 237  Q
    |||||||||||    
T  38648429 gttttcataag 38648439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 18133635 - 18133740
Alignment:
Q  129 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    |||||||| |||||||| | ||||||| ||||||||||| |||| || |||||||||||||  |||||||||||| |||| |||||| ||| ||||||||    
T  18133635 ttaaattgcttttgtatatcctataagctggttttataaactatattggagaacttatgaaaataagctgaaaaaagcttgtgaaaattgttataagctg 18133734  T
Q  228 ttttca 233  Q
     |||||    
T  18133735 atttca 18133740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 25930646 - 25930533
Alignment:
Q  128 attaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtca-taagc 225  Q
    |||||| ||||||||||| |||| ||| | ||||| |||||||||||| |||||||| |||   |||||||||||| ||||| ||||||||||| ||||     
T  25930646 attaaaatgtttttgtatatgctttaaattgttttcataagctatcttggagaacttgtgatagtaagctgaaaaaagcttacgaaaagtgtcattaaga 25930547  T
Q  226 tgttttcataagtt 239  Q
    | ||||||||||||    
T  25930546 ttttttcataagtt 25930533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 12976223 - 12976302
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||||||||| ||||||||||||||||  |||||||||||| |||| |||||| ||| | |||||||| |||||||||    
T  12976223 ttttataagctatattagagaacttatgaa-ataagctgaaaaaagcttttgaaaattgttagaagctgttctcataagtt 12976302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 8146362 - 8146419
Alignment:
Q  182 ttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||| |||||||| ||||  ||||||||||||||||||| |||||||||||||||    
T  8146362 ttatgaaattaagctggaaaaaacttatgaaaagtgtcataaactgttttcataagtt 8146419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 31716283 - 31716207
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||||||| ||||| ||||  |  |||||||||||| ||||||||| | |||||||||||||||||| |||||    
T  31716283 ataagctatcttggagaagttatagaaataagctgaaaaaagcttatgaagaatgtcataagctgttttcaaaagtt 31716207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 35534702 - 35534593
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| |  |||| || ||||| ||||| ||| || |||||||||||||  ||||| |||||| |||| | |||| ||||||||||||    
T  35534702 ttaaattgtttttgtatgt--tatatgttgttttcataagttatattggagaacttatgaaagtaagccgaaaaaagcttgttaaaattgtcataagctg 35534605  T
Q  228 ttttcataagtt 239  Q
    |||||| |||||    
T  35534604 ttttcacaagtt 35534593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 10120783 - 10120846
Alignment:
Q  176 gagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||||||||  |||||||||||  || ||||| || ||||||||||||||||||||||||    
T  10120783 gagaacttatgaaaataagctgaaaacagcatatgataaatgtcataagctgttttcataagtt 10120846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 16825628 - 16825518
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggttt-tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||| |  | ||||||| |||| || ||||||| ||   |||||||||||  |||| |||||||| |||||||||| |||||||||||     
T  16825628 ttaaattgtttttgtttacgttataagttgtttctacaagctatattgccgaacttatgaaaataagttgaaaaag-cttatgaaaattgtcataagcta 16825530  T
Q  228 ttttcataagtt 239  Q
    ||||||||||||    
T  16825529 ttttcataagtt 16825518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 29205787 - 29205897
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| ||||||||||  |||| |||| |||| || ||||| |||||||  || | | |||||| |||||||||| ||||||| ||||    
T  29205787 ttaaattgtttttgtatatgctataagttattttcataaactattttggagaatttatgaaagtaggttaaaaaag-cttatgaaaaatgtcatacgctg 29205885  T
Q  228 ttttcataagtt 239  Q
    |||| |||||||    
T  29205886 ttttaataagtt 29205897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 30251540 - 30251434
Alignment:
Q  134 ttgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttc 232  Q
    ||||| |||||| || ||||||  ||||| |||||||||||| ||  |||||||||  ||||||| |||| ||||||||||| ||  |||||||||||||    
T  30251540 ttgttattgtatatgttataagctgttttcataagctatcttggaccacttatgaaaataagctgtaaaaagcttatgaaaaatgcaataagctgttttc 30251441  T
Q  233 ataagtt 239  Q
     ||||||    
T  30251440 gtaagtt 30251434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 37945576 - 37945686
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgt 228  Q
    |||||||  |||||||| |||||||  || ||||||||||||| ||  | ||||| ||||  |||| | ||||| ||||||| ||| |||||||||||||    
T  37945576 ttaaattaattttgtatatgctatagttgtttttataagctatattgtacaacttctgaaaataagttaaaaaatgcttatggaaattgtcataagctgt 37945675  T
Q  229 tttcataagtt 239  Q
    ||||| |||||    
T  37945676 tttcagaagtt 37945686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 239
Target Start/End: Complemental strand, 29168146 - 29168037
Alignment:
Q  131 aaattgtttttgtatttgctataagtggtttta-taagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgtt 229  Q
    ||||| ||||||||| |||||||||  |||||  | ||||||||| ||||||||||| |  |||||||| |||   ||||||||| |||||||| |||||    
T  29168146 aaattatttttgtatatgctataagctgttttcctgagctatcttggagaacttatggaaataagctgagaaacatttatgaaaaatgtcataatctgtt 29168047  T
Q  230 ttcataagtt 239  Q
    || |||||||    
T  29168046 tttataagtt 29168037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 35749626 - 35749550
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||||||||| ||||||||||||  || | ||||||| | ||||||||| ||  | ||||||||||||||||||    
T  35749626 ataagctatcttaaagaacttatgaaaatatgttgaaaaaagtttatgaaaaatgctacaagctgttttcataagtt 35749550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 43045783 - 43045707
Alignment:
Q  161 ttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataag 237  Q
    |||||| |||| || |||||||||||||  |||| ||||||| |||||| |||| |||  |||||||||||||||||    
T  43045783 ttataaactatattggagaacttatgaaaataagttgaaaaaagcttattaaaattgttgtaagctgttttcataag 43045707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 16347200 - 16347279
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtca-taagctgttttcataag 237  Q
    |||||||| |||||||   ||||||||||  |||||||||| || ||||||||||||||||| |||  ||||||||||||    
T  16347200 ttttataaactatcttgttgaacttatgatattaagctgaataaagcttatgaaaagtgtcattaacttgttttcataag 16347279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 35644031 - 35643968
Alignment:
Q  176 gagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||| ||||||||  |||| ||||||| ||||||||||| |||||||| || ||||||||||||    
T  35644031 gagagcttatgaaaataagttgaaaaaagcttatgaaaattgtcataaactattttcataagtt 35643968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 42043436 - 42043377
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatga 187  Q
    |||||||||||||| || || ||||||| ||||| |||||||||||||||||||| ||||    
T  42043436 ttaaattgtttttggatatgatataagttgttttcataagctatcttagagaactaatga 42043377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 9956884 - 9956794
Alignment:
Q  150 tataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||| ||||| |||| ||||||| |||||||||||||  |||||||||||   |||||||| | || ||||| || ||||||||||||    
T  9956884 tataagttgttttcataatctatcttggagaacttatgaaaataagctgaaaactacttatgaacaatgccataaactattttcataagtt 9956794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 6881908 - 6881965
Alignment:
Q  131 aaattgtttttgtatttgctataagtggttttataagctatcttagagaacttatgaa 188  Q
    ||||||||||| ||| |||||||||  |||||||||||||  || |||||||||||||    
T  6881908 aaattgtttttatatatgctataagctgttttataagctaaattggagaacttatgaa 6881965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 28763417 - 28763458
Alignment:
Q  198 aaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||| ||||||||||| ||| ||||||||||||||||||||    
T  28763417 aaaaaagcttatgaaaattgttataagctgttttcataagtt 28763458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 40859796 - 40859763
Alignment:
Q  205 cttatgaaaagtgtcataagctgttttcataagt 238  Q
    |||||||||| |||||||||||||||||||||||    
T  40859796 cttatgaaaattgtcataagctgttttcataagt 40859763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 1930049 - 1930125
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||||||| | || ||| ||||  |||||||||||  ||||||||| | |||||||| ||||||||| |||||    
T  1930049 ataagctatcttggtgaccttgtgaaaataagctgaaaacagcttatgaacaatgtcataaactgttttcacaagtt 1930125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 10114471 - 10114579
Alignment:
Q  132 aattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttt 230  Q
    ||||||||| ||||  ||||||||  ||||| || |||||| || |||||| ||||||  |||||||||||  || ||||| || ||| ||||| |||||    
T  10114471 aattgttttggtataagctataagctgttttcattagctatattggagaacatatgaaaataagctgaaaacagcatatgataaatgttataagttgttt 10114570  T
Q  231 tcataagtt 239  Q
    |||||||||    
T  10114571 tcataagtt 10114579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 10383927 - 10383974
Alignment:
Q  191 taagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||| |||  ||||||||||| ||||||||||||||||||||||||    
T  10383927 taagctgtaaacagcttatgaaaa-tgtcataagctgttttcataagtt 10383974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 11861791 - 11861843
Alignment:
Q  137 tttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaa 188  Q
    ||||||||| |||||||||| ||||| |||||||||  |||||||||||||||    
T  11861791 tttttgtatatgctataagttgtttttataagctataatagagaacttatgaa 11861843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 53789553 - 53789441
Alignment:
Q  128 attaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagct 226  Q
    |||||| |||||| |||| |||||||||| ||| | |||||||||| | ||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  53789553 attaaaatgttttggtatatgctataagttgttatcataagctatcatggagaacttatgaaattaagctgaaaaaagcttatgaaaagtgtcataagct 53789454  T
Q  227 gttttcataagtt 239  Q
    |||| || |||||    
T  53789453 gtttccaaaagtt 53789441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 237
Target Start/End: Original strand, 30443872 - 30443981
Alignment:
Q  129 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    |||||||| |||||||| ||||||||| || |||||||| |||| || |||||||||||||  |||||||||||| |||| |||||| ||||||||||||    
T  30443872 ttaaattgcttttgtatatgctataagctgtttttataaactatattggagaacttatgaaaataagctgaaaaaagcttgtgaaaattgtcataagctg 30443971  T
Q  228 ttttcataag 237  Q
    ||||||||||    
T  30443972 ttttcataag 30443981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 129 - 235
Target Start/End: Original strand, 20880455 - 20880562
Alignment:
Q  129 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| ||||||||  || ||||| ||||||| || |||||||||||||  |||||| ||||| ||||||||||| ||||||||||||    
T  20880455 ttaaattgtttttgtatatgctataaactgtttttaaaagctatattggagaacttatgaaaataagctcaaaaaagcttatgaaaattgtcataagctg 20880554  T
Q  228 ttttcata 235  Q
    ||||||||    
T  20880555 ttttcata 20880562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 18405914 - 18405811
Alignment:
Q  137 tttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcata 235  Q
    ||||||||| |||||||||| ||||| |||||||||||| ||||||||||||| |||||||  |||| | |||||||||||||| | | |||||||||||    
T  18405914 tttttgtatatgctataagttgttttcataagctatcttggagaacttatgaaattaagcttgaaaaagattatgaaaagtgtcgtgaactgttttcata 18405815  T
Q  236 agtt 239  Q
    ||||    
T  18405814 agtt 18405811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 39980708 - 39980819
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    |||||||||||||| |  |||||||||| ||||| ||||||||| || |||||||||||||  |||| ||||||| ||||||||||   |||||||||||    
T  39980708 ttaaattgtttttgaacatgctataagttgtttttataagctatattggagaacttatgaaaataagttgaaaaaagcttatgaaaccagtcataagctg 39980807  T
Q  228 ttttcataagtt 239  Q
    ||||||||||||    
T  39980808 ttttcataagtt 39980819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 21367646 - 21367757
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    |||||||||||| ||||    ||||||| ||||| |||||||||||| |||||||||||||  |||||||||||  |||| |||| | ||||||||||||    
T  21367646 ttaaattgttttcgtataatgtataagttgttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttgtgaacaatgtcataagctg 21367745  T
Q  228 ttttcataagtt 239  Q
    ||||||||||||    
T  21367746 ttttcataagtt 21367757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 36631142 - 36631031
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||  |||||||||| ||||| || |||||| || |||||||||||||  ||||| |||||| |||| ||||||  |||||||||||    
T  36631142 ttaaattgtttttgtacatgctataagttgtttttatgagctatattggagaacttatgaaaataagcagaaaaaagcttttgaaaatcgtcataagctg 36631043  T
Q  228 ttttcataagtt 239  Q
     |||||||||||    
T  36631042 gtttcataagtt 36631031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 235
Target Start/End: Complemental strand, 402633 - 402526
Alignment:
Q  129 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    |||||||||||| ||||  | |||||| || |||||||| |||||||  ||||||| |||| ||||||||||||  ||||||||| | ||||||||||||    
T  402633 ttaaattgttttcgtataagttataagctgtttttataatctatcttgaagaacttgtgaaattaagctgaaaacagcttatgaacaatgtcataagctg 402534  T
Q  228 ttttcata 235  Q
    ||||||||    
T  402533 ttttcata 402526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 242
Target Start/End: Original strand, 901934 - 902017
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagttttc 242  Q
    ||||||||||||| || |||||||||||||  |||| ||||||| ||||||| ||| ||| || ||||||||||||||||||||    
T  901934 ttttataagctatattggagaacttatgaaaataagttgaaaaaagcttatggaaaatgttattagctgttttcataagttttc 902017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 20170502 - 20170613
Alignment:
Q  129 ttaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| ||||||||| || ||||| ||| ||| || ||||||| |||||  |||| ||||||| ||||||||||| |  ||| |||||    
T  20170502 ttaaattgtttttgtatatgctataagttgtttttacaagttatttttgagaactaatgaaaataagttgaaaaaagcttatgaaaaatcccattagctg 20170601  T
Q  228 ttttcataagtt 239  Q
    ||||| ||||||    
T  20170602 ttttcttaagtt 20170613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 46778281 - 46778171
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||| | ||||||||   ||||| |||| ||||||| || |||||||||| | |||||||| ||  |||||||||| ||||||||| ||    
T  46778281 ttaaattgtttttgtttatgctataaactgttttcataaactatcttggacaacttatgaaat-aagctgaacaaaacttatgaaaaatgtcataagttg 46778183  T
Q  228 ttttcataagtt 239  Q
    ||||||||||||    
T  46778182 ttttcataagtt 46778171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 35959547 - 35959454
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggttt-tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcat 221  Q
    ||||||| ||||||||| |||| ||||| |||| |||||||||| |||||||| || ||||  |||||||||||| |||| |||||| ||||||    
T  35959547 ttaaattatttttgtatatgctgtaagttgtttctataagctatattagagaatttttgaaaataagctgaaaaaagcttttgaaaattgtcat 35959454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 236
Target Start/End: Original strand, 584025 - 584133
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtg-gttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    |||||||||||||||   ||||||||||  |||| ||||||||||||  |||||||||||| ||||||| ||| |  | |||||||| || | |||||||    
T  584025 ttaaattgtttttgttcatgctataagttagtttcataagctatcttgaagaacttatgaaattaagcttaaagaaacctatgaaaactgccgtaagctg 584124  T
Q  228 ttttcataa 236  Q
    |||||||||    
T  584125 ttttcataa 584133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 24085398 - 24085318
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||| ||||||||||| |||||||| ||||  |||||||||||  || |||||| |||  |||||||||||||||||||||    
T  24085398 ttttgtaagctatcttggagaacttgtgaaaataagctgaaaacagcgtatgaacagtaccataagctgttttcataagtt 24085318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 46478684 - 46478767
Alignment:
Q  147 tgctataagt-ggttttataagctatct--tagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    |||||||||| ||||||||||||||| |  | |||||||||||||  |||| ||||||| ||||||||||| ||||||||||||    
T  46478684 tgctataagttggttttataagctatatattggagaacttatgaaaataagttgaaaaaagcttatgaaaactgtcataagctg 46478767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 22203429 - 22203520
Alignment:
Q  149 ctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||| ||||| |||||||||||| |||||||||||||  ||| ||| |  | ||||| | ||| ||||||||||||||||||||||||    
T  22203429 ctataagttgttttcataagctatcttggagaacttatgaaaataaactgcattaagcttaagtaaaatgtcataagctgttttcataagtt 22203520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 47132309 - 47132391
Alignment:
Q  128 attaaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttat 209  Q
    |||||||||||||||||| ||||||| | || ||||||||||||| || ||||| |||||||  |||| ||||||| ||||||    
T  47132309 attaaattgtttttgtatatgctataggttgtttttataagctatattggagaagttatgaaaataagttgaaaaaagcttat 47132391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 239
Target Start/End: Original strand, 37689212 - 37689319
Alignment:
Q  131 aaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgtt 229  Q
    ||||||||||||||| ||||||| || ||||| || || ||| | |||| |||||||||  |||| ||||||| |||| |||||| ||||||||||||||    
T  37689212 aaattgtttttgtatatgctataggttgtttttatgag-tatatcagagcacttatgaaaataagttgaaaaaagctt-tgaaaattgtcataagctgtt 37689309  T
Q  230 ttcataagtt 239  Q
    ||| ||||||    
T  37689310 ttcttaagtt 37689319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 49556900 - 49556945
Alignment:
Q  191 taagctgaaaaaggcttatgaaaagtgtcataagctgttttcataa 236  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||||    
T  49556900 taagttgaaaaaagcttatgaaaattgtcataagctgttttcataa 49556945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 4401026 - 4401127
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgt 228  Q
    ||||||| |||| |||| |||||||||| ||||||  || ||| || |||||||||||||  |||| | ||||  ||||||| ||| |||||||||||||    
T  4401026 ttaaattattttcgtatatgctataagttgtttta--agttatattggagaacttatgaaaataagttaaaaacagcttatggaaattgtcataagctgt 4401123  T
Q  229 tttc 232  Q
    ||||    
T  4401124 tttc 4401127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 20257514 - 20257626
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggttttat-aagctatcttagagaacttatg-aatttaagctgaaaaaggcttatgaaaagtgtcataagct 226  Q
    ||||||||||||||||| |||||||||| ||||| | ||||||| || |||| |||||| ||  |||| |  ||||  |||||||||| |||||| ||||    
T  20257514 ttaaattgtttttgtatatgctataagttgttttttgaagctatattggagagcttatgaaaaataagttttaaaaaacttatgaaaattgtcattagct 20257613  T
Q  227 gttttcataagtt 239  Q
    | |||||||||||    
T  20257614 gctttcataagtt 20257626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 34610862 - 34610786
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||||||| | |||||||||||  | |||||||||   |||||||| | |||||||||| |||||||||||||    
T  34610862 ataagctatcttggcgaacttatgaaaatcagctgaaaaccacttatgaacaatgtcataagcagttttcataagtt 34610786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 44061114 - 44061046
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagct 196  Q
    ||||||||||||| |||  ||||||||| ||||| ||| | |||||||||||||||||||| |||||||    
T  44061114 ttaaattgtttttctataagctataagttgttttcatatgatatcttagagaacttatgaaattaagct 44061046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 45541585 - 45541660
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||||||| || |||||||||   ||| |||||||  ||||||||| | ||||||||||||||||||||||||    
T  45541585 ataagctatcttggataacttatgagaataacctgaaaacagcttatgaaca-tgtcataagctgttttcataagtt 45541660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 46031004 - 46031080
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||| ||||||| |||||||||| ||  |||||||||||  ||||||||| | ||||||| ||||||||| ||||||    
T  46031004 ataaactatcttggagaacttattaaaataagctgaaaacagcttatgaataatgtcataggctgttttcgtaagtt 46031080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 231
Target Start/End: Complemental strand, 13715665 - 13715560
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt---ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagc 225  Q
    |||| ||| |||||||| || ||||||| |||||   |||||| || || || ||||||||||  |||| ||||||| ||||||||||  ||||||||||    
T  13715665 ttaatttgattttgtatatgatataagttgtttttatataagcgatattggacaacttatgaaaataagttgaaaaatgcttatgaaagttgtcataagc 13715566  T
Q  226 tgtttt 231  Q
    ||||||    
T  13715565 tgtttt 13715560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 28795910 - 28795839
Alignment:
Q  162 tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttca 233  Q
    |||||||||| ||||||||||||||||  |||||||||||  ||||| ||||| ||||| || | |||||||    
T  28795910 tataagctatattagagaacttatgaaaataagctgaaaagagcttaagaaaattgtcaaaaaccgttttca 28795839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 31365211 - 31365168
Alignment:
Q  196 tgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||| ||||||||||| |||||||||||| |||||||||||    
T  31365211 tgaaaaaagcttatgaaaattgtcataagctgctttcataagtt 31365168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 30956717 - 30956659
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatg 186  Q
    |||||||||||||||||  ||||||||| ||||| | |||||||||| |||||||||||    
T  30956717 ttaaattgtttttgtataggctataagttgttttcaaaagctatcttggagaacttatg 30956659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 30972529 - 30972471
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatg 186  Q
    |||||||||||||||||  ||||||||| ||||| | |||||||||| |||||||||||    
T  30972529 ttaaattgtttttgtataggctataagttgttttcaaaagctatcttggagaacttatg 30972471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 33883806 - 33883768
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaa 201  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  33883806 ataagctatcttagagaacttatgaaaataagctgaaaa 33883768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 466207 - 466275
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgtttt 231  Q
    ||||||||| || |||||||||||||  |||||| ||||| ||||| ||||| ||| | ||||||||||    
T  466207 ataagctatgttggagaacttatgaaaataagctaaaaaaagcttaagaaaaatgttaaaagctgtttt 466275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 944591 - 944655
Alignment:
Q  178 gaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagttttc 242  Q
    |||| ||||||  |||| ||||||| | ||||| ||| ||||||||||| |||||||||||||||    
T  944591 gaacatatgaaagtaagttgaaaaaagattatggaaattgtcataagctattttcataagttttc 944655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 26911627 - 26911671
Alignment:
Q  191 taagctgaaaaaggcttatgaaaagtgtcataagctgttttcata 235  Q
    |||| |||||||  |||||||||| ||||||||||||||||||||    
T  26911627 taagttgaaaaaaacttatgaaaattgtcataagctgttttcata 26911671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 129 - 236
Target Start/End: Original strand, 41851514 - 41851622
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| |||||||||| ||||| | |||||||||| ||||| ||||||| ||||||||| ||| ||||||||||||||||||||| ||    
T  41851514 ttaaattgtttttgtatatgctataagttgttttcagaagctatcttggagaatttatgaaattaagctgagaaaagcttatgaaaagtgtcataagttg 41851613  T
Q  228 ttttcataa 236  Q
    ||| |||||    
T  41851614 tttccataa 41851622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 45229491 - 45229601
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgt 228  Q
    ||||||||||||||||| || ||| | || ||| |||||||||||| |||||||||||||  |||||||||||| ||| ||||||| ||||||||| | |    
T  45229491 ttaaattgtttttgtatatgttatcattgttttcataagctatcttcgagaacttatgaaaataagctgaaaaaagctaatgaaaaatgtcataaggtct 45229590  T
Q  229 tttcataagtt 239  Q
    |||||||||||    
T  45229591 tttcataagtt 45229601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 43279616 - 43279512
Alignment:
Q  131 aaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgtt 229  Q
    |||||||||||||||  ||||||||| ||||| ||||||||| || |||||||| ||||  |||| ||||||| ||||||||||| ||||||||||||||    
T  43279616 aaattgtttttgtat--gctataagttgtttttataagctatattggagaacttgtgaaaataagttgaaaaaagcttatgaaaattgtcataagctgtt 43279519  T
Q  230 ttcataa 236  Q
    |||||||    
T  43279518 ttcataa 43279512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 33981140 - 33981214
Alignment:
Q  167 gctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtttt 241  Q
    |||||||| ||||| ||||||| ||||| ||||||| |||||||||| ||||||||||| |||||||||||||||    
T  33981140 gctatcttggagaatttatgaaattaagttgaaaaaagcttatgaaatgtgtcataagccgttttcataagtttt 33981214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 41812181 - 41812072
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgt 228  Q
    ||||||||||||||||| ||||| |||  |||| | |||||||||| || |||||| ||| | ||| ||||||| ||||||||||| |||||||||||||    
T  41812181 ttaaattgtttttgtatatgctacaagatgtttcaaaagctatcttggaaaacttaggaaat-aagttgaaaaaagcttatgaaaaatgtcataagctgt 41812083  T
Q  229 tttcataagtt 239  Q
    ||||| |||||    
T  41812082 tttcaaaagtt 41812072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 236
Target Start/End: Complemental strand, 15757750 - 15757641
Alignment:
Q  129 ttaaattgttttt-gtatttgctataagtggt-tttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagct 226  Q
    ||||||||||||| |||| |||||||||| || ||||||||||||   ||||||| ||||||  |||||||||||| |||| |||||| ||||||||||     
T  15757750 ttaaattgttttttgtatatgctataagttgtatttataagctatacaagagaacgtatgaaaataagctgaaaaaagcttctgaaaattgtcataagca 15757651  T
Q  227 gttttcataa 236  Q
    ||||||||||    
T  15757650 gttttcataa 15757641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 231
Target Start/End: Complemental strand, 12464564 - 12464461
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| |||||||||   |||| |||||||||||| |||||||| ||||  |||||||||||| |||| |||||  |||| ||||||     
T  12464564 ttaaattgtttttgtatatgctataagctattttcataagctatcttggagaacttgtgaaaataagctgaaaaaagcttgtgaaatatgtcgtaagctt 12464465  T
Q  228 tttt 231  Q
    ||||    
T  12464464 tttt 12464461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 18066107 - 18066218
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||  |||  ||||||||  ||||| |||||||||||| ||||||||| |||  |||| ||||||  ||||||||  | ||||||||||||    
T  18066107 ttaaattgttttcatataagctataagctgttttcataagctatcttggagaacttaagaaaataaggtgaaaatagcttatgagcaatgtcataagctg 18066206  T
Q  228 ttttcataagtt 239  Q
    ||||||||||||    
T  18066207 ttttcataagtt 18066218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 32592566 - 32592676
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    |||||||||||| ||||  ||||||||| ||||| |||||| || || |||||||||||||  |||| ||| ||| ||||||||||| |||| ||||||     
T  32592566 ttaaattgtttt-gtatacgctataagttgtttttataagcaatattggagaacttatgaaaataagttgagaaaagcttatgaaaattgtcgtaagcta 32592664  T
Q  228 ttttcataagtt 239  Q
    ||||||||||||    
T  32592665 ttttcataagtt 32592676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 39659600 - 39659489
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||| | || ||||| | ||||| ||||||||| ||||||||||||||||  |||| ||| ||| |||||  |||  ||||||||||||    
T  39659600 ttaaattgtttttgtctatgttataacttgtttttataagctatattagagaacttatgaagataaggtgacaaaagcttagaaaatttgtcataagctg 39659501  T
Q  228 ttttcataagtt 239  Q
    ||||| ||||||    
T  39659500 ttttcgtaagtt 39659489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 41241223 - 41241136
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaag 215  Q
    ||||||||||||||||| |||||||||| |||||  |||| |||||| || ||||| |||| ||||||||||||| ||||||| ||||    
T  41241223 ttaaattgtttttgtatatgctataagtagttttcctaagttatcttggaaaacttgtgaaattaagctgaaaaaagcttatggaaag 41241136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 26202025 - 26202115
Alignment:
Q  147 tgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataa 236  Q
    |||||||||| ||||| ||||| ||| || |||||||||||||  |||| ||||||| ||||||||||| ||||||||| |||| ||||||    
T  26202025 tgctataagttgtttttataagatatattggagaacttatgaaaataagttgaaaaaagcttatgaaaattgtcataagttgttctcataa 26202115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 5745873 - 5745768
Alignment:
Q  132 aattgtttttgtatttgctataagtggttt-tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttt 230  Q
    |||||||||| ||| ||||||||||  ||| |||||||||| || ||| ||||| |||  | || || |||| ||||||||||| |||||||||||||||    
T  5745873 aattgtttttttatatgctataagttatttctataagctatatttgaggacttaggaaaattagttggaaaaagcttatgaaaattgtcataagctgttt 5745774  T
Q  231 tcataa 236  Q
    ||||||    
T  5745773 tcataa 5745768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 41293219 - 41293143
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||||| | ||| |||||||||| |||||||||||  |||||||  || |||||||||||||||| |||||||    
T  41293219 ataagctatcctggagtacttatgaatataagctgaaaacagcttatgcgaaatgtcataagctgtttttataagtt 41293143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 1625879 - 1625990
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    |||||||||||| ||||  | ||||||| ||||| |||||||||||| ||||||||| |||  | |||||||||   |||||||| | |||||||||||     
T  1625879 ttaaattgttttcgtataagttataagttgttttcataagctatcttggagaacttacgaaaatcagctgaaaacatcttatgaacattgtcataagcta 1625978  T
Q  228 ttttcataagtt 239  Q
     |||||||||||    
T  1625979 ctttcataagtt 1625990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 20952342 - 20952445
Alignment:
Q  137 tttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcata 235  Q
    ||||| ||| |||||||||| ||||| || |||||| || |||||||||||||  |||| ||||||| | | ||||||| || ||||| |||||||||||    
T  20952342 tttttttatatgctataagttgtttttattagctatattggagaacttatgaaaataagttgaaaaaagttaatgaaaattggcataaactgttttcata 20952441  T
Q  236 agtt 239  Q
    ||||    
T  20952442 agtt 20952445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 750679 - 750760
Alignment:
Q  158 gttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||| |||||||||||| ||||||||||| |  |||||| ||||  ||||||||| | |||||| |||| ||||||||||||    
T  750679 gtttcataagctatcttggagaacttatgcaaataagctcaaaacagcttatgaacaatgtcattagctcttttcataagtt 750760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 9174808 - 9174897
Alignment:
Q  143 tatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgtttt 231  Q
    ||||| |||||||  ||||| ||||||||||||| ||| ||||||||  |||||||||||  ||||||||| | ||||||||| ||||||    
T  9174808 tatttactataagctgttttcataagctatcttacagagcttatgaaaataagctgaaaatagcttatgaacaatgtcataagttgtttt 9174897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 20926516 - 20926577
Alignment:
Q  162 tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataa 223  Q
    |||||||||| ||||||||||||||||  |||| ||||||| ||| ||||||| ||||||||    
T  20926516 tataagctatattagagaacttatgaaaataagttgaaaaaagctaatgaaaattgtcataa 20926577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 237
Target Start/End: Original strand, 40279176 - 40279285
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    |||||||||||| ||||  | ||||||| ||||| ||||||||| || |||||||||||||  | |||||||||  | ||||||| | || |||||| ||    
T  40279176 ttaaattgttttggtataagatataagttgttttcataagctatgttggagaacttatgaaaattagctgaaaatagtttatgaacaatgccataagttg 40279275  T
Q  228 ttttcataag 237  Q
    ||||||||||    
T  40279276 ttttcataag 40279285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 7035627 - 7035547
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||| ||||||| || ||||||||||  ||||| |||||   ||||||||  |||||||||||||||| ||||||||    
T  7035627 ttttataaactatcttggaaaacttatgaaaataagcggaaaacaccttatgaactgtgtcataagctgtttccataagtt 7035547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 13325596 - 13325660
Alignment:
Q  175 agagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||||||||||  | |||||||||| |||||||  || |||||||||||||||||| |||||    
T  13325596 agagaacttatgaaaatgagctgaaaaaagcttatgtgaaatgtcataagctgttttcaaaagtt 13325660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 16451133 - 16451208
Alignment:
Q  164 taagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||||||| |||||||  ||||  |||||||||||  ||| ||||| | ||||||||| ||||||||||||||    
T  16451133 taagctatcttggagaactcgtgaaaataagctgaaaacagctcatgaacaatgtcataagttgttttcataagtt 16451208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 26626852 - 26626963
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    |||||||||||| ||||  |||| |||  ||||| ||||||||||||  ||||||||||||  ||| |||||||  | ||||||| | |||||||||||     
T  26626852 ttaaattgttttcgtataagctagaagctgttttcataagctatcttgcagaacttatgaaaataacctgaaaacagattatgaacaatgtcataagcta 26626951  T
Q  228 ttttcataagtt 239  Q
    ||||| ||||||    
T  26626952 ttttcgtaagtt 26626963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 33192209 - 33192291
Alignment:
Q  156 tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||| |||||||||| | |||| ||||| ||| |||||||||||  ||||||| | | |||||||| |||||||||||||||    
T  33192209 tggtttcataagctatcctggagagcttataaatataagctgaaaacagcttatggata-tgtcataaactgttttcataagtt 33192291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 33319903 - 33319807
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagct 226  Q
    ||||| ||||||||||| | ||||||   ||||| |||| ||||||| |||||||||||||  |||||||||||| |||||| |||  |||||||||||    
T  33319903 ttaaactgtttttgtatatactataaactgttttcataaactatcttggagaacttatgaaaataagctgaaaaaagcttattaaa--tgtcataagct 33319807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 2227194 - 2227248
Alignment:
Q  177 agaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgtttt 231  Q
    |||||||| |||  |||||||||||| | ||||||||| ||||||||||||||||    
T  2227194 agaacttacgaaaataagctgaaaaatgtttatgaaaaatgtcataagctgtttt 2227248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 43570446 - 43570503
Alignment:
Q  181 cttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||||  |||||| |||||| |||||||| | ||||||||||||||||||||||||    
T  43570446 cttatgaaaataagctaaaaaag-cttatgaacaatgtcataagctgttttcataagtt 43570503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 1647249 - 1647325
Alignment:
Q  162 tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||||||  |||||| |||||| |  |||||||||||  ||||||||  | ||||||||||||||||||||||||    
T  1647249 tataagctattatagagagcttatggaaataagctgaaaacagcttatgagca-tgtcataagctgttttcataagtt 1647325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 7928351 - 7928278
Alignment:
Q  167 gctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgt-cataagctgttttcataagtt 239  Q
    |||||||| |||||||||||||  |||||||||||   |||||||| | ||| ||||||||||||||| |||||    
T  7928351 gctatcttggagaacttatgaaaataagctgaaaacaacttatgaacaatgtccataagctgttttcaaaagtt 7928278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 231
Target Start/End: Original strand, 12289774 - 12289879
Alignment:
Q  128 attaaattgtttttg-tatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagc 225  Q
    ||||||||||||||| ||  || ||||||| ||||| ||||  ||| || |||||||||||||  |||| ||||||| ||||||||| | |||||||| |    
T  12289774 attaaattgtttttggtacatgttataagttgtttttataatttatattggagaacttatgaaaataagttgaaaaaagcttatgaatattgtcataaac 12289873  T
Q  226 tgtttt 231  Q
    ||||||    
T  12289874 tgtttt 12289879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 31561792 - 31561719
Alignment:
Q  169 tatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagttttc 242  Q
    |||||| |||||||||||||  |||||| ||| |  ||||||||||  |||||| |||||||||| ||||||||    
T  31561792 tatcttggagaacttatgaaagtaagcttaaacaatcttatgaaaaacgtcatatgctgttttcaaaagttttc 31561719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 4606939 - 4607015
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||||||| |||||||||||||  |||||| |||   ||| ||||| | ||||||||| |||||||| |||||    
T  4606939 ataagctatcttggagaacttatgaaaataagctaaaagcagctcatgaacaatgtcataagttgttttcacaagtt 4607015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 36043924 - 36043996
Alignment:
Q  169 tatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtttt 241  Q
    |||||| |||| |||||||| || |||| ||||  ||||||||| | |||| |||| ||||||||||||||||    
T  36043924 tatcttggagagcttatgaaattgagctaaaaacagcttatgaacaatgtcgtaagttgttttcataagtttt 36043996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 224
Target Start/End: Complemental strand, 39073780 - 39073684
Alignment:
Q  129 ttaaattgtttttgtatttgctataagt-ggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 224  Q
    ||||||||||||||||| ||||||||||   ||||||||||||| || |||||||  ||||  |||| ||||  |  |||||||||| |||||||||    
T  39073780 ttaaattgtttttgtatatgctataagtaatttttataagctatattggagaactagtgaaaataagttgaacgaaacttatgaaaattgtcataag 39073684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 41407280 - 41407392
Alignment:
Q  129 ttaaattgttttt-gtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagct 226  Q
    ||||||||||||| |||| ||||||||||  |||| ||||| | |||| |||||||| ||||  ||| || ||| | ||||||||||| || |||||||     
T  41407280 ttaaattgttttttgtatatgctataagttatttttataagttttctttgagaacttgtgaaaataaccttaaacaagcttatgaaaaatgccataagcc 41407379  T
Q  227 gttttcataagtt 239  Q
    ||||| |||||||    
T  41407380 gttttaataagtt 41407392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 16937974 - 16937863
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| |||||||||| ||||| ||| ||||| || ||||||||| |||  |||||||||||| ||||||||||  ||||||||||||    
T  16937974 ttaaattgtttttgtatatgctataagttgtttttatacgctatattggagaacttaggaaaataagctgaaaaaagcttatgaaatttgtcataagctg 16937875  T
Q  228 ttttcataagtt 239  Q
    ||||||||||||    
T  16937874 ttttcataagtt 16937863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 16458070 - 16457959
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| |||||||||| ||||| || |||||  || |||||||| ||||  ||| |||||||  ||||||||||| ||||||||||||    
T  16458070 ttaaattgtttttgtatatgctataagttgtttttatgagctaaattggagaacttgtgaaaataaactgaaaagagcttatgaaaactgtcataagctg 16457971  T
Q  228 ttttcataagtt 239  Q
    ||||||||||||    
T  16457970 ttttcataagtt 16457959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 10639931 - 10640043
Alignment:
Q  128 attaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagct 226  Q
    |||||||||||||||||| ||  || ||| ||||  |||| |||| || |||||||||||||  ||||||  |||| ||||||||||| |||||||||||    
T  10639931 attaaattgtttttgtatatgtgatgagttgtttacataaactattttggagaacttatgaaaataagctagaaaaagcttatgaaaaatgtcataagct 10640030  T
Q  227 gttttcataagtt 239  Q
    |||||||||||||    
T  10640031 gttttcataagtt 10640043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 12857765 - 12857685
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||||||||| || |||||||||||||  |||||||||||| | || |||||| ||||||||| ||||||||||||||    
T  12857765 ttttataagctatattggagaacttatgaaaataagctgaaaaaaggttgtgaaaattgtcataagttgttttcataagtt 12857685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 236
Target Start/End: Original strand, 39105443 - 39105551
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    |||||||||||| ||||  |||||||   ||||| |||||||||||| |||||||||||||  |||||| ||||  ||||||||| | ||||||||||||    
T  39105443 ttaaattgttttcgtataagctataatctgttttcataagctatcttggagaacttatgaaaataagctaaaaatagcttatgaacaatgtcataagctg 39105542  T
Q  228 ttttcataa 236  Q
    |||||||||    
T  39105543 ttttcataa 39105551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 40426745 - 40426853
Alignment:
Q  130 taaattgtttttgtatttgctataagtggtttta-taagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgt 228  Q
    ||||||||||||||||||||| ||||  ||||   |||||| |||| ||||||||| |||  |||||| ||||| ||||||||||| || ||||||||||    
T  40426745 taaattgtttttgtatttgctgtaagctgtttccgtaagctgtcttggagaacttacgaaaataagcttaaaaaagcttatgaaaaatggcataagctgt 40426844  T
Q  229 tttcataag 237  Q
    |||||||||    
T  40426845 tttcataag 40426853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 29925820 - 29925931
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||| ||||| |||||||||| ||||  ||||||||| || |||||||||||||  |||| |||||||  |  ||||| | ||||||||||||    
T  29925820 ttaaattgtttctgtatgtgctataagttgtttacataagctatattggagaacttatgaaaataagttgaaaaaaacacatgaacattgtcataagctg 29925919  T
Q  228 ttttcataagtt 239  Q
    ||||||||||||    
T  29925920 ttttcataagtt 29925931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 3735202 - 3735138
Alignment:
Q  175 agagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||||||||||  |||||||||||| |||| |||||| ||||||||||||||||||| ||||    
T  3735202 agagaacttatgaagataagctgaaaaaagcttttgaaaattgtcataagctgttttcatcagtt 3735138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 12857398 - 12857318
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||||||||| || |||||||||  ||  |||||||||||| |||| |||||| ||||||||| ||||||||||||||    
T  12857398 ttttataagctatattggagaacttacaaaaataagctgaaaaaagcttgtgaaaattgtcataagttgttttcataagtt 12857318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 32009674 - 32009785
Alignment:
Q  132 aattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggctt-atgaaaagtgtcataagctgtt 229  Q
    ||||||| |||||| |||||||| | ||||| ||||||||| || |||||||||||||   ||| | ||||| |||| ||||||| ||||| ||||||||    
T  32009674 aattgttcttgtatatgctataaattgtttttataagctatattggagaacttatgaaaacaagttcaaaaaagctttatgaaaattgtcacaagctgtt 32009773  T
Q  230 ttcataagtttt 241  Q
    ||||||||||||    
T  32009774 ttcataagtttt 32009785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 37954696 - 37954773
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataa 236  Q
    ||||||||||||| || |||||| ||||||  |||| ||||||| ||| ||||||| | |||||||||||||||||||    
T  37954696 ttttataagctatattggagaacatatgaaaataagttgaaaaaagctaatgaaaattttcataagctgttttcataa 37954773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 43300865 - 43300965
Alignment:
Q  137 tttttgtatttgctataagtggtttta-taagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcata 235  Q
    ||||||||| | |||||||| |||||  ||||||||||| |||||||||||||  |||||||||| | ||||||  ||| ||||||| |||||||| |||    
T  43300865 tttttgtatatcctataagttgtttttgtaagctatcttggagaacttatgaaaataagctgaaacatgcttatataaaatgtcataggctgtttttata 43300964  T
Q  236 a 236  Q
    |    
T  43300965 a 43300965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 1465091 - 1465000
Alignment:
Q  148 gctataagtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||||  |||||||||||||||| ||| |||| ||||  |||||||||||   |||||||  | || |||||||||||||||||||||    
T  1465091 gctataagttattttataagctatcttggaggacttgtgaaaataagctgaaaacaacttatgagcaatgccataagctgttttcataagtt 1465000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 25461074 - 25461169
Alignment:
Q  133 attgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||| || ||||||| ||||| ||||||| | || ||||||| |||||  |||||||||||| | ||||||||| || |||||||||    
T  25461074 attgtttttgtatatgttataagttgttttcataagctctattggagaactgatgaaaataagctgaaaaacgtttatgaaaattgccataagctg 25461169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 42500298 - 42500222
Alignment:
Q  162 tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||||| || |||||||||||||  |||| ||||||| ||||||||||| |||| |||| ||||| ||||||||    
T  42500298 tataagctatattggagaacttatgaaaataagttgaaaaa-gcttatgaaaattgtcgtaagttgtttccataagtt 42500222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 2568636 - 2568747
Alignment:
Q  129 ttaaattgttttt-gtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagct 226  Q
    ||||||||||||| ||||  ||||||||| ||||| |||||||||| | |||| || |||||  |||||| ||||   |||||||| | |||||||||||    
T  2568636 ttaaattgtttttcgtataagctataagttgttttcataagctatcatggagagctaatgaaaataagctaaaaataacttatgaata-tgtcataagct 2568734  T
Q  227 gttttcataagtt 239  Q
    |||||||||||||    
T  2568735 gttttcataagtt 2568747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 7706054 - 7705978
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||||| || |||||||| ||||  ||||| |||||| ||   |||||| ||||||||||||||||||||||||    
T  7706054 ataagctatattggagaacttgtgaaaataagccgaaaaaagcaggtgaaaactgtcataagctgttttcataagtt 7705978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 34669773 - 34669709
Alignment:
Q  176 gagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagct-gttttcataagtt 239  Q
    |||||||| |||| ||||||||||||| ||||||||||| |||||| || | |||||||||||||    
T  34669773 gagaacttctgaaattaagctgaaaaaagcttatgaaaaatgtcattagttagttttcataagtt 34669709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 35446082 - 35446138
Alignment:
Q  176 gagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttc 232  Q
    |||||||||||||  |||||||||||| ||||| ||||| |||||||| ||||||||    
T  35446082 gagaacttatgaaaataagctgaaaaaagcttacgaaaaatgtcataaactgttttc 35446138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 9202804 - 9202725
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagttttc 242  Q
    ||||| ||||||  ||||||||||||  ||||||| |||  ||||||||| | ||||||||||||||| ||| |||||||    
T  9202804 ataagttatcttgaagaacttatgaaaataagctggaaacagcttatgaacaatgtcataagctgtttccattagttttc 9202725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 4014480 - 4014426
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtg 217  Q
    |||||||||||| |||||||||||||  |||||||||||  ||||||||| ||||    
T  4014480 ataagctatcttggagaacttatgaaaataagctgaaaacagcttatgaacagtg 4014426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 7984983 - 7985057
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataag 237  Q
    |||||||||||| ||||| |||||||  |||||||||||  ||||||||| |  |||| ||||||||||| ||||    
T  7984983 ataagctatcttggagaatttatgaaaataagctgaaaacagcttatgaacaacgtcacaagctgttttcttaag 7985057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 39477893 - 39477967
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttca 233  Q
    ||||||||||||| ||||||||||| ||||  ||||| ||||||  ||| |||||| |||||| |||||| ||||    
T  39477893 ttttataagctatgttagagaacttctgaaaataagcagaaaaaaacttttgaaaattgtcatcagctgtgttca 39477967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 2973557 - 2973524
Alignment:
Q  206 ttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||||| ||||||||||||||||||||||||    
T  2973557 ttatgaaaattgtcataagctgttttcataagtt 2973524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 3280771 - 3280696
Alignment:
Q  163 ataagctatcttagagaactt-atgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagt 238  Q
    |||||||||||| |||||||| |||||  ||| || ||||  ||||||||| | |||||||||||||||||||||||    
T  3280771 ataagctatctttgagaactttatgaaaataaactaaaaagagcttatgaaga-tgtcataagctgttttcataagt 3280696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 13697828 - 13697764
Alignment:
Q  150 tataagtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaa 214  Q
    ||||||| |||||||||||||| || ||||| |||||||  |||| |||||||  ||||||||||    
T  13697828 tataagttgttttataagctatgttggagaagttatgaaaataagttgaaaaaaacttatgaaaa 13697764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 32859762 - 32859703
Alignment:
Q  176 gagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataa 236  Q
    ||||| |||||||  ||||||||||||| |||||||||| |||| |||| |||||||||||    
T  32859762 gagaagttatgaaaataagctgaaaaag-cttatgaaaaatgtcgtaagttgttttcataa 32859703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 32861934 - 32861875
Alignment:
Q  176 gagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataa 236  Q
    ||||| |||||||  ||||||||||||| |||||||||| |||| |||| |||||||||||    
T  32861934 gagaagttatgaaaataagctgaaaaag-cttatgaaaaatgtcgtaagttgttttcataa 32861875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 42646685 - 42646757
Alignment:
Q  167 gctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||| ||||||||||| |  ||| || ||||| ||||||||||| |||| ||| || ||||||||||||    
T  42646685 gctatcttcgagaacttatggaaataaactaaaaaaagcttatgaaaaatgtcctaaacttttttcataagtt 42646757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 129 - 235
Target Start/End: Complemental strand, 17822956 - 17822849
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    |||||||||| || ||| |||||||||| ||||| |||||||||||| |||||||||||||  |||||| ||||| ||||||||||| ||||||||||||    
T  17822956 ttaaattgttattttatatgctataagttgttttcataagctatcttggagaacttatgaaaataagctaaaaaaagcttatgaaaaatgtcataagctg 17822857  T
Q  228 ttttcata 235  Q
    ||||||||    
T  17822856 ttttcata 17822849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 50681180 - 50681069
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggttt-tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| |||||||||| |||| |||||||||| || ||||| |||||||  |||  ||||||| ||||||||||| |||||| | |||    
T  50681180 ttaaattgtttttgtatatgctataagttgtttatataagctatattggagaaattatgaaaataaattgaaaaaagcttatgaaaattgtcattaactg 50681081  T
Q  228 ttttcataagtt 239  Q
    ||||||||||||    
T  50681080 ttttcataagtt 50681069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 21731742 - 21731636
Alignment:
Q  134 ttgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttc 232  Q
    |||||||||||| |||||||||| ||||| ||||||||| || ||||| |||||||  |||| ||||||| | ||||||||| ||| |||||||||||||    
T  21731742 ttgtttttgtatgtgctataagttgtttttataagctatattggagaatttatgaaagtaagttgaaaaaagtttatgaaaattgtgataagctgttttc 21731643  T
Q  233 ataagtt 239  Q
    |||||||    
T  21731642 ataagtt 21731636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 29657393 - 29657474
Alignment:
Q  158 gttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||| ||||||| |||||||| ||||||| ||||||| ||||| |||| |||||| ||||||||||||||||||||||||    
T  29657393 gttttacaagctatattagagaagttatgaaattaagctcaaaaatgcttttgaaaattgtcataagctgttttcataagtt 29657474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 30668426 - 30668347
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||||||||||| || |  ||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  30668426 ttttataagctatcttggatagtttatgaaattaagctgaaaaag-cttatgaaaagtgtcataagctgttttcacaagtt 30668347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 13126630 - 13126556
Alignment:
Q  165 aagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||||| |||||||||||||  |||||||||||| |||||||| || |||||||||||||||| |||||||    
T  13126630 aagctatcttcgagaacttatgaaaataagctgaaaaaagcttatgataaatgtcataagctgtttttataagtt 13126556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 55414503 - 55414406
Alignment:
Q  137 tttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttca 233  Q
    |||||| || |||||||| | ||||| ||||| |||||| |||||||||||||  |||| ||||||| ||||||||||| ||||||||||||||||||    
T  55414503 tttttgcatatgctataaattgttttcataagttatcttggagaacttatgaaaataagttgaaaaaagcttatgaaaaatgtcataagctgttttca 55414406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 22030190 - 22030293
Alignment:
Q  137 tttttgtatttgctataagtggtt-ttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcata 235  Q
    ||||||||| |||||||||| ||| ||| ||| ||  ||||||||||||||||  ||| |||| ||| |||| |||||| ||||||||||||||||||||    
T  22030190 tttttgtatatgctataagttgttcttacaagttaaattagagaacttatgaaaataacctgagaaaagcttttgaaaattgtcataagctgttttcata 22030289  T
Q  236 agtt 239  Q
    ||||    
T  22030290 agtt 22030293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 7839450 - 7839344
Alignment:
Q  131 aaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgtt 229  Q
    ||||||||||||||| |||||||| | ||||| ||||||||  ||  |||||||| |||  |||| ||||||| ||||||||||| ||||||||| ||||    
T  7839450 aaattgtttttgtatatgctataaattgtttttataagctagattgaagaacttacgaaaataagttgaaaaaagcttatgaaaattgtcataagttgtt 7839351  T
Q  230 ttcataa 236  Q
    |||||||    
T  7839350 ttcataa 7839344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 53294205 - 53294091
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| |||||||||| ||||| |||| |||| ||||||||||||||||   ||||||||||  |||| ||||||   ||||||  ||    
T  53294205 ttaaattgtttttgtatatgctataagttgtttttataaactatattagagaacttatgaaaacaagctgaaaatagcttttgaaaaccatcataatttg 53294106  T
Q  228 ttttcataagttttc 242  Q
    ||||||| |||||||    
T  53294105 ttttcatgagttttc 53294091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 50662818 - 50662718
Alignment:
Q  140 ttgtatttgctataagtggttt-tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagt 238  Q
    |||||| |||||||||| |||| |||||||||| || ||||| || ||||  |||| ||||||| ||||||||||| |||||| | ||||||||||||||    
T  50662818 ttgtatatgctataagttgtttatataagctatattggagaaattgtgaaaataagttgaaaaaagcttatgaaaattgtcattaactgttttcataagt 50662719  T
Q  239 t 239  Q
    |    
T  50662718 t 50662718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 54426053 - 54426133
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||| |||| || |||||||||||||  |||  ||||||| ||||||||||| ||||||||||||||||| ||||||    
T  54426053 ttttataatctatattggagaacttatgaaaataacttgaaaaaagcttatgaaaattgtcataagctgttttcctaagtt 54426133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 2244032 - 2244133
Alignment:
Q  134 ttgtttttgtatt-tgctataagtggtttta---taagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgtt 229  Q
    ||||||||||||| |||||||||| ||||||   |||||||| || |||||||||||||  |||| ||||||| | ||||||| | ||||||||||||||    
T  2244032 ttgtttttgtattatgctataagttgttttaatataagctatattggagaacttatgaaaataaggtgaaaaaagtttatgaatattgtcataagctgtt 2244131  T
Q  230 tt 231  Q
    ||    
T  2244132 tt 2244133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 25904280 - 25904205
Alignment:
Q  162 tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataag 237  Q
    |||||||| | || |||||||||| ||  |||||||||||| ||||||||||| || |||||||||||||||||||    
T  25904280 tataagctgttttggagaacttataaaaataagctgaaaaaagcttatgaaaaatggcataagctgttttcataag 25904205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 55302263 - 55302342
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagttttc 242  Q
    ||||||||| || || ||||||||||  |||||||||||| ||||| ||||| |||||||||||||||  ||||||||||    
T  55302263 ataagctatgttggaaaacttatgaaaataagctgaaaaaagcttacgaaaattgtcataagctgtttctataagttttc 55302342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 26924 - 26848
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataa 236  Q
    ||||||||||||| || |||||||||||||  ||| |||||||| |||| |||||  |||||||||||||||||||||    
T  26924 ttttataagctatattggagaacttatgaaaataatctgaaaaa-gcttgtgaaatttgtcataagctgttttcataa 26848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 46588157 - 46588053
Alignment:
Q  137 tttttgtatttgctataagtggtttt--ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcat 234  Q
    ||||| ||| |||||||||| |||||  ||||| ||| || |||||||||||||  |||| || |||||||||||||||| ||||||||| | ||||| |    
T  46588157 tttttatatatgctataagttgttttttataagttatattggagaacttatgaaaataagttggaaaaggcttatgaaaattgtcataagttattttcgt 46588058  T
Q  235 aagtt 239  Q
    |||||    
T  46588057 aagtt 46588053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 16200066 - 16199991
Alignment:
Q  135 tgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttat 209  Q
    ||||||||||| |||||||||  ||||| |||||||||||| ||| |||||||||  |||||| ||||||||||||    
T  16200066 tgtttttgtatatgctataagctgttttcataagctatcttggaggacttatgaaaataagctaaaaaaggcttat 16199991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 228
Target Start/End: Original strand, 41512633 - 41512730
Alignment:
Q  132 aattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgt 228  Q
    |||||||||||  | |||||||||| ||||| ||||||| |||   ||||||||||||  |||| ||| ||| ||||||||||||||| |||||||||    
T  41512633 aattgtttttgcgtatgctataagttgttttcataagctttctggaagaacttatgaaaataagatgataaaagcttatgaaaagtgttataagctgt 41512730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 46592269 - 46592204
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 224  Q
    ||||||||| ||| || |||||||||||||  |||| || |||||||||||||||| |||||||||    
T  46592269 ttttataagttatattggagaacttatgaaaataagttggaaaaggcttatgaaaattgtcataag 46592204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 21523585 - 21523644
Alignment:
Q  176 gagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataa 236  Q
    ||||| |||||||  ||||||||||||| |||||||||| ||||||||| |||||||||||    
T  21523585 gagaagttatgaaaataagctgaaaaag-cttatgaaaaatgtcataagttgttttcataa 21523644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 39603230 - 39603150
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||||| ||| || |||||||||||||  |||  | ||||| |||||| |||| ||||||||||||||||| ||||||    
T  39603230 ttttataaggtatattggagaacttatgaaaataacttaaaaaaagcttataaaaattgtcataagctgttttcctaagtt 39603150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 41336802 - 41336850
Alignment:
Q  191 taagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||| ||||||| ||||||||||| ||||||||||||||||| ||||||    
T  41336802 taagttgaaaaaagcttatgaaaactgtcataagctgttttcttaagtt 41336850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 237
Target Start/End: Original strand, 2996554 - 2996660
Alignment:
Q  131 aaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgtt 229  Q
    ||||||||||| |||  | ||||||| ||||| |||||||||||| |||| | ||||||  |||| ||||||| ||||||| | | ||||||||| ||||    
T  2996554 aaattgtttttatataagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggaca-tgtcataagttgtt 2996652  T
Q  230 ttcataag 237  Q
    ||||||||    
T  2996653 ttcataag 2996660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 35571718 - 35571619
Alignment:
Q  133 attgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgtttt 231  Q
    |||||||| ||||  ||||||||  ||||| ||||||||||||||||||||| ||||  |||| |||||   ||| ||||| ||||| ||||||||||||    
T  35571718 attgttttcgtataagctataagctgttttcataagctatcttagagaacttgtgaaaataagttgaaaccagctcatgaacagtgtaataagctgtttt 35571619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 1407970 - 1408040
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaag-gcttatgaaaagtgtcataagctgttttc 232  Q
    |||||||||||  || || |||||||  ||||||||||||  ||||||||||| |||||||||||||||||    
T  1407970 ataagctatctaggaaaatttatgaagataagctgaaaaacagcttatgaaaaatgtcataagctgttttc 1408040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 24169279 - 24169345
Alignment:
Q  165 aagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgtttt 231  Q
    |||||||||| |||| ||||||||  |||| |||||||  |||||||||| ||||||||||| ||||    
T  24169279 aagctatcttggagagcttatgaaaataagttgaaaaaatcttatgaaaaatgtcataagctatttt 24169345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 37864043 - 37863935
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgt 228  Q
    ||||||||||||||| |  | ||||||  |||| |||||||||||| | ||  ||||||||| ||| ||||||   ||||||||  ||||||||||||||    
T  37864043 ttaaattgtttttgtttaagatataagctgtttcataagctatcttggtgaggttatgaatt-aaggtgaaaacaacttatgaac-gtgtcataagctgt 37863946  T
Q  229 tttcataagtt 239  Q
    |||||||||||    
T  37863945 tttcataagtt 37863935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 55064855 - 55064925
Alignment:
Q  169 tatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||| |||||||||||||  |||| ||||||| |||  |||||| ||||||||| |||||||| |||||    
T  55064855 tatcttggagaacttatgaaaataagatgaaaaaagctattgaaaaatgtcataagttgttttcaaaagtt 55064925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 25332753 - 25332858
Alignment:
Q  129 ttaaattgtttttgtatttgctataag-tggttttataagctatcttag-agaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagct 226  Q
    |||||||||||||||||  ||| |||| |  |||||||||||||||||  ||||||||||||  |||||||||||   |||||||| | || |||||| |    
T  25332753 ttaaattgtttttgtataagctctaagctatttttataagctatcttatcagaacttatgaaaataagctgaaaacaacttatgaataatgccataagtt 25332852  T
Q  227 gttttc 232  Q
    ||||||    
T  25332853 gttttc 25332858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 233
Target Start/End: Complemental strand, 54069508 - 54069403
Alignment:
Q  129 ttaaattgtttttgtatttgctataa-gtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| ||||||||  || ||||||||| ||| ||  ||||| ||||||  |||| | ||||  ||||||||||| |||  |||||||    
T  54069508 ttaaattgtttttgtatatgctataatttgtttttataagttatattgaagaacatatgaaaataagttaaaaacagcttatgaaaattgttgtaagctg 54069409  T
Q  228 ttttca 233  Q
    ||||||    
T  54069408 ttttca 54069403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 15177293 - 15177233
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtgg-ttttataagctatcttagagaacttatgaa 188  Q
    |||||||||| || ||| |||||||||||| |||||||||||||  ||||||||| |||||    
T  15177293 ttaaattgttcttctatgtgctataagtggtttttataagctatactagagaactaatgaa 15177233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 20109611 - 20109675
Alignment:
Q  175 agagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||||||| ||  | ||| ||||||  |||||||||| |||||||||||||||||| |||||    
T  20109611 agagaacttataaaaatcagcagaaaaaaacttatgaaaaatgtcataagctgttttcaaaagtt 20109675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 43886159 - 43886112
Alignment:
Q  191 taagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||||||  ||||||||||| || |||||||||||||||||||||    
T  43886159 taagctgaaaatagcttatgaaaa-tgccataagctgttttcataagtt 43886112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 49939979 - 49939931
Alignment:
Q  191 taagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||||||  ||||||||| | ||||||||||| ||||||||||||    
T  49939979 taagctgaaaacagcttatgaacaatgtcataagctcttttcataagtt 49939931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 56249566 - 56249613
Alignment:
Q  191 taagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||| ||||||| ||||||||||| |||||||||||||||| |||||||    
T  56249566 taagttgaaaaaagcttatgaaaa-tgtcataagctgttttgataagtt 56249613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 49938734 - 49938837
Alignment:
Q  137 tttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcata 235  Q
    ||||||||| || ||||||| ||||| ||||||||| ||||||||||||||||  |||| ||||||| |||| |||||| ||||||||||||||||||||    
T  49938734 tttttgtatatgttataagttgtttttataagctatattagagaacttatgaaaataagttgaaaaaagcttttgaaaattgtcataagctgttttcata 49938833  T
Q  236 agtt 239  Q
    ||||    
T  49938834 agtt 49938837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 15477578 - 15477655
Alignment:
Q  162 tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||| ||| ||||||||||||||||| |||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  15477578 tataagttatattagagaacttatgaatataagctgaaaaaagcttttgaaaattgtcataagctgttttcataagtt 15477655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 236
Target Start/End: Complemental strand, 24915142 - 24915034
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| |||||||||  ||||| ||||||| |||| |||||||| ||||  |||| ||||||| ||||||||||| ||||||||| ||    
T  24915142 ttaaattgtttttgtatatgctataagctgttttcataagctgtcttggagaacttgtgaaaataagttgaaaaaagcttatgaaaaatgtcataagttg 24915043  T
Q  228 ttttcataa 236  Q
    |||||||||    
T  24915042 ttttcataa 24915034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 3234106 - 3233995
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| |||||||||| ||||| ||||||||| || |||||||||||||  ||||  ||||||  |||||||||| ||| ||||| ||    
T  3234106 ttaaattgtttttgtatatgctataagttgtttttataagctatattggagaacttatgaaaataagtagaaaaaaacttatgaaaactgttataagttg 3234007  T
Q  228 ttttcataagtt 239  Q
    ||||||||||||    
T  3234006 ttttcataagtt 3233995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 14576744 - 14576634
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| |||||||| |  |||| ||||||||| ||||||||||| ||||  |||||||||||| |||| |||||| ||||||||||||    
T  14576744 ttaaattgtttttgtatatgctataatttttttttataagctatattagagaactt-tgaaaataagctgaaaaaagcttttgaaaattgtcataagctg 14576646  T
Q  228 ttttcataagtt 239  Q
    |||||| |||||    
T  14576645 ttttcacaagtt 14576634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 17603475 - 17603364
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| |||||||||| ||||| ||||||||| || |||||||| ||||  |||| || |||| | ||||||||| ||||||||||||    
T  17603475 ttaaattgtttttgtatatgctataagttgtttttataagctatattggagaacttctgaaaataagttgtaaaaagtttatgaaaattgtcataagctg 17603376  T
Q  228 ttttcataagtt 239  Q
    ||||| ||||||    
T  17603375 ttttcgtaagtt 17603364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 37631649 - 37631536
Alignment:
Q  130 taaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgt 228  Q
    |||||||||||||| | || ||| || || |||| |||||||| || |||||||||||||  |||||||||||| |||| |||||| ||||| |||||||    
T  37631649 taaattgtttttgtgtatgatattagctgtttttgtaagctatattggagaacttatgaaaataagctgaaaaaagcttgtgaaaattgtcagaagctgt 37631550  T
Q  229 tttcataagttttc 242  Q
    ||||||||||||||    
T  37631549 tttcataagttttc 37631536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 30286611 - 30286499
Alignment:
Q  129 ttaaattgtttttgtat-ttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagct 226  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||| ||  |||||| |  || || || ||||||| ||||||||||| |||||||||||    
T  30286611 ttaaattgtttttgtatgttgctataagttgtttttataagctattttgaagaactaagaaaatttagttgaaaaaagcttatgaaaattgtcataagct 30286512  T
Q  227 gttttcataagtt 239  Q
    |||||||||||||    
T  30286511 gttttcataagtt 30286499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 242
Target Start/End: Original strand, 27976574 - 27976697
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaactt---------atgaatttaagctgaaaaaggcttatgaaaagtgt 218  Q
    ||||||||||||||||| |||||||||| ||||| |||||||||||| ||||||||         |||||  |||||||||||| ||||||||||| |||    
T  27976574 ttaaattgtttttgtatatgctataagttgttttcataagctatcttcgagaacttaatgaaataatgaaaataagctgaaaaaagcttatgaaaaatgt 27976673  T
Q  219 cataagctgttttcataagttttc 242  Q
    |||||||| |||||| ||||||||    
T  27976674 cataagctattttcaaaagttttc 27976697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 51688685 - 51688782
Alignment:
Q  130 taaattgtttttgtatttgctataagtggtttta-taagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    |||||||||||||||  |||||||||| |||||  ||||||||| | |||| |||||||| |||||||||||||  ||| |||||||||||||||||||    
T  51688685 taaattgtttttgtacatgctataagttgttttcgtaagctatcgtggaga-cttatgaaattaagctgaaaaaaacttctgaaaagtgtcataagctg 51688782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 2295106 - 2295186
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||||||||| | ||||||||| ||||  |||| |||| |  ||||||||||| ||||||||||||||||||||||||    
T  2295106 ttttataagctatatcagagaacttgtgaaaataagttgaatagagcttatgaaaattgtcataagctgttttcataagtt 2295186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 234
Target Start/End: Complemental strand, 51929628 - 51929524
Alignment:
Q  131 aaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgtt 229  Q
    ||||||||||| ||| |||  |||| || |||||||| |||| || ||||||||||| |  |||| ||||||| ||||||||||| ||||||||||||||    
T  51929628 aaattgtttttatatatgccttaagctgtttttataaactatattggagaacttatggaaataagttgaaaaaagcttatgaaaattgtcataagctgtt 51929529  T
Q  230 ttcat 234  Q
    |||||    
T  51929528 ttcat 51929524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 473143 - 473253
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    |||||||||||| || | |||||||||| ||||| ||||| | | || |||||||||||||  |||| ||||||| ||||||||||| ||| |||||||     
T  473143 ttaaattgttttcgtgtatgctataagttgtttttataagttctattggagaacttatgaaaataagttgaaaaaagcttatgaaaattgt-ataagctt 473241  T
Q  228 ttttcataagtt 239  Q
    ||||||||||||    
T  473242 ttttcataagtt 473253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 13809977 - 13810088
Alignment:
Q  129 ttaaattgtttttgtatttgctata-agtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| ||||||| | || |||||||| |||| ||||||||||| ||||  |||||| | |||  ||| |||||| |||||||| |||    
T  13809977 ttaaattgtttttgtatatgctatatattgtttttataaactatattagagaacttgtgaaaataagctaagaaaaacttttgaaaattgtcataaactg 13810076  T
Q  228 ttttcataagtt 239  Q
    | ||||||||||    
T  13810077 tattcataagtt 13810088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 37473418 - 37473493
Alignment:
Q  164 taagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||| |||||| |||||||||||||  ||||||| |||| ||||||||||| ||||||||| |||||||| |||||    
T  37473418 taagttatcttggagaacttatgaaaataagctggaaaaagcttatgaaaaatgtcataagttgttttcaaaagtt 37473493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 27970387 - 27970274
Alignment:
Q  128 attaaattgtttttgtatttgctataagtggtttt-ataagctatcttagag-aacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagc 225  Q
    |||||||||||||||||| |||||||||| ||||  |||| |||| || | | ||||||||||  ||| |||||||| ||||||||||| |||||||| |    
T  27970387 attaaattgtttttgtatatgctataagttgtttccataaactatttttggggaacttatgaaaataaactgaaaaaagcttatgaaaaatgtcataaac 27970288  T
Q  226 tgttttcataagtt 239  Q
     ||||| |||||||    
T  27970287 cgtttttataagtt 27970274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 6556950 - 6557062
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggc-ttatgaaaagtgtcataagct 226  Q
    ||||||||||||||||| || ||||||| ||||| ||||| ||| ||| |||||||||||   |||||| |||||  | || |||||| |||||||||||    
T  6556950 ttaaattgtttttgtatatgttataagttgtttttataagttatattaaagaacttatgacaataagctaaaaaaaaccttttgaaaactgtcataagct 6557049  T
Q  227 gttttcataagtt 239  Q
     ||||||||||||    
T  6557050 attttcataagtt 6557062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 29904761 - 29904841
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||| |||| ||| ||||||||||||  |||| ||||||| |||| |||||| || ||||||||||||| |||||||    
T  29904761 ttttataaactatattatagaacttatgaaaataaggtgaaaaaagcttttgaaaattgccataagctgtttttataagtt 29904841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 42174841 - 42174933
Alignment:
Q  136 gtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    |||||||||| |||||||||| ||||| ||||| ||| || |||||||||||||  |||| | ||||  ||||||||||| ||||||||||||    
T  42174841 gtttttgtatatgctataagttgtttttataagttatattggagaacttatgaaaataagttaaaaacagcttatgaaaattgtcataagctg 42174933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 41184741 - 41184630
Alignment:
Q  129 ttaaattgtttttgtatttgctataagt-ggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| |  ||||| | |||||||||  | || || || ||||||||||  |||| |||||||  |||||||||| |||||||||||     
T  41184741 ttaaattgtttttgtatatattataatttggttttatataccatattggaaaacttatgaaaataagttgaaaaaaacttatgaaaattgtcataagcta 41184642  T
Q  228 ttttcataagtt 239  Q
    ||||||||||||    
T  41184641 ttttcataagtt 41184630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 41195284 - 41195187
Alignment:
Q  129 ttaaattgtttttgtatttgctat-aagtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagct 226  Q
    ||||| ||||||||||| | |||| || || ||| |||| ||||||| |||||||||||||  |||||||||||| |||||| |||| |||||||||||    
T  41195284 ttaaactgtttttgtatatactatcaactgttttcataaactatcttggagaacttatgaaaataagctgaaaaaagcttattaaaa-tgtcataagct 41195187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 5720935 - 5721015
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctg-aaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||||||||| ||||||||| ||||||  | ||||| |||||  |||||| ||| ||||||||||||||||||||||||    
T  5720935 ttttataagctatattagagaacatatgaaaatcagctgaaaaaatacttatg-aaattgtcataagctgttttcataagtt 5721015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 5741616 - 5741696
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctg-aaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||||||||| ||||||||||||||||  | ||||| |||||  |||||| ||| ||||||||| ||||||||||||||    
T  5741616 ttttataagctatattagagaacttatgaaaatcagctgaaaaaatacttatg-aaattgtcataagttgttttcataagtt 5741696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 27820427 - 27820330
Alignment:
Q  130 taaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagct 226  Q
    |||||||||| |||||  |||||| | || |||||||||||||||| ||||| |||||||  |||||||||||  ||||||||| | |||| ||||||    
T  27820427 taaattgtttatgtataagctatatgctgtttttataagctatcttggagaatttatgaaaataagctgaaaatagcttatgaacaatgtcgtaagct 27820330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 38503518 - 38503445
Alignment:
Q  166 agctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||||| |||||||||||||  |||||||||||   |||||||| | ||||||| ||||||| ||||||||    
T  38503518 agctatcttggagaacttatgaaaataagctgaaaacaacttatgaacaatgtcataggctgtttccataagtt 38503445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 40977487 - 40977383
Alignment:
Q  137 tttttgtatttgctataag--tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcat 234  Q
    ||||||||| |||||||||  |  |||||||||| || | ||||||| ||||||  ||||||| |||| |||| |||||| ||||||||  |||||||||    
T  40977487 tttttgtatatgctataaggttaattttataagccatataagagaacatatgaaaataagctggaaaaagcttttgaaaattgtcataaattgttttcat 40977388  T
Q  235 aagtt 239  Q
    |||||    
T  40977387 aagtt 40977383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 47432075 - 47432160
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaa 214  Q
    |||||||||||||| || |||||||||  |||||||||| ||| ||  |||| |||||||  |||||||||||| |||| ||||||    
T  47432075 ttaaattgtttttgaatatgctataaggtgttttataagttatattgaagaatttatgaaaataagctgaaaaaagcttgtgaaaa 47432160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 2777874 - 2777981
Alignment:
Q  132 aattgtttttgtatttgctataagtggtttta-taagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttt 230  Q
    |||||| |||||||  ||||||||  |||||| |||| || ||| |||||||||||||  ||||||||||| |||||||||| |  |||||||| || ||    
T  2777874 aattgtctttgtataagctataagctgttttaataagttaacttggagaacttatgaaaataagctgaaaacggcttatgaata-cgtcataagttggtt 2777972  T
Q  231 tcataagtt 239  Q
    |||||||||    
T  2777973 tcataagtt 2777981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 7137054 - 7136979
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||||||| |||||||||||||  |||||||||||   |||||||| | ||||||||||  ||||||||||||    
T  7137054 ataagctatcttggagaacttatgaaaataagctgaaaataacttatgaata-tgtcataagcgattttcataagtt 7136979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 37842427 - 37842336
Alignment:
Q  148 gctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||||| ||||| ||||||||||||  ||||||||| ||  |||||||||||  ||||||||| | |||||| || ||||||||||||||    
T  37842427 gctataagttgttttcataagctatcttgaagaacttataaaaataagctgaaaactgcttatgaaca-tgtcattagatgttttcataagtt 37842336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 36872716 - 36872806
Alignment:
Q  134 ttgtttttgtatttgctataag-tggttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataag 224  Q
    |||||||||||| ||||||||| || ||||| ||||||| ||  ||||||||||||  |||| ||||||| |||||| |||| |||||||||    
T  36872716 ttgtttttgtatgtgctataagttgtttttacaagctatattgcagaacttatgaaaataagttgaaaaa-gcttatcaaaattgtcataag 36872806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 39596578 - 39596633
Alignment:
Q  131 aaattgtttttgtatttgctataag-tggttttataagctatcttagagaacttat 185  Q
    |||||||||||||||  |||||||| ||||||||||||||||||| |||| |||||    
T  39596578 aaattgtttttgtataagctataagatggttttataagctatcttggagagcttat 39596633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 27820253 - 27820180
Alignment:
Q  162 tataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataa 236  Q
    |||||||||||||| |||| |||||||  |||||||||||  ||||||||| | ||| ||||||| |||||||||    
T  27820253 tataagctatcttaaagaatttatgaaaataagctgaaaatagcttatgaacaatgtaataagct-ttttcataa 27820180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 49888749 - 49888819
Alignment:
Q  132 aattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaa 201  Q
    ||||||||| ||||  ||||| ||| ||||| ||||||||||||||||||||||||||  ||||| |||||    
T  49888749 aattgttttcgtataagctattagttgttttcataagctatcttagagaacttatgaaaataagccgaaaa 49888819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 36872299 - 36872352
Alignment:
Q  183 tatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataa 236  Q
    |||||| ||||| ||||||| ||||||||||| | | |||||||||||||||||    
T  36872299 tatgaaattaagttgaaaaaagcttatgaaaattataataagctgttttcataa 36872352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 1432497 - 1432605
Alignment:
Q  132 aattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttt 230  Q
    |||||||||| |||  ||||||| | ||||| |||| ||||||| |||||||||||||  |||||| |  | | |||||||| | ||||||| ||| |||    
T  1432497 aattgtttttttataagctataaattgttttcataaactatcttggagaacttatgaaagtaagctaagtatgtcttatgaacaatgtcatacgctattt 1432596  T
Q  231 tcataagtt 239  Q
    |||||||||    
T  1432597 tcataagtt 1432605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 3887692 - 3887612
Alignment:
Q  159 ttttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||| |||||| ||  |||||||||||||  |||| | ||||  ||||||||| | ||||||||| ||||||||||||||    
T  3887692 ttttacaagctagctaggagaacttatgaaaataagttaaaaacagcttatgaacaatgtcataagatgttttcataagtt 3887612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 10199464 - 10199389
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||||| ||||||| ||||||||  |||||||||||   |||||||| | ||||||||||| ||||||| ||||    
T  10199464 ataagctattttagagagcttatgaaaataagctgaaaacaacttatgaaca-tgtcataagctattttcatgagtt 10199389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 10744315 - 10744390
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||| ||||||||||||||| ||  |||| ||||||  ||||||||| | || ||||||||||||||| |||||    
T  10744315 ataagctgtcttagagaacttataaaaataagatgaaaacagcttatgaaca-tgccataagctgttttcacaagtt 10744390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 45975704 - 45975776
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcata 235  Q
    |||||||||||| ||||| |||||||  |||||||||||  ||||||||| | ||| |||  |||||||||||    
T  45975704 ataagctatcttggagaatttatgaaaataagctgaaaacagcttatgaataatgttatacactgttttcata 45975776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 51695551 - 51695475
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||||||| ||||| |||||||  |||||||||||  ||||||||| | ||| ||||| |||||  |||||||    
T  51695551 ataagctatcttggagaatttatgaaaataagctgaaaatagcttatgaacaatgtgataagttgtttatataagtt 51695475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 34430550 - 34430447
Alignment:
Q  131 aaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgtt 229  Q
    ||||||||||||||| || ||||||  ||||| |||||||||||| ||||| |||||||  |||||||||||| |||||||| || ||||||||||||||    
T  34430550 aaattgtttttgtatatgttataaggtgttttcataagctatcttggagaagttatgaaaataagctgaaaaaagcttatgataaatgtcataagctgtt 34430451  T
Q  230 ttca 233  Q
    ||||    
T  34430450 ttca 34430447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 9763574 - 9763644
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttca 233  Q
    ||||||||| ||  |||||||||||| ||||| ||||||| |||||| |||||||||||||||||||||||    
T  9763574 ataagctatattgtagaacttatgaaattaagttgaaaaaagcttatcaaaagtgtcataagctgttttca 9763644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 237
Target Start/End: Complemental strand, 9093647 - 9093538
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    |||||||||||| ||||  ||||||||  ||||| ||||||| |||||||||||||| |||  |||||||||||  | |||| || | |||||||||||     
T  9093647 ttaaattgttttcgtataagctataagctgttttcataagctgtcttagagaacttaagaaaataagctgaaaacaggttattaacaatgtcataagcta 9093548  T
Q  228 ttttcataag 237  Q
    ||||||||||    
T  9093547 ttttcataag 9093538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 20368268 - 20368161
Alignment:
Q  132 aattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttt 230  Q
    ||||||||||||||  | ||||||| ||||| ||||||| |||| |||||||||||||  |||| |||||   ||||||||| | ||||||||| |||||    
T  20368268 aattgtttttgtatgagttataagttgttttcataagctttcttggagaacttatgaaaataagttgaaactagcttatgaaca-tgtcataagttgttt 20368170  T
Q  231 tcataagtt 239  Q
    |||||||||    
T  20368169 tcataagtt 20368161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 31813175 - 31813251
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||||||| |||||| ||||||  ||||||||||| |||||||||| | | ||||||||  ||||||||||||    
T  31813175 ataagctatcttggagaacatatgaaaataagctgaaaacggcttatgaacaatctcataagcaattttcataagtt 31813251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 2735048 - 2735159
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||| |||||||||   |||||||  ||||| |||||| |||||  | ||||||||||  ||||| |||||  ||||||||||| |||||||||| |    
T  2735048 ttaaattatttttgtataatctataagctgttttcataagcaatcttgaacaacttatgaaaataagccgaaaacagcttatgaaaaatgtcataagccg 2735147  T
Q  228 ttttcataagtt 239  Q
    ||||||||||||    
T  2735148 ttttcataagtt 2735159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 6536597 - 6536680
Alignment:
Q  132 aattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaa 214  Q
    |||||||||||||| |||||||||| ||||| | ||||||| || ||||| |||||||  |||| ||||||| |||||||||||    
T  6536597 aattgtttttgtatatgctataagttgtttttagaagctatattggagaatttatgaaaataagttgaaaaaagcttatgaaaa 6536680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 6909963 - 6909892
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaa 199  Q
    ||||||||||||||||| |||||||||| ||||| ||||  |||||| ||||| ||||||| ||||||||||    
T  6909963 ttaaattgtttttgtatatgctataagttgttttcataacatatcttggagaatttatgaaattaagctgaa 6909892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 35070708 - 35070630
Alignment:
Q  161 ttataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    ||||||||||| || |||||||||||||   ||||  ||||| |||| |||||| ||||||||||||||||| ||||||    
T  35070708 ttataagctattttggagaacttatgaaaacaagcccaaaaaagcttgtgaaaattgtcataagctgttttcgtaagtt 35070630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 242
Target Start/End: Original strand, 24626274 - 24626380
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctg 227  Q
    ||||||||||||||||| | |||||||| ||||| |||||||||||| ||| | |||        |||||||||| | ||||||| || |||||||||||    
T  24626274 ttaaattgtttttgtatattctataagttgttttcataagctatcttggagtaatta--------agctgaaaaaagtttatgaagagcgtcataagctg 24626365  T
Q  228 ttttcataagttttc 242  Q
    |||||| ||||||||    
T  24626366 ttttcaaaagttttc 24626380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 232
Target Start/End: Original strand, 35099019 - 35099119
Alignment:
Q  132 aattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttt 230  Q
    |||||||||||||| || ||||||| ||||| |||||||||||||||| | || ||||  |||| |||||||  |||| ||||| |||||| ||||||||    
T  35099019 aattgtttttgtatatgttataagttgttttcataagctatcttagagtatttttgaaaataagttgaaaaa-acttacgaaaaatgtcattagctgttt 35099117  T
Q  231 tc 232  Q
    ||    
T  35099118 tc 35099119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 236
Target Start/End: Original strand, 18076175 - 18076290
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatctt--aga-----gaacttatgaatttaagctgaaaaaggcttatgaaaagtgtca 220  Q
    ||||||||||||| || ||||||||||| ||||| ||||||||| ||  |||     |||||||||||| |||| ||||||  ||| ||||||| |||||    
T  18076175 ttaaattgtttttctaattgctataagttgtttttataagctatattgaagaactaagaacttatgaatataagttgaaaacagctcatgaaaattgtca 18076274  T
Q  221 taagctgttttcataa 236  Q
    ||||||| ||||||||    
T  18076275 taagctggtttcataa 18076290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 31624108 - 31624179
Alignment:
Q  167 gctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||| ||||| |||||||  |||| ||||||  ||||||||| | ||||||||||||||||||||||||    
T  31624108 gctatcttggagaaattatgaaaataagttgaaaacagcttatgaaca-tgtcataagctgttttcataagtt 31624179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 9912234 - 9912171
Alignment:
Q  176 gagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||||||||  |||||| ||||  ||||||||| | |||||||||||| |||||||||||    
T  9912234 gagaacttatgaaaataagctcaaaacagcttatgaacaatgtcataagctggtttcataagtt 9912171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 837307 - 837234
Alignment:
Q  129 ttaaattgtttttgtatttgctataagtggtttt-ataagctatcttagagaacttatgaatttaagctgaaaa 201  Q
    |||||||||||| || |  ||||||||| ||||| || ||||||||| |||||||||||||  |||||||||||    
T  837307 ttaaattgttttggtgtaagctataagtagttttcattagctatcttggagaacttatgaaaataagctgaaaa 837234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 848022 - 848079
Alignment:
Q  182 ttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagtt 239  Q
    |||||||  |||||||||||| ||||| ||||| |||||||||| ||||| |||||||    
T  848022 ttatgaaaataagctgaaaaaagcttaagaaaaatgtcataagcagtttttataagtt 848079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 247
Target Start/End: Original strand, 58756 - 58840
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagttttcgaaaa 247  Q
    ||||||||| ||  |||||||||||| ||||| ||||||| ||||||||||| |||||||| ||| |||||||| ||||| ||||    
T  58756 ataagctatgttgaagaacttatgaaattaagttgaaaaaagcttatgaaaattgtcataaactgctttcataaattttcaaaaa 58840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 22245 - 22324
Alignment:
Q  163 ataagctatcttagagaacttatgaatttaagctgaaaaaggcttatgaaaagtgtcataagctgttttcataagttttc 242  Q
    ||||||||| || || ||||||||||  |||||||||||| ||||| ||||| |||||||||||||||  ||||||||||    
T  22245 ataagctatgttggaaaacttatgaaaataagctgaaaaaagcttacgaaaattgtcataagctgtttctataagttttc 22324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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