View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13981_high_9 (Length: 218)

Name: NF13981_high_9
Description: NF13981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13981_high_9
NF13981_high_9
[»] chr7 (3 HSPs)
chr7 (7-97)||(35771052-35771142)
chr7 (160-202)||(35770947-35770989)
chr7 (11-45)||(35770459-35770493)
[»] chr2 (2 HSPs)
chr2 (7-97)||(4385999-4386089)
chr2 (160-202)||(4385894-4385936)
[»] chr3 (3 HSPs)
chr3 (7-97)||(49287854-49287940)
chr3 (160-202)||(49288003-49288045)
chr3 (7-45)||(49288509-49288547)


Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 35771142 - 35771052
Alignment:
Q  7 catcataaccatcgtgatttttcttaaattcccaactcttctccaccatctctcatttcaatgtcatatctaatctttcaacttgaaatat 97  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35771142 catcataaccatcgtgatttttcttatattcccaactcttctccaccatctctcatttcaatgtcatatccaatctttcaacttgaaatat 35771052  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 35770989 - 35770947
Alignment:
Q  160 atgtctagattataagtgtgatagttatttcttgccttgaact 202  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  35770989 atgtatagattataagtgtgatagttatttcttgccttgaact 35770947  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 35770459 - 35770493
Alignment:
Q  11 ataaccatcgtgatttttcttaaattcccaactct 45  Q
    |||||||||||||||||||||||||||||||||||    
T  35770459 ataaccatcgtgatttttcttaaattcccaactct 35770493  T

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Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 4386089 - 4385999
Alignment:
Q  7 catcataaccatcgtgatttttcttaaattcccaactcttctccaccatctctcatttcaatgtcatatctaatctttcaacttgaaatat 97  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4386089 catcgtaaccatcgtgatttttcttaaattcccaactcttctccaccatctctcatttcaatgtcatatccaatctttcaacttgaaatat 4385999  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 4385936 - 4385894
Alignment:
Q  160 atgtctagattataagtgtgatagttatttcttgccttgaact 202  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4385936 atgtctagattataagtgtgatagttatttcttgccttgaact 4385894  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 49287854 - 49287940
Alignment:
Q  7 catcataaccatcgtgatttttcttaaattcccaactcttctccaccatctctcatttcaatgtcatatctaatctttcaacttgaaatat 97  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  49287854 catcataaccatcgtgatttttcttaaatttccaactcttctccacca----tcatttcaatgtcatatctaatctttcaacttgaaatat 49287940  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 49288003 - 49288045
Alignment:
Q  160 atgtctagattataagtgtgatagttatttcttgccttgaact 202  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  49288003 atgtctagattataagtgtgatagttatttcttgccttgaact 49288045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 49288547 - 49288509
Alignment:
Q  7 catcataaccatcgtgatttttcttaaattcccaactct 45  Q
    |||||||||||||||||||||||||||||||||||||||    
T  49288547 catcataaccatcgtgatttttcttaaattcccaactct 49288509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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