View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13981_low_1 (Length: 728)
Name: NF13981_low_1
Description: NF13981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13981_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 616; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 1 - 687
Target Start/End: Complemental strand, 7957938 - 7957252
Alignment:
| Q |
1 |
aagttagaatgatcaatactcgattcgacaagatgacaatattatagaatatttcttcatatataagtatcatcacaaacgaaagttaagttgggtttag |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7957938 |
aagttagaatgatcaatactcgattcaacaagatgacaatattacagaatatttcttcatatataagtatcatcacaaacgaaagttaagttgggtttag |
7957839 |
T |
|
| Q |
101 |
aagaagagatcctcacatttattgtctaagagtgtctcaagagcaaaatttgattcttccttaagaaagattctcccatttaatgtttaacaatgtctct |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7957838 |
aagaagagatcctcacatttattgtc-aagagtgtctcaagagcaaaacttgattcttccttaagaaagattctcccatttaatgtttaacaatgtctcg |
7957740 |
T |
|
| Q |
201 |
aactagattacttctagattgagtttggcgactcatccacaagatatagaagggaatgttcttaagagcaagtttagatttttagatggaagtttgatta |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7957739 |
aactagattacttctagattgagtttggtgactcatccacaagatatagaagggaacgttcttaagagcaagtttagatttttagatggaagtttgatta |
7957640 |
T |
|
| Q |
301 |
ctgtgcattaatgccagaaactgcaggaatggatatcaaggtaatactctaaaatcagtatgaatta-aaagaatccaatcattctttcacaaactaact |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
7957639 |
ctgtgcattaatgccagaaactgcaggaatggatatcaaggtaatactctaaaatcagtatgaattacaaaaaatccaatcattctttcacaaactaact |
7957540 |
T |
|
| Q |
400 |
caacaaagttcatatgtaaaagctataacatttcaatttcatgcgagaactcacatcagtagcaaccgcttggcagaatatcaactatactattggaaac |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7957539 |
caacaaagttcatatgtaaaagctataacatttcaatttcatgcgagaactcacatcagtagcaaccgcttggcagaatatcaactatactattggaaac |
7957440 |
T |
|
| Q |
500 |
aggtctgaatgtctgattgttaggctgaattactgaacatagcatcattgattctgtcgataccaacatcagaaatgggatcaatgggcttctcatcctt |
599 |
Q |
| |
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||||| | ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7957439 |
aggtcaggatgtctgattgttagtctgaattacagaacatagcatcattgattctgtcgataccaacatcagaaatgggatcaatgggcttctcatcctt |
7957340 |
T |
|
| Q |
600 |
atcttccaaaaaatcatgactcaaaggatccctactgtactcatctgaagaaagaaatcaatcattaaaatacttgaactcgcagatt |
687 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
7957339 |
atcttccaaaaaatcacgactcaaaggatccctactgtactcatctgaagaaataaatcaatcattaaaacacttgaactcgcagatt |
7957252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 287 - 654
Target Start/End: Complemental strand, 35704048 - 35703672
Alignment:
| Q |
287 |
tggaagtttgattact--gtgcattaatgccagaaactgcaggaatggatatcaa------ggtaatactctaaaatcagtatgaattaaaagaatccaa |
378 |
Q |
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|||||||||||| ||| |||||||||||||||||||| || | ||||||| ||| ||||||||| ||||||| |||||||||||||||||||| |
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| T |
35704048 |
tggaagtttgatcactatgtgcattaatgccagaaactacaaggatggatagcaatagcagggtaatactaaaaaatcactatgaattaaaagaatccaa |
35703949 |
T |
|
| Q |
379 |
-tcattctttcacaa-actaactcaacaaagttcatatgtaaaagctataacatttcaatttcatgcgagaactcacatcagtagcaaccgcttggcaga |
476 |
Q |
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|||||||| ||||| || |||||||| |||||||| | ||||||||||||||| | ||| ||||||||||||||||||| | |||||| |||||| ||| |
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| T |
35703948 |
atcattcttccacaagaccaactcaaccaagttcatgtctaaaagctataacatctaaatctcatgcgagaactcacatccgcagcaactgcttgggaga |
35703849 |
T |
|
| Q |
477 |
atatcaactatactattggaaacaggtctgaatgtctgattgttaggctgaattactgaacatagcatcattgattctgtcgataccaacatcagaaatg |
576 |
Q |
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| T |
35703848 |
atatccaccatactattggaaacaggtccgaa-gtctgattgttaggctgaattattgaacatagcatcattgattctgtcgatgccgatatcagatatg |
35703750 |
T |
|
| Q |
577 |
ggatcaatgggcttctcatccttatcttccaaaaaatcatgactcaaaggatccctactgtactcatctgaagaaaga |
654 |
Q |
| |
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||||||||||||||||||||| ||| || || ||||| | ||||||||||||||||| | ||||||||| ||||| |
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| T |
35703749 |
ggatcaatgggcttctcatccccctctaccgaagaatcaagcgtcaaaggatccctactgaattcatctgaacaaaga |
35703672 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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