View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13981_low_11 (Length: 214)
Name: NF13981_low_11
Description: NF13981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13981_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 42225676 - 42225860
Alignment:
| Q |
16 |
agatgaagcttacactggggacaagaacaagaagcccgagatgatatttcctgaagttatgaaaattgtgaagaaaaagatccataagattctaagaact |
115 |
Q |
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| T |
42225676 |
agatgaagcttacactggggacaagaacaagaagcccgagatgatatttcctgaagttatgaaaattgtgaagaaaaagatccataagattctaagaact |
42225775 |
T |
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| Q |
116 |
aagaatattaagaaattatatatgtatac----atatatacacataaattagtagtgtaacaactagaaagtaagagacttgagt |
196 |
Q |
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| T |
42225776 |
aagaatattaagaaattatatatgtatacatatatatatacacataaattagtagtgtaacaactagcaagtaagagacttgagt |
42225860 |
T |
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