View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13981_low_3 (Length: 473)
Name: NF13981_low_3
Description: NF13981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13981_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 42 - 454
Target Start/End: Complemental strand, 28522374 - 28521968
Alignment:
| Q |
42 |
cttgatgtgtataaaagatgatttacaatttgcattttgctatggaacttatagaaatcctatgtctttcttgtttgaccattattcnnnnnnnnnnnaa |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
28522374 |
cttgatgtgtataaaagatgatttacaatttgcattttgctatggaacttatagaaatcccatgtctttcttgtttgaccattattctttttttttttaa |
28522275 |
T |
|
| Q |
142 |
ttgattcctttttacttactccatttgtcctaccttataaatgtattaggtctccctaaatatatttaaaaacgtgtgaatgatataaaagtacataaat |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28522274 |
ttgattcctttttacttactccatttgtcctaccttatgaatgtattaggtctccctaaatatatttaaaaacgtgtgaatgatataaaagtacataaat |
28522175 |
T |
|
| Q |
242 |
aattaattatgtcaacattcaacacttgtttattccttcaaacaaacaaaaaattgtaaatcacnnnnnnnnatagtcctcctattataattgagtcgac |
341 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||| |||||| |||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
28522174 |
aattaattaggtcaacattcaacacttgtttattcctt----aaaaaaaaaaaatgtaaatcac--ttttttatagtcctcctattataattgtgtcgac |
28522081 |
T |
|
| Q |
342 |
atcaatgtgtgatttatttttaaagtctttctttcaactcttattttcaagtaacttttagatcataaaaaagtcagactaaacggtaccatagtcatgt |
441 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28522080 |
atcaatacgtgctttatttttaaagtctttctttcaacttttattttcaagtaacttttagaccgtaataaagtcagactaaacggtaccatagtcatgt |
28521981 |
T |
|
| Q |
442 |
tttattagccttc |
454 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28521980 |
tttattagccttc |
28521968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University