View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13981_low_5 (Length: 331)
Name: NF13981_low_5
Description: NF13981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13981_low_5 |
 | |
|
| [»] scaffold0114 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 89 - 317
Target Start/End: Original strand, 20064221 - 20064447
Alignment:
| Q |
89 |
aaaagtgaaggttaaataatatataagtgagatgatcaataaacccaaataccttaagattttaaattaaaatgtattatctaactcacttgtatgtttc |
188 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
20064221 |
aaaagtgagggttaaataatatataagtgagatgatcaataaatccaaataccttaagattttaaattaagatatattatctaactcacttgtatgtttc |
20064320 |
T |
|
| Q |
189 |
ctcttaatctaatggtggatgatctttcagactcaccttacatgtcccaacatttaagaaggtaactcctatatcaattttagcattgcagaaattccta |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||| ||||||||||||||||||| ||| |||||||| |
|
|
| T |
20064321 |
ctcttaatctaatggtggatgatctttcagactcac--ttcatgtcccaacatttaagaaggttacttctatatcaattttagcattacaggaattccta |
20064418 |
T |
|
| Q |
289 |
tccaattattggatattaggtagttattg |
317 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
20064419 |
tccaattattggatattaggtggttattg |
20064447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 37660953 - 37660884
Alignment:
| Q |
67 |
ttagaagacccacactgtttgaaaaagtgaaggttaaataatatataagtgagatgatcaataaacccaa |
136 |
Q |
| |
|
||||||| |||| | || ||||||||||||||||| || || |||||||||||| || ||||||| |||| |
|
|
| T |
37660953 |
ttagaagtcccaaattgcttgaaaaagtgaaggttgaacaacatataagtgagaggaccaataaatccaa |
37660884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 42480551 - 42480599
Alignment:
| Q |
84 |
tttgaaaaagtgaaggttaaataatatataagtgagatgatcaataaac |
132 |
Q |
| |
|
|||||||||||| ||||| || ||||| |||||||||||||| |||||| |
|
|
| T |
42480551 |
tttgaaaaagtggaggttgaacaatatgtaagtgagatgatccataaac |
42480599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0114 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 187
Target Start/End: Original strand, 1430 - 1513
Alignment:
| Q |
103 |
aataatatataagtgagatgatcaataaacccaaataccttaagattttaaattaaaatgtattatctaactcacttgtatgttt |
187 |
Q |
| |
|
||||||||||||||||||||| | ||| | || ||||||||| | |||| | | ||||||| ||||| | ||||||||||||||| |
|
|
| T |
1430 |
aataatatataagtgagatgacccatata-cctaataccttagggttttgagtgaaaatgtgttatcgatctcacttgtatgttt |
1513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University