View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13982_high_10 (Length: 521)
Name: NF13982_high_10
Description: NF13982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13982_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 7 - 503
Target Start/End: Original strand, 9466815 - 9467306
Alignment:
| Q |
7 |
cataatcttattgctttattcattcatatatattaatgatttgcaaaaaatatcataactattcttttttaaaatagtaatttatttatcatgaatcatt |
106 |
Q |
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| T |
9466815 |
cataatcttattgctttattcattcatatatattaatgatttgcaaaaaatatcataactattcttttttaaaatagtaatttatttatcatgaatcatt |
9466914 |
T |
|
| Q |
107 |
ttgcatcnnnnnnnn---tcaaatcatttacnnnnnnnnnnnnaaggaaatcattaacttcttaactaattattatggtcagattttgtttttaacacca |
203 |
Q |
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| T |
9466915 |
ttgcataaaaaaaaaaaatcaaatcatttactttttttttt--aaggaaatcattaacttcttaactaattattatggtcagattttgtttttaacacca |
9467012 |
T |
|
| Q |
204 |
taaaggccagaaattttaattctggatgatgatcagaatgggaaaaaatgtatattgatgtgtatcagatatctttacgcataac----tatattcattg |
299 |
Q |
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| T |
9467013 |
taaaggccagaaattttaattctggatgatgatcagaatgggaaaaaatatatattgatgtgtatcagatatctttatgcataactgtatatattcattg |
9467112 |
T |
|
| Q |
300 |
aaccacataaaactataatatgcagcaaaactctctcaaaaaacgtaaacactattgtatttatttttaagattgaatttaaatccaaaacatttagtta |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9467113 |
aaccacataaaactataatatgcagcaaaactctctcaaaaaa------------tgtatttatttttaagattgaatttaaatccaaaacatttagtta |
9467200 |
T |
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| Q |
400 |
aaccggaaaaccttaggccttatcgtcccatccaagtgtgttgagttaagaat-ggtaaattgcaacatgggttggtatttaaaccac-attaatttgtt |
497 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
9467201 |
aaccggaaaaccttaggccttatcgtcccatccaagtgtgttgagttaagaatgggtaaattgcaacatgggttggtatttaaaccacaattagtttgtt |
9467300 |
T |
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