View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13982_high_11 (Length: 497)
Name: NF13982_high_11
Description: NF13982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13982_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 6 - 482
Target Start/End: Original strand, 45973928 - 45974404
Alignment:
| Q |
6 |
tattttaatcagatggttatgtttcgtttaagtgtgtgactgtgttattttattgaatgcagtgaatcacaatccgaattttagttgataagaaagtact |
105 |
Q |
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| T |
45973928 |
tattttaatcagatggttatgtttcgtttaagtgtgtgactgtgttattttattgaatgcagtgaatcacaatccgaattttagttgataagaaagtact |
45974027 |
T |
|
| Q |
106 |
cttgtgttttctttcccaccaccaccaccattggcattgactattttgcaactctccaacccattacaagttaaatcaacagtgcacaatgtcacaagtt |
205 |
Q |
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| T |
45974028 |
cttgtgttttctttcccaccaccaccaccactggcattgactattttgcaactctccaacccattacaagttaaatcaacagtgcacaatgtcacaagtt |
45974127 |
T |
|
| Q |
206 |
cacaaccaaccacattacatcaccatcacattcacgttttctctgtgtttttcagttaccagtacctccattattattagcactatagcatatcacattt |
305 |
Q |
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| T |
45974128 |
cacaaccaaccacattacatcaccatcacattcacgttttctctgtgtttttcagttaccagtacctccattattattagcactatagcatatcacattt |
45974227 |
T |
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| Q |
306 |
cctctttatcggaaaaccatatcccgctttaaacatcgcaactacgcgattatacttatcaatctgtcttctaagtttcttaagagtaaaatacaattca |
405 |
Q |
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| T |
45974228 |
cctctttatcggaaaaccatatcccgctttaaacatcgcaactacgcgattatacttatcaatctgtcttctaagtttcttaagagtaaaatacaattca |
45974327 |
T |
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| Q |
406 |
gcttccaactatatattatgcataataattagttcaagtgctgttatttgattgttgcaataagagatttgcatgcg |
482 |
Q |
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| T |
45974328 |
gcttccaactatatattatgcataataattagttgaagtgctgttatttgattgttgcaataagagatttgcatgcg |
45974404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 10946447 - 10946384
Alignment:
| Q |
13 |
atcagatggttatgtttcgtttaagtgtgtgactgtgttattttattgaatgcagtgaatcaca |
76 |
Q |
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||||||||||| ||| | |||||| |||||||||| || |||||| ||| |||||||||||||| |
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| T |
10946447 |
atcagatggttttgtattgtttaactgtgtgactgcgtcattttaatgactgcagtgaatcaca |
10946384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 29175904 - 29175841
Alignment:
| Q |
13 |
atcagatggttatgtttcgtttaagtgtgtgactgtgttattttattgaatgcagtgaatcaca |
76 |
Q |
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| T |
29175904 |
atcagatggttatgttttgtttgaatgtgtgactgtgtcattttactgactgcagtgagtcaca |
29175841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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