View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13982_high_15 (Length: 360)
Name: NF13982_high_15
Description: NF13982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13982_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 38864596 - 38864381
Alignment:
| Q |
5 |
gagtgagatgaatcaaccatacaccacctatctttaagtaacttcaatggagtatgtagtagtgcagcaaaaatatattcgagacattaaggattcccga |
104 |
Q |
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| T |
38864596 |
gagtgacataaatcaaccatacaccacctatctttaagtaacttcaatggagtatgtagtagtgcagcaaaaatatattcgagacattaaggattcccga |
38864497 |
T |
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| Q |
105 |
tgttcatcaacaatcagcttctaccaatggnnnnnnnnnnngaaggaagcttctaccaatggttattaactatctccattttatttagtaaaaaaggaag |
204 |
Q |
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| T |
38864496 |
tgttcatcaacaatcagcttctaccaatggttttttttttt-aaggaagcttctaccaatggttattaactatctccattttatatagtaaaaaaggaag |
38864398 |
T |
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| Q |
205 |
tttatatatcgaagaag |
221 |
Q |
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||||||||||||||||| |
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| T |
38864397 |
tttatatatcgaagaag |
38864381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 212 - 341
Target Start/End: Complemental strand, 38863427 - 38863298
Alignment:
| Q |
212 |
atcgaagaagtcactctatcacacaagaagactaaaaaatatagagaaatctcatcaccattttaggcactattgtatttcaagttcaaatatcttaaat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38863427 |
atcgaagaagtcactctatcacacaagaagactaaaaaatatagagaaatctcatcaccattttaggcactattgtatttcaagttcaaatatcttaaat |
38863328 |
T |
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| Q |
312 |
gcaagatataaaaaagagagaagtctagga |
341 |
Q |
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| T |
38863327 |
gcaagatataaaaaagagagaagtctagga |
38863298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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