View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13982_high_17 (Length: 334)
Name: NF13982_high_17
Description: NF13982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13982_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 6677723 - 6678019
Alignment:
| Q |
19 |
tttgatactttttaattttcaaagattttgctttcatgttatgacctaacttttagcattaatgagctgaggtttaagctgattaagtgttttttctaag |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6677723 |
tttgatactttttaattttcaaagattttgctttcatgttatgacctaacttttagcattaatgagctgaggtttaagctgattaagtgttttttctaag |
6677822 |
T |
|
| Q |
119 |
tgaaatttgaatagattaaaagatgtatcgtgctgaatggctcataggattgttaacagtaaagtggtttatggttaatcaatactcgatactttaataa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6677823 |
tgaaatttgaatagattaaaagatgtatcgtgctgaatggctcataggattgttaacagtaaagtggtttatggttaatcaatactcgatactttaataa |
6677922 |
T |
|
| Q |
219 |
tgcatttcagattggtatcctttaatttannnnnnnctcgtgttcattgttcactgttcatccaatttctacttaaacatttcttgctcgtccaatttct |
318 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6677923 |
tgcatttcagattggtatcctttaatttatttttttctcg-------tgttcactgttcatccaatttctacttaaacatttcttgctcatccaatttct |
6678015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 3261430 - 3261478
Alignment:
| Q |
183 |
tggtttatggttaatcaatactcgatactttaataatgcatttcagatt |
231 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| ||| |||| ||||| |
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|
| T |
3261430 |
tggtctatggttaatcaatactcgatactttaatgatgtattttagatt |
3261478 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 7e-77; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 36862897 - 36862692
Alignment:
| Q |
22 |
gatactttttaattttcaaagattttgctttcatgttatgacctaacttttagcattaatgagctgaggtttaagctgattaagtgttttttctaagtga |
121 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||| |||||| |||||||||||||| |
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| T |
36862897 |
gatactttttaatgttcaaagatttttctttcatgttatgacctaacttttagcattaatgatctaaggtttaagctggttaagttttttttctaagtga |
36862798 |
T |
|
| Q |
122 |
aatttgaatagattaaaagatgtatcgtgctgaatggctcataggattgttaacagtaaagtggtttatggttaatcaatactcgatactttaataatgc |
221 |
Q |
| |
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||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || |||||||||| | |
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| T |
36862797 |
aatttaaattgattaaaagatgtataatgctgaatggctcataggattgttaacagtaaaatggtctatggttaatcaatactcaatgctttaataatcc |
36862698 |
T |
|
| Q |
222 |
atttca |
227 |
Q |
| |
|
|||||| |
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|
| T |
36862697 |
atttca |
36862692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 36851214 - 36850995
Alignment:
| Q |
19 |
tttgatactttttaattttcaaagattttgctttcatgttatgacctaacttttagcattaatgagctgaggtttaagctgattaagtgttttttctaag |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||| |||||| || |||||||| |
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|
| T |
36851214 |
tttgatactttttaatgttcaaagattttgctttcatgttatgacctaacttctagcattgatgagctaaggtttaagctggttaagt-ttctttctaag |
36851116 |
T |
|
| Q |
119 |
tgaaatttgaatagattaaaagatgtatcgtgctgaatggctcataggattgttaacagtaaagtggtttatggttaatcaatactcgatactttaataa |
218 |
Q |
| |
|
|||||||| ||| |||||||||||||||| ||||||||||||| |||||||||| || |||| |||||||||||||||||| |||||||||||| |
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|
| T |
36851115 |
tgaaatttaaattgattaaaagatgtatcatgctgaatggctcttaggattgtt-------aaatggtctatggttaatcaatactcaatactttaataa |
36851023 |
T |
|
| Q |
219 |
tgcatttcagattggtatcctttaattt |
246 |
Q |
| |
|
||||||||||||| || | ||||||||| |
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|
| T |
36851022 |
tgcatttcagattagtcttctttaattt |
36850995 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 36850984 - 36850940
Alignment:
| Q |
273 |
tgttcatccaatttctacttaaacatttcttgctcgtccaatttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
36850984 |
tgttcatccaatttctacttaaacatttcttgatcatccaatttc |
36850940 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 99
Target Start/End: Complemental strand, 6165211 - 6165177
Alignment:
| Q |
65 |
taacttttagcattaatgagctgaggtttaagctg |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
6165211 |
taacttttagcattaatgagctgaggtttaagctg |
6165177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 36862661 - 36862615
Alignment:
| Q |
273 |
tgttcatccaatttctacttaaacatttcttgctcgtccaatttctg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || |||||||| |
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|
| T |
36862661 |
tgttcatccaatttctacttaaacatttcttgatcatctaatttctg |
36862615 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 46517134 - 46517246
Alignment:
| Q |
19 |
tttgatactttttaattttcaaagattttgctttcatgttatgacctaacttttagcattaatgagctgaggtttaagctgattaagtgttttttctaag |
118 |
Q |
| |
|
|||| ||||||||||| |||||||||||| ||| ||||| ||| | || ||||||||||||| ||| | |||||||| || |||| ||||||||||| |
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| T |
46517134 |
tttgttactttttaatgttcaaagattttcttttgatgttttgatcaaatttttagcattaataagccgcggtttaagttggccaagtcttttttctaag |
46517233 |
T |
|
| Q |
119 |
tgaaatttgaatag |
132 |
Q |
| |
|
|| ||||||||||| |
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|
| T |
46517234 |
tg-aatttgaatag |
46517246 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 18133458 - 18133500
Alignment:
| Q |
183 |
tggtttatggttaatcaatactcgatactttaataatgcattt |
225 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| |||||||| |
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|
| T |
18133458 |
tggtctatggttaatcaatgctcgatactttaatgatgcattt |
18133500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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