View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13982_high_20 (Length: 319)
Name: NF13982_high_20
Description: NF13982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13982_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 34826905 - 34826611
Alignment:
| Q |
18 |
atgtgcatattcaaggtttatctgttctgattaatcgctgttccgctgaataattagacatttgtagggtctaaagcatggatatttgccggttcaattc |
117 |
Q |
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| T |
34826905 |
atgtgcatattcaaggtttatctgttctgattaatcgctgttccgctgaataattagacatttgtagggtctaaagcatggatatttgccggttcaattc |
34826806 |
T |
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| Q |
118 |
ctgtttcttcttgtggttgcgggactggatggttcaatgaaccaaacaatatctcttttaactagggaggctagtgtagtaaaattgtgggtaatgaaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34826805 |
ctgtttcttcttgtggttgcgggactggatggttcaatgaaccaaacaatatctcttttaactagggaggctagtgtagtaaaattgtgggtaatgaaga |
34826706 |
T |
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| Q |
218 |
ttgttctaagatgatttgagttagcttctggtttgaaagtgagattctctaaaagtagactttctagtgtaaatgtcgattcttccttcatctca |
312 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34826705 |
ttgttctaagatgatttgagttagcttctggtttgaacgtgagattctctaaaagtagactttctagtgtaaatgtcgaatcttccttcatctca |
34826611 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 6843087 - 6843144
Alignment:
| Q |
253 |
aaagtgagattctctaaaagtagactttctagtgtaaatgtcgattcttccttcatct |
310 |
Q |
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||||||||||||||||| |||| ||||||| |||||| |||||||||||||| |||| |
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| T |
6843087 |
aaagtgagattctctaagagtatactttctgatgtaaacgtcgattcttcctttatct |
6843144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 9661908 - 9661851
Alignment:
| Q |
253 |
aaagtgagattctctaaaagtagactttctagtgtaaatgtcgattcttccttcatct |
310 |
Q |
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||||||||||||||||| |||| ||||||| || |||| |||||||||||||| |||| |
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| T |
9661908 |
aaagtgagattctctaagagtatactttctggtataaacgtcgattcttcctttatct |
9661851 |
T |
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