View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13982_high_24 (Length: 298)
Name: NF13982_high_24
Description: NF13982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13982_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 42 - 289
Target Start/End: Original strand, 15493830 - 15494077
Alignment:
| Q |
42 |
tacacaaatatctcatttgatacatatcaaaactcgtaaaacaattatttttcattttgaccgttcatattttttatcaacatattaacttatgaattgg |
141 |
Q |
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| T |
15493830 |
tacacaaatatctcctttgatacatatcaaaactcgtaaaacaattatttttcattttgaccattcatatttttgatcaacatattaacttatgaattgg |
15493929 |
T |
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| Q |
142 |
ttattgtcatctgttattagattatgcaactaaacactaaaatgttgcgtttcgaacaagaagaaataatggtggctttgtgtggtatcttggatagtca |
241 |
Q |
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| T |
15493930 |
ttattgtcatctgttattagattatgcaactaaacactaaaatgttgcgtttcgaacaagaagaaataatggtggctttgtgtggtatctttgatagtca |
15494029 |
T |
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| Q |
242 |
tttgaggtaattattgttatgttttcaattactttgtggtatattctt |
289 |
Q |
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| T |
15494030 |
tttgaggtaattattgttatgttttcaattactttgtggtattttctt |
15494077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 232
Target Start/End: Original strand, 7354490 - 7354658
Alignment:
| Q |
65 |
atatcaaaactcgtaaaacaattatttttcattttgaccgttcatattttttatcaacatattaacttatgaattggttattgtcatctgttattagatt |
164 |
Q |
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| T |
7354490 |
atatcaaaacttgtaaaacaatcattttttattttggtacttaataattttgattggcatattaacttatgaattggttgatgttattttttattagatt |
7354589 |
T |
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| Q |
165 |
atgcaactaaacactaaaatgttgcgtttcgaacaagaag-aaataatggtggctttgtgtggtatctt |
232 |
Q |
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| T |
7354590 |
atgcaactaaatgctgaaaggttgcgctttgaacaagaggaaaataatggtgactttgtgtggcatctt |
7354658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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