View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13982_high_4 (Length: 834)
Name: NF13982_high_4
Description: NF13982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13982_high_4 |
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| [»] scaffold2028 (3 HSPs) |
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| [»] scaffold0571 (1 HSPs) |
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Alignment Details
Target: scaffold2028 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: scaffold2028
Description:
Target: scaffold2028; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 137 - 440
Target Start/End: Original strand, 67 - 377
Alignment:
| Q |
137 |
agtctctcgatgttcttaagaaaaaactggaagaggccatgaattcactttagaaataacacttacattttggtctacaatttctctaggtttgtgtaca |
236 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
67 |
agtctctggatgttcttaagaaaaaactggaagaggccatgaattcactttggaaataacacttacattttggtctacaatttctctaggtttgtgtaca |
166 |
T |
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| Q |
237 |
tgttgttaaaggtaaaacagattaagatgtatctgttacttgtatagccagtaactatgtgtaattgatctagcttaacaaatgtaactgagttagttat |
336 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
167 |
tgttgttaaaggtaaaatagat----atgtatctgttacttgtatagcaagtaactatgtgtaattgatctagcttaacaaatgtaactgagttagttat |
262 |
T |
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| Q |
337 |
tcatgttagctagttaaagttagttaagtaactata-----------gttgtgattctacactctatatatagctatagtgatccattgtatcagttaca |
425 |
Q |
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|||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
263 |
tcatgtcagttagttaaagttagttaagtaactatagttgagttagtgttgtgattctacactctatatatagctatagtgatccattgtatcagttaca |
362 |
T |
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| Q |
426 |
ctttccaataataaa |
440 |
Q |
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||||||| ||||||| |
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| T |
363 |
ctttccactaataaa |
377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2028; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 703 - 818
Target Start/End: Original strand, 516 - 626
Alignment:
| Q |
703 |
ttactcacattgatattgcgtccaaagttgtgttgttcaacacggtgtgatgtattttagttttgcacctctacctaaattacatgagtggctctagcaa |
802 |
Q |
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| T |
516 |
ttactcacattgatatcacgtccaaagttg-----ttcaacacggtgtgatgtattttagttttgcacctctacctaaattacatgagtggctctagcaa |
610 |
T |
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| Q |
803 |
gtttgtacaagctttc |
818 |
Q |
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|||||||||||||||| |
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| T |
611 |
gtttgtacaagctttc |
626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2028; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 481 - 526
Target Start/End: Original strand, 469 - 514
Alignment:
| Q |
481 |
cacatgtgttaaatttaaacattttacttaaaactacgagtaatat |
526 |
Q |
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| T |
469 |
cacatgtgttaaatttaaatatttaacttaaaactacgagtaatat |
514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0571 (Bit Score: 173; Significance: 1e-92; HSPs: 1)
Name: scaffold0571
Description:
Target: scaffold0571; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 137 - 342
Target Start/End: Complemental strand, 6340 - 6139
Alignment:
| Q |
137 |
agtctctcgatgttcttaagaaaaaactggaagaggccatgaattcactttagaaataacacttacattttggtctacaatttctctaggtttgtgtaca |
236 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6340 |
agtctctggatgttcttaagaaaaaactggaagaggccatgaattcactttggaaataacacttacattttggtctacaatttctctaggtttgtgtaca |
6241 |
T |
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| Q |
237 |
tgttgttaaaggtaaaacagattaagatgtatctgttacttgtatagccagtaactatgtgtaattgatctagcttaacaaatgtaactgagttagttat |
336 |
Q |
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| T |
6240 |
tgttgttaaaggtaaaatagat----atgtatctgttacttgtatagcaagtaactatgtgtaattgatctagcttaacaaatgtaactgagttagttat |
6145 |
T |
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| Q |
337 |
tcatgt |
342 |
Q |
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|||||| |
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| T |
6144 |
tcatgt |
6139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 7e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 14388772 - 14388545
Alignment:
| Q |
7 |
ttgatccttatcatatggcaggttttgggtgaaaattcaccgattgtgaagcgtcttgagtgtgatcatgccggaaatatttctgcactgtctgtagaaa |
106 |
Q |
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||||||||| | |||||||||||||||||||| |||| ||||||||||| | |||||| |||||||||||||||||||||||||| ||||||| |||| |
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| T |
14388772 |
ttgatcctttccgtatggcaggttttgggtgaagattcgccgattgtgaaatgacttgagcgtgatcatgccggaaatatttctgcattgtctgtggaaa |
14388673 |
T |
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| Q |
107 |
tggaagaaacagaagtttttcacttggcagagtctctcgatgttcttaagaaaaaactggaagaggccatgaattcactttagaaataacacttacattt |
206 |
Q |
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|||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||| ||||||| ||||||||||| ||||||| |||||||| |||||| |
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| T |
14388672 |
tggaagaaacagaagtttttcatttgacagagtctctggatgctcttaagaaaaaattggaagaagccatgaattccctttagatataacactaacattt |
14388573 |
T |
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| Q |
207 |
tggtctacaatttctctaggtttgtgta |
234 |
Q |
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| T |
14388572 |
cggtgtacaatttctctaggtttgtgta |
14388545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 607
Target Start/End: Complemental strand, 14387353 - 14387312
Alignment:
| Q |
566 |
gttaagaaaagttatcaaggcattcaagctatgcctcccttt |
607 |
Q |
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| T |
14387353 |
gttaaggaaagttatataggcattcaagctatgcctcccttt |
14387312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 2e-64; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 240 - 440
Target Start/End: Complemental strand, 12830227 - 12830016
Alignment:
| Q |
240 |
tgttaaaggtaaaacagattaagatgtatctgttacttgtatagccagtaactatgtgtaattgatctagcttaacaaatgtaactgagttagttattca |
339 |
Q |
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||||||||| ||| |||||||||||||| | |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12830227 |
tgttaaaggacaaatagattaagatgtatttcttacgtgtatagcaagtaactatgtgtaattgatctagcttaacaattgtaactgagttagttattca |
12830128 |
T |
|
| Q |
340 |
tgttagctagttaaagttagttaagtaactata-----------gttgtgattctacactctatatatagctatagtgatccattgtatcagttacactt |
428 |
Q |
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||| || |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12830127 |
tgtcagttagttacagttagttaagtaactatagttgagttagagttgtgattctacactctatatatagctatagttatccattgtatcagttacactt |
12830028 |
T |
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| Q |
429 |
tccaataataaa |
440 |
Q |
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|||||||||||| |
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| T |
12830027 |
tccaataataaa |
12830016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 25974014 - 25973946
Alignment:
| Q |
372 |
agttgtgattctacactctatatatagctatagtgatccattgtatcagttacactttccaataataaa |
440 |
Q |
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| T |
25974014 |
agttgtgattctacactctatatatagctatagtaatccattgtatcagttacactttccaataataaa |
25973946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 240 - 317
Target Start/End: Complemental strand, 25974107 - 25974030
Alignment:
| Q |
240 |
tgttaaaggtaaaacagattaagatgtatctgttacttgtatagccagtaactatgtgtaattgatctagcttaacaa |
317 |
Q |
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||||||||| ||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25974107 |
tgttaaaggacaaatagattgagatgtatctgttacttgtatagcaagtaactatgtgtaattgatctagcttaacaa |
25974030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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