View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13982_high_6 (Length: 573)
Name: NF13982_high_6
Description: NF13982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13982_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 3 - 329
Target Start/End: Original strand, 9424266 - 9424592
Alignment:
| Q |
3 |
tgaacgagcagaacctgtgtatggtgacaaagtttccatcatctacaatgatcatgttagattttcttggagagaaacctatgaaagatgtctcaagctt |
102 |
Q |
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| T |
9424266 |
tgaacgagcagccactgtgtatggtgacaaagtttccatcatctacaatgatcatgttagattttcttggagagaaacctatgaaagatgtctcaagctt |
9424365 |
T |
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| Q |
103 |
gcttctgctttggtcaacttaggaatttctaatggtgatattgtaagttcatttatctcccaatctccttatggttatattatactttcctctcaagcta |
202 |
Q |
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| T |
9424366 |
gcttctgctttggtcaacttaggaatttctaatggtgatattgtaagttcatttatctcccaatctccttatggttatattatactttcctctcaagcta |
9424465 |
T |
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| Q |
203 |
actattgtttttgttctctcttcatgaccaaatataatgtaacaatggaatgtaaatcagaaaatatatatgatctattgtttcatgcatcctttgtgac |
302 |
Q |
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| T |
9424466 |
actattgtttttgttctctcttcatgaccaaatataatgtaacaatggaatgtaaatcagaaaatatatatgatctattgtttcatgcatcctttgtgac |
9424565 |
T |
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| Q |
303 |
aaaatataaaagagatctataagtcaa |
329 |
Q |
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| T |
9424566 |
aaaatataaaagagatctataagtcaa |
9424592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 384 - 573
Target Start/End: Original strand, 9424836 - 9425025
Alignment:
| Q |
384 |
gcttatagagttatatagtgtatatttagggtacataggctagagtttggtaattgaattatgtt--tccatcaggcataaattaattaactggttattc |
481 |
Q |
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| T |
9424836 |
gcttatagagt-atatagtgtatatttagggtacataggatagagtttggtaatagaattatattcttccatcaggcagaaattaattaactggttattc |
9424934 |
T |
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| Q |
482 |
taattggtccatacaaactagtggtttatcgactactttaaaatggtctcttgactataataatcaaatttagctaccaatttatcgctaaa |
573 |
Q |
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| T |
9424935 |
taattggtctatacaaactagtggtttatcgactactttaaaatggtctcttgactataataatc-aatttagctaccaatttatcactaaa |
9425025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 321 - 365
Target Start/End: Original strand, 9424765 - 9424809
Alignment:
| Q |
321 |
ataagtcaaatgtttttctctaaattttagactaaatacatttca |
365 |
Q |
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| T |
9424765 |
ataagtcaaatgtttttctctaaattttagactaaatacatttca |
9424809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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