View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13982_high_7 (Length: 558)
Name: NF13982_high_7
Description: NF13982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13982_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 541
Target Start/End: Complemental strand, 41043866 - 41043326
Alignment:
| Q |
1 |
tcacattttaaatatatcctagaaactcaaaaccaaacaaagggatttttcaaatatatttttgtgttaataaatgagtagtagtcgaatttgaatctga |
100 |
Q |
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| T |
41043866 |
tcacattttaaatatatcctagaaactcaaaaccaaacaaagggatttttcaaatatatttttgtgataata-----------------tttgaatctga |
41043784 |
T |
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| Q |
101 |
taaattttaaggaaaaattcaagtctccttnnnnnnnnnn--ggatcaggaaagacatcgaataatggaaagtgatcagagaaaatatta---------- |
188 |
Q |
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| T |
41043783 |
taaattttaaggaaaaattcaagtctccttaaaaaaaaaaaaggatcaggaaagacatcgaataatggaaagtgatcacagaaaatattacagtatgtat |
41043684 |
T |
|
| Q |
189 |
-atggaaagacatggaataagaaaaaatgtgaaaaattaatgttctttgtcatgtgcaaagcctggcacatgtgagaaaaattagttgaagagcatttaa |
287 |
Q |
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| T |
41043683 |
aatggaaagacatggaataagaaaaaatgtgaaaaattaatgttctttgtcatgtgcaaagcctggcacatgtgagaaaaattagttgatgagcatttaa |
41043584 |
T |
|
| Q |
288 |
gtatcagtcnnnnnnntattcttttaagtataattaataggatttgatattttaccnnnnnnnnt---ttaaattaaatttgttactttttgataaccat |
384 |
Q |
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| T |
41043583 |
gtatcagtcaaaaaaatattcttttaagtataattaataggatttgatattttaccaaaaaaaaaaaattaaattaaatttgttactttttgataaccat |
41043484 |
T |
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| Q |
385 |
caaaagaagagggaatgaagaagtgctcaannnnnnnaagtgtatttatatagttgaaggcaggatacatttttcacaaaatatgaagaagatggcacca |
484 |
Q |
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| T |
41043483 |
caaaagaagagggaatgaagaagtgctcaatttttttaagtgtatttatatacttgaaggcaggatacatttttcacaaaatatgaagaagatggcacca |
41043384 |
T |
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| Q |
485 |
ccaatgatgttcca-tttagtattgtatattagttatttttattttggtgtagctata |
541 |
Q |
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| T |
41043383 |
ccaatgatgttccattttagtattgtatattagttatttttattttggtgtagctata |
41043326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 41047103 - 41046992
Alignment:
| Q |
12 |
atatatcctagaaactcaaaaccaaacaaagggatttttcaaatatatttttgtgttaataaatgagtagtagtcgaatttgaatctgat-aaattttaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| | ||||||| |
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| T |
41047103 |
atatatcctagaaactcaaaaccaaacaaagggatttttcaaatatatttttgtgataataaatgaggtgtagttgaatttgaatctgatcacattttaa |
41047004 |
T |
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| Q |
111 |
ggaaaaattcaa |
122 |
Q |
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||| |||||||| |
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| T |
41047003 |
ggataaattcaa |
41046992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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