View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13982_low_10 (Length: 531)

Name: NF13982_low_10
Description: NF13982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13982_low_10
NF13982_low_10
[»] chr1 (18 HSPs)
chr1 (106-349)||(9296214-9296466)
chr1 (387-524)||(9296506-9296643)
chr1 (20-167)||(9301172-9301319)
chr1 (411-520)||(1064937-1065046)
chr1 (235-352)||(31543773-31543888)
chr1 (238-353)||(13467534-13467646)
chr1 (238-353)||(13472528-13472640)
chr1 (238-351)||(19372038-19372150)
chr1 (238-351)||(6200895-6201007)
chr1 (238-351)||(14816972-14817084)
chr1 (238-353)||(31555876-31555988)
chr1 (238-335)||(1065124-1065222)
chr1 (238-351)||(1958699-1958813)
chr1 (238-353)||(2388428-2388540)
chr1 (253-351)||(22430750-22430847)
chr1 (238-345)||(35072414-35072522)
chr1 (238-345)||(2339262-2339370)
chr1 (463-520)||(14816812-14816869)
[»] scaffold1197 (1 HSPs)
scaffold1197 (232-348)||(46-161)
[»] chr6 (21 HSPs)
chr6 (235-353)||(16638005-16638121)
chr6 (238-351)||(16820934-16821047)
chr6 (238-351)||(20456160-20456272)
chr6 (238-353)||(5990231-5990344)
chr6 (238-352)||(18946548-18946661)
chr6 (240-351)||(24146830-24146940)
chr6 (238-351)||(1546107-1546219)
chr6 (242-351)||(27071389-27071497)
chr6 (232-353)||(15649729-15649850)
chr6 (238-351)||(27514190-27514303)
chr6 (252-353)||(28307171-28307268)
chr6 (252-353)||(28355976-28356073)
chr6 (250-351)||(18437706-18437806)
chr6 (238-351)||(18912399-18912511)
chr6 (253-348)||(19716506-19716600)
chr6 (263-351)||(22326783-22326871)
chr6 (238-351)||(619282-619396)
chr6 (258-353)||(16582987-16583080)
chr6 (258-353)||(16612300-16612393)
chr6 (238-353)||(27054988-27055101)
chr6 (253-334)||(20044032-20044112)
[»] chr5 (19 HSPs)
chr5 (235-353)||(24961431-24961547)
chr5 (235-353)||(28847628-28847744)
chr5 (238-351)||(12391355-12391468)
chr5 (240-351)||(1802151-1802261)
chr5 (238-353)||(25529465-25529578)
chr5 (238-335)||(29897505-29897601)
chr5 (238-353)||(11810074-11810186)
chr5 (238-353)||(12177228-12177340)
chr5 (238-353)||(21864078-21864193)
chr5 (238-353)||(26085998-26086110)
chr5 (239-353)||(27230282-27230392)
chr5 (238-352)||(20096779-20096891)
chr5 (253-351)||(21691842-21691939)
chr5 (238-353)||(21992484-21992596)
chr5 (238-351)||(7258092-7258206)
chr5 (239-353)||(20380807-20380917)
chr5 (238-352)||(36451093-36451206)
chr5 (238-353)||(33841578-33841690)
chr5 (238-282)||(37581653-37581697)
[»] chr2 (12 HSPs)
chr2 (235-353)||(35142435-35142551)
chr2 (235-353)||(20614552-20614668)
chr2 (235-353)||(42570766-42570882)
chr2 (242-352)||(20278206-20278315)
chr2 (256-349)||(15949294-15949385)
chr2 (232-351)||(24693250-24693368)
chr2 (274-353)||(24288984-24289061)
chr2 (309-353)||(25498517-25498561)
chr2 (238-353)||(16277299-16277412)
chr2 (239-353)||(30689561-30689671)
chr2 (245-349)||(21116852-21116953)
chr2 (238-353)||(3762686-3762798)
[»] scaffold0002 (1 HSPs)
scaffold0002 (235-353)||(125561-125677)
[»] chr7 (20 HSPs)
chr7 (235-353)||(13835232-13835348)
chr7 (238-351)||(23882719-23882832)
chr7 (238-353)||(4944539-4944652)
chr7 (238-353)||(38413439-38413551)
chr7 (238-351)||(15770072-15770184)
chr7 (238-353)||(565822-565933)
chr7 (238-349)||(34136235-34136345)
chr7 (238-345)||(842588-842695)
chr7 (238-345)||(849764-849871)
chr7 (238-345)||(1207768-1207875)
chr7 (238-352)||(13267875-13267988)
chr7 (238-353)||(3427816-3427931)
chr7 (238-353)||(5205799-5205912)
chr7 (238-353)||(27972934-27973047)
chr7 (238-351)||(42634397-42634511)
chr7 (251-351)||(16269437-16269536)
chr7 (238-351)||(8814468-8814582)
chr7 (270-349)||(16486196-16486273)
chr7 (238-353)||(27437801-27437914)
chr7 (268-351)||(12587710-12587793)
[»] chr4 (15 HSPs)
chr4 (235-353)||(8099348-8099464)
chr4 (238-353)||(14874155-14874268)
chr4 (238-351)||(16365009-16365122)
chr4 (238-351)||(22708181-22708294)
chr4 (238-348)||(3385667-3385776)
chr4 (238-351)||(12512283-12512395)
chr4 (238-350)||(9187688-9187798)
chr4 (238-349)||(14921605-14921715)
chr4 (239-349)||(15570906-15571015)
chr4 (239-349)||(15575034-15575143)
chr4 (253-351)||(16723976-16724073)
chr4 (310-351)||(3832006-3832047)
chr4 (238-306)||(12509309-12509377)
chr4 (238-282)||(15898750-15898794)
chr4 (232-351)||(20557199-20557320)
[»] chr3 (29 HSPs)
chr3 (235-353)||(41002112-41002228)
chr3 (235-353)||(41010894-41011010)
chr3 (238-351)||(8808554-8808667)
chr3 (238-351)||(21611983-21612096)
chr3 (238-351)||(11184203-11184316)
chr3 (238-352)||(30092981-30093093)
chr3 (238-351)||(12476225-12476337)
chr3 (250-351)||(46396627-46396727)
chr3 (238-352)||(23285256-23285369)
chr3 (238-351)||(14421591-14421704)
chr3 (238-353)||(8609027-8609143)
chr3 (250-353)||(3241636-3241737)
chr3 (238-352)||(13108920-13109033)
chr3 (240-351)||(15533255-15533365)
chr3 (238-334)||(70976-71072)
chr3 (239-353)||(26383401-26383516)
chr3 (240-351)||(8620472-8620582)
chr3 (238-345)||(33568697-33568803)
chr3 (238-351)||(6198431-6198544)
chr3 (238-353)||(25267305-25267416)
chr3 (238-353)||(10718923-10719036)
chr3 (250-352)||(14395164-14395265)
chr3 (253-351)||(15623714-15623811)
chr3 (238-352)||(27884281-27884392)
chr3 (238-353)||(3680529-3680644)
chr3 (274-353)||(8201790-8201867)
chr3 (238-353)||(30017098-30017213)
chr3 (244-334)||(14884508-14884597)
chr3 (253-353)||(17929635-17929731)
[»] scaffold0027 (1 HSPs)
scaffold0027 (256-353)||(59705-59800)
[»] scaffold0183 (1 HSPs)
scaffold0183 (238-349)||(32563-32674)
[»] scaffold0004 (1 HSPs)
scaffold0004 (239-351)||(191426-191537)
[»] chr8 (11 HSPs)
chr8 (238-353)||(17679182-17679295)
chr8 (238-353)||(39841833-39841946)
chr8 (253-353)||(6666813-6666915)
chr8 (238-351)||(32003031-32003143)
chr8 (253-348)||(25856446-25856540)
chr8 (238-351)||(21479317-21479431)
chr8 (253-338)||(24703031-24703115)
chr8 (238-351)||(20736965-20737077)
chr8 (238-351)||(20741834-20741946)
chr8 (238-351)||(20745523-20745635)
chr8 (245-351)||(22092589-22092695)
[»] scaffold0357 (1 HSPs)
scaffold0357 (238-351)||(9613-9726)
[»] scaffold0600 (1 HSPs)
scaffold0600 (238-351)||(9258-9370)
[»] scaffold0435 (1 HSPs)
scaffold0435 (238-351)||(11818-11931)
[»] scaffold0582 (1 HSPs)
scaffold0582 (238-351)||(4413-4525)
[»] scaffold0202 (1 HSPs)
scaffold0202 (238-353)||(24458-24572)
[»] scaffold0605 (1 HSPs)
scaffold0605 (252-353)||(4906-5004)
[»] scaffold0327 (1 HSPs)
scaffold0327 (238-353)||(14988-15103)
[»] scaffold0320 (1 HSPs)
scaffold0320 (238-352)||(3471-3584)
[»] scaffold0306 (1 HSPs)
scaffold0306 (238-352)||(18456-18569)
[»] scaffold0155 (1 HSPs)
scaffold0155 (238-349)||(19788-19898)
[»] scaffold0138 (1 HSPs)
scaffold0138 (240-351)||(11410-11520)
[»] scaffold0157 (2 HSPs)
scaffold0157 (238-351)||(8512-8624)
scaffold0157 (238-306)||(11100-11168)
[»] scaffold0031 (1 HSPs)
scaffold0031 (254-353)||(28515-28612)
[»] scaffold0441 (1 HSPs)
scaffold0441 (238-349)||(7218-7329)
[»] scaffold0132 (1 HSPs)
scaffold0132 (238-350)||(32104-32214)
[»] scaffold0019 (1 HSPs)
scaffold0019 (268-351)||(16746-16828)
[»] scaffold0009 (2 HSPs)
scaffold0009 (243-353)||(153017-153126)
scaffold0009 (387-498)||(154344-154448)
[»] scaffold0068 (1 HSPs)
scaffold0068 (253-351)||(21971-22068)
[»] scaffold0001 (1 HSPs)
scaffold0001 (238-348)||(99727-99836)
[»] scaffold0362 (1 HSPs)
scaffold0362 (238-345)||(775-882)
[»] scaffold0114 (1 HSPs)
scaffold0114 (253-348)||(30802-30896)
[»] scaffold0044 (1 HSPs)
scaffold0044 (235-353)||(70744-70859)
[»] scaffold0015 (1 HSPs)
scaffold0015 (238-351)||(165957-166070)
[»] scaffold0029 (1 HSPs)
scaffold0029 (238-349)||(75424-75535)
[»] scaffold0016 (1 HSPs)
scaffold0016 (309-353)||(19535-19579)
[»] scaffold0005 (1 HSPs)
scaffold0005 (232-335)||(302238-302341)
[»] scaffold0243 (1 HSPs)
scaffold0243 (318-351)||(17796-17829)
[»] scaffold0125 (1 HSPs)
scaffold0125 (238-306)||(12496-12565)
[»] scaffold0023 (1 HSPs)
scaffold0023 (238-291)||(142552-142605)
[»] scaffold0014 (1 HSPs)
scaffold0014 (238-306)||(183384-183453)
[»] scaffold0551 (1 HSPs)
scaffold0551 (238-282)||(9357-9401)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 106 - 349
Target Start/End: Original strand, 9296214 - 9296466
Alignment:
Q  106 agacaaagaagctttgattaaagataccgttacaatccgacaatttaataatctaaata---------gtacgttcacaggtgctctaaaaacaatatta 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||| ||| |||| ||||||| |||||||    
T  9296214 agacaaagaagctttgattaaagataccgttacaatccgacaatttaataatctaaataatctaaatagtacgttaacaagtgccctaaaaataatatta 9296313  T
Q  197 ataaaatgggttacgtttcccgtttttcnnnnnnntcattccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccatt 296  Q
    |||||||||||||||||||  |||||||       |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||     
T  9296314 ataaaatgggttacgtttcttgtttttcaaaaaaatcattccgtcccgctcgcgacgaaagtgaatttgtgtagggttttttacttcatgtatttccatc 9296413  T
Q  297 attaataaaatgggtcgttttgatcccgactttatttttattttgtgcttttt 349  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  9296414 attaataaaatgggttgttttgatcccgactttgtttttattttgtgcttttt 9296466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 387 - 524
Target Start/End: Original strand, 9296506 - 9296643
Alignment:
Q  387 gaataatcttgtacaaatgtctagatacaatcattcacttactaaaatcaaacaaaaatcatatatgcagattaaacattgataaacccgtttaacacct 486  Q
    |||||||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9296506 gaataatcttgtccaaatgtctagatacaatcattcagaaactaaaatcaaacaaaaatcatatatgcagattaaacattgataaacccgtttaacacct 9296605  T
Q  487 tacccatgtactttctccaaacattgagttccctatgt 524  Q
    || |||||||||||||||||||||||||||||||||||    
T  9296606 taaccatgtactttctccaaacattgagttccctatgt 9296643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 9301319 - 9301172
Alignment:
Q  20 caagcatttcctcacttaatttcacctaaacatgctctgtaatcattcaccaatgaaagtagcaattatgcatcacttttggtaaaagacaaagaagctt 119  Q
    ||||||||| ||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9301319 caagcattttctcacttaatttcaattaaacatgctttgtaatcattcaccaatgaaagtagcaattatgcatcacatttggtaaaagacaaagaagctt 9301220  T
Q  120 tgattaaagataccgttacaatccgacaatttaataatctaaatagta 167  Q
      ||||||||| |||||||||||||| |||||||||||||||| ||||    
T  9301219 ctattaaagatgccgttacaatccgagaatttaataatctaaaaagta 9301172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 411 - 520
Target Start/End: Complemental strand, 1065046 - 1064937
Alignment:
Q  411 atacaatcattcacttactaaaatcaaacaaaaatcatatatgcagattaaacattgataaacccgtttaacaccttacccatgtactttctccaaacat 510  Q
    |||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||| || || ||| ||||||| |  |||| ||  |    
T  1065046 atacaatcattcacttgctaaaatcaaacattaatcatatatgcagattaaacattgataaacccgttgaaaactttaaccatgtaatccctcccaaatt 1064947  T
Q  511 tgagttccct 520  Q
    ||||||||||    
T  1064946 tgagttccct 1064937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 235 - 352
Target Start/End: Original strand, 31543773 - 31543888
Alignment:
Q  235 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 334  Q
    ||||||||| |||| | | ||||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| || ||||    
T  31543773 ttccgtcccacccgaggcaaaagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgaccttgtttt 31543870  T
Q  335 tattttgtgctttttctg 352  Q
    |||||| |||||||||||    
T  31543871 tattttttgctttttctg 31543888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 13467534 - 13467646
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| | ||||||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| ||  ||||||    
T  13467534 cgtcccacccgaggcgaaagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgacctt-gttttat 13467630  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  13467631 tttgtgctttttctgg 13467646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 13472528 - 13472640
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| | ||||||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| ||  ||||||    
T  13472528 cgtcccacccgaggcgaaagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgacctt-gttttat 13472624  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  13472625 tttgtgctttttctgg 13472640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 19372038 - 19372150
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || ||||||||| |||||||||||||||||||| | | |||  ||| ||||||||||  ||||||||||||||| ||||| |||| ||    
T  19372038 cgtcccgcccgagatgaaagtgaacttgtgtagggctttttgctttaagaattgtcatcattaataaaa-aggtcgttttgatccctactttgttttcat 19372136  T
Q  338 tttgtgctttttct 351  Q
    ||||||||| ||||    
T  19372137 tttgtgcttcttct 19372150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 351
Target Start/End: Complemental strand, 6201007 - 6200895
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||||||||||  ||||| |||||||||||||||  |||| |    
T  6201007 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcattaataaaa-aggtcgctttgatcccgactttgcttttgt 6200909  T
Q  338 tttgtgctttttct 351  Q
    ||||||||||||||    
T  6200908 tttgtgctttttct 6200895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 351
Target Start/End: Complemental strand, 14817084 - 14816972
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || ||||||||| |||||||||| ||||||||| | | |||  ||| ||||||||||  ||||||||||||| ||||||| |||| ||    
T  14817084 cgtcccgcccgagatgaaagtgaacttgtgtagggttttttgctttaagaattgtcatcattaataaaa-aggtcgttttgatctcgactttgttttcat 14816986  T
Q  338 tttgtgctttttct 351  Q
    |||| |||||||||    
T  14816985 tttgcgctttttct 14816972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 31555876 - 31555988
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| | ||| ||||||||||| ||||| ||||||||| |||||||| ||| |||| | |||  |||||| ||||||||||||||  ||||||    
T  31555876 cgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatgtattttcatcattagtgaaa--ggtcgtcttgatcccgacttt-gttttat 31555972  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  31555973 tttgtgctttttctgg 31555988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 1065222 - 1065124
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggcttttt-gcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttattttt 335  Q
    ||||||||||| ||||||||| || ||||||| || ||||| ||||||||||||||||| || |||||||   ||| |||||||||||||||| |||||    
T  1065222 cgtcccgcccgagacgaaagtaaacttgtgtatggtttttttgcttcatgtatttccatcatcaataaaaaaagtctttttgatcccgactttgttttt 1065124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 1958699 - 1958813
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtattt-ccattattaataaaatgggtcgttttgatcccgactttattttta 336  Q
    ||||||| ||| || |||||  || |||| |||||| |||||||||| | |||| |||| ||||||||||   |||||||||||||||||||| |||| |    
T  1958699 cgtcccgtccgagatgaaagcaaacttgtttagggcattttgcttcaagcattttccatcattaataaaaatagtcgttttgatcccgactttgttttca 1958798  T
Q  337 ttttgtgctttttct 351  Q
    |||||||||||||||    
T  1958799 ttttgtgctttttct 1958813  T

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Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 2388428 - 2388540
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| |  |||||||| ||  ||||||    
T  2388428 cgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtctcaatcccgacctt-gttttat 2388524  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  2388525 tttgtgctttttctgg 2388540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 253 - 351
Target Start/End: Original strand, 22430750 - 22430847
Alignment:
Q  253 gaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttct 351  Q
    ||||||||| | ||||||| |||||||||| | | |||  |||||||||||||| || ||||||||||||||  ||| |||||||||||||||| ||||    
T  22430750 gaaagtgaactggtgtaggactttttgctttaagaattgtcattattaataaaaagg-tcgttttgatcccgtttttgtttttattttgtgcttcttct 22430847  T

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Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 345
Target Start/End: Original strand, 35072414 - 35072522
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatg-ggtcgttttgatcccgactttattttta 336  Q
    ||||||||||  |||||||||||| || ||||||||| ||||||||||| |||  ||| |||||||||| |  ||||| ||||||||||| ||  |||||    
T  35072414 cgtcccgcccaagacgaaagtgaacttatgtagggctctttgcttcatgaattgtcatcattaataaaaagaagtcgtcttgatcccgaccttgctttta 35072513  T
Q  337 ttttgtgct 345  Q
    |||| ||||    
T  35072514 ttttatgct 35072522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 345
Target Start/End: Complemental strand, 2339370 - 2339262
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaat-aaaatgggtcgttttgatcccgactttattttta 336  Q
    ||||||||||  |||||||||||| || ||||||||| ||||||||||| |||   || |||||| ||||  |||||| ||||||||||| ||  |||||    
T  2339370 cgtcccgcccaagacgaaagtgaacttatgtagggctctttgcttcatgaattgttatcattaataaaaaaaggtcgtcttgatcccgaccttgctttta 2339271  T
Q  337 ttttgtgct 345  Q
    |||| ||||    
T  2339270 ttttatgct 2339262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 14816869 - 14816812
Alignment:
Q  463 cattgataaacccgtttaacaccttacccatgtactttctccaaacattgagttccct 520  Q
    |||| ||||||||||| ||||| ||| ||||||||| ||||| ||| |||||||||||    
T  14816869 cattaataaacccgttgaacacattaaccatgtactctctcccaactttgagttccct 14816812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1197 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold1197
Description:

Target: scaffold1197; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 232 - 348
Target Start/End: Original strand, 46 - 161
Alignment:
Q  232 tcattccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttat 331  Q
    ||||| ||||||||||| || ||||||||| | |||||||||||||||||||||| |||  ||| ||||||||||  ||||||||||||||||||||| |    
T  46 tcatttcgtcccgcccgagatgaaagtgaactggtgtagggctttttgcttcatgcattgtcatcattaataaaa-aggtcgttttgatcccgactttgt 144  T
Q  332 ttttattttgtgctttt 348  Q
    ||| |||||||||||||    
T  145 tttcattttgtgctttt 161  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 353
Target Start/End: Original strand, 16638005 - 16638121
Alignment:
Q  235 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 334  Q
    ||||||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| |||||||    
T  16638005 ttccgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgaccttatttt 16638102  T
Q  335 tattttgtgctttttctgg 353  Q
    |||||||||||| ||||||    
T  16638103 tattttgtgcttattctgg 16638121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 238 - 351
Target Start/End: Complemental strand, 16821047 - 16820934
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||| ||||||  |||||||||||||||||||||  ||||||    
T  16821047 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcatttataaaaaaggtcgttttgatcccgactttgcttttat 16820948  T
Q  338 tttgtgctttttct 351  Q
    ||||||||||||||    
T  16820947 tttgtgctttttct 16820934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 351
Target Start/End: Complemental strand, 20456272 - 20456160
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || ||||||||| |||||||||||||||||||| | | |||  ||| ||||||||||  |||| |||||||||||||||| |||| ||    
T  20456272 cgtcccgcccgagatgaaagtgaacttgtgtagggctttttgctttaagaattatcatcattaataaaa-aggtcattttgatcccgactttgttttcat 20456174  T
Q  338 tttgtgctttttct 351  Q
    ||||||||| ||||    
T  20456173 tttgtgcttcttct 20456160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 5990231 - 5990344
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||  |||||| |||| || |||||||    
T  5990231 cgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgccttgatctcgaccttgtttttat 5990328  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  5990329 tttgtgctttttctgg 5990344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 238 - 352
Target Start/End: Complemental strand, 18946661 - 18946548
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatt-tccattattaataaaatgggtcgttttgatcccgactttattttta 336  Q
    ||||||||||| || ||||||||  |||||||||||||||||||| | |||||   ||| ||||||||||  ||||||||||| |||||||||| |||||    
T  18946661 cgtcccgcccgagatgaaagtgatcttgtgtagggctttttgctttaagtattggtcatcattaataaaa-aggtcgttttgagcccgacttta-tttta 18946564  T
Q  337 ttttgtgctttttctg 352  Q
    ||||||||||||||||    
T  18946563 ttttgtgctttttctg 18946548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 351
Target Start/End: Complemental strand, 24146940 - 24146830
Alignment:
Q  240 tcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattt 339  Q
    ||||||||  || ||||||||| | |||||||||||||||||| | |  ||  ||| |||||||||| || |||||||||||||||||||||||| ||||    
T  24146940 tcccgcccaggatgaaagtgaactagtgtagggctttttgctttaagatttgtcatcattaataaaaagg-tcgttttgatcccgactttattttcattt 24146842  T
Q  340 tgtgctttttct 351  Q
    ||||||||||||    
T  24146841 tgtgctttttct 24146830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 1546107 - 1546219
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| ||  |||||||| | | |||||||||||||||| | | |||  ||| |||||||||| || ||||||||||||| |||||||||||||    
T  1546107 cgtcccgcccgagataaaagtgaactggggtagggctttttgctttaagaattgtcatcattaataaaaagg-tcgttttgatcccaactttatttttat 1546205  T
Q  338 tttgtgctttttct 351  Q
    ||||||||| ||||    
T  1546206 tttgtgcttcttct 1546219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 242 - 351
Target Start/End: Complemental strand, 27071497 - 27071389
Alignment:
Q  242 ccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttg 341  Q
    ||||||| |||||||||||| |||||||||||||||||||| | | |||  ||| ||||||||||   |||||||||||||||||||| |||| | ||||    
T  27071497 ccgcccgagacgaaagtgaacttgtgtagggctttttgctttaagaattgtcatcattaataaaa-aagtcgttttgatcccgactttgttttcactttg 27071399  T
Q  342 tgctttttct 351  Q
    ||||| ||||    
T  27071398 tgcttcttct 27071389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 232 - 353
Target Start/End: Complemental strand, 15649850 - 15649729
Alignment:
Q  232 tcattccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgg-gtcgttttgatcccgacttta 330  Q
    ||||| |||||| | || |||||||||||| |||| |||| |||||||||| ||| |||||||| ||||||||||    ||||||||||||||||||||     
T  15649850 tcatttcgtcccacgcgagacgaaagtgaacttgtttaggactttttgctttatgcatttccatcattaataaaaaaaagtcgttttgatcccgacttt- 15649752  T
Q  331 tttttattttgtgctttttctgg 353  Q
     ||||| ||||| ||||||||||    
T  15649751 gttttactttgtactttttctgg 15649729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 27514190 - 27514303
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgttttgatcccgactttattttta 336  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | | ||  | | |||||||||| || |||||||||||||||||||  |||||    
T  27514190 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaaattgtcctcattaataaaaagg-tcgttttgatcccgactttgctttta 27514288  T
Q  337 ttttgtgctttttct 351  Q
    |||||||||||||||    
T  27514289 ttttgtgctttttct 27514303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 353
Target Start/End: Original strand, 28307171 - 28307268
Alignment:
Q  252 cgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttct 351  Q
    ||||||||||||||| ||||||||||||||| |||||||| ||| |||| | |||  |||||  ||||||||||||||  ||||||||||||||||||||    
T  28307171 cgaaagtgaatttgtttagggctttttgctttatgtattttcatcattagtgaaa--ggtcg-cttgatcccgacttt-gttttattttgtgctttttct 28307266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 353
Target Start/End: Original strand, 28355976 - 28356073
Alignment:
Q  252 cgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttct 351  Q
    ||||||||||||||| ||||||||||||||| |||||||| ||| |||| | |||  |||||  ||||||||||||||  ||||||||||||||||||||    
T  28355976 cgaaagtgaatttgtttagggctttttgctttatgtattttcatcattagtgaaa--ggtcg-cttgatcccgacttt-gttttattttgtgctttttct 28356071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 351
Target Start/End: Original strand, 18437706 - 18437806
Alignment:
Q  250 gacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgcttttt 349  Q
    |||||||||||| || ||||||||||||||||| | | |||   || |||||||||| || ||||||||||||||||||| |||| ||||||||||| ||    
T  18437706 gacgaaagtgaacttatgtagggctttttgctttaagcattgttatcattaataaaaagg-tcgttttgatcccgactttgttttcattttgtgcttctt 18437804  T
Q  350 ct 351  Q
    ||    
T  18437805 ct 18437806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 18912399 - 18912511
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||  ||| |||||||| || ||||||||| ||||||||||| |||  ||| ||||||||| |   |||||||||||||||||||  ||||||    
T  18912399 cgtcccgcccaagacaaaagtgaacttatgtagggctctttgcttcatgaattgtcatcattaataaa-tatatcgttttgatcccgactttgattttat 18912497  T
Q  338 tttgtgctttttct 351  Q
    ||| ||||||||||    
T  18912498 tttatgctttttct 18912511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 348
Target Start/End: Original strand, 19716506 - 19716600
Alignment:
Q  253 gaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttt 348  Q
    ||||||||| | |||||||||||||||||| | | |||  ||| |||||||||| || ||||||||||||||||||  |||| |||||||||||||    
T  19716506 gaaagtgaactggtgtagggctttttgctttaagaattgtcatcattaataaaaagg-tcgttttgatcccgacttggttttcattttgtgctttt 19716600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 351
Target Start/End: Original strand, 22326783 - 22326871
Alignment:
Q  263 ttgtgtagggctttttgcttcatgtattt-ccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttct 351  Q
    |||| |||||| |||||||||| | |||| |||| ||||||||||  | ||||||||||||||||||| |||| ||||||||||||||||    
T  22326783 ttgtttagggcattttgcttcaagcattttccatcattaataaaaaag-tcgttttgatcccgactttgttttcattttgtgctttttct 22326871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 351
Target Start/End: Complemental strand, 619396 - 619282
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgtttt-gatcccgactttattttt 335  Q
    ||||||||||| || ||||||||| | |||||||||||||| ||| | | | ||  ||| |||||||||| || ||||||| ||||||||||||  ||||    
T  619396 cgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaagg-tcgtttttgatcccgactttgctttt 619298  T
Q  336 attttgtgctttttct 351  Q
    ||||||||||||||||    
T  619297 attttgtgctttttct 619282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 258 - 353
Target Start/End: Original strand, 16582987 - 16583080
Alignment:
Q  258 tgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttctgg 353  Q
    ||||||||| ||| ||||||||||| |||||||| ||| |||||| |||| |||||| | | ||||||| ||  ||||||||||||||||||||||    
T  16582987 tgaatttgtttagagctttttgctttatgtattttcatcattaatgaaat-ggtcgtctcggtcccgacctt-gttttattttgtgctttttctgg 16583080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 258 - 353
Target Start/End: Complemental strand, 16612393 - 16612300
Alignment:
Q  258 tgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttctgg 353  Q
    ||||||||| ||| ||||||||||| |||||||| ||| |||||| |||| |||||| | | ||||||| ||  ||||||||||||||||||||||    
T  16612393 tgaatttgtttagagctttttgctttatgtattttcatcattaatgaaat-ggtcgtctcggtcccgacctt-gttttattttgtgctttttctgg 16612300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 27055101 - 27054988
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| |||| ||||||| |||| ||||||||||||||  || ||||| ||| |||||| |||  |||||| ||| ||||||| ||  ||||||    
T  27055101 cgtcccacccgagacggaagtgaacttgtttagggctttttgctgtatctattttcatcattaatgaaa-aggtcgtcttggtcccgacctt-cttttat 27055004  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  27055003 tttgtgctttttctgg 27054988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 334
Target Start/End: Complemental strand, 20044112 - 20044032
Alignment:
Q  253 gaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 334  Q
    ||||||||| | ||||||||||||||| || | |  ||  ||| |||||||||| || ||||||||||||||||||||||||    
T  20044112 gaaagtgaactagtgtagggctttttgttttaagatttgtcatcattaataaaaagg-tcgttttgatcccgactttatttt 20044032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 353
Target Start/End: Complemental strand, 24961547 - 24961431
Alignment:
Q  235 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 334  Q
    ||||||||| |||| | ||||||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| || ||||    
T  24961547 ttccgtcccacccgaggcgaaagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgaccttgtttt 24961450  T
Q  335 tattttgtgctttttctgg 353  Q
    |||||| ||||||||||||    
T  24961449 tattttttgctttttctgg 24961431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 235 - 353
Target Start/End: Original strand, 28847628 - 28847744
Alignment:
Q  235 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 334  Q
    ||||||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| |  ||||    
T  28847628 ttccgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgacctcgtttt 28847725  T
Q  335 tattttgtgctttttctgg 353  Q
    |||||||||||||||||||    
T  28847726 tattttgtgctttttctgg 28847744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 238 - 351
Target Start/End: Complemental strand, 12391468 - 12391355
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||| ||||||  |||||||||||||||||||||  ||||||    
T  12391468 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcatttataaaaaaggtcgttttgatcccgactttgcttttat 12391369  T
Q  338 tttgtgctttttct 351  Q
    ||||||||||||||    
T  12391368 tttgtgctttttct 12391355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 351
Target Start/End: Original strand, 1802151 - 1802261
Alignment:
Q  240 tcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattt 339  Q
    ||||||||  || ||||||||| | |||||||||||||||||| | |  ||  ||| |||||||||| || |||||||||||||||||||||||| ||||    
T  1802151 tcccgcccaggatgaaagtgaactagtgtagggctttttgctttaagatttgtcatcattaataaaaagg-tcgttttgatcccgactttattttcattt 1802249  T
Q  340 tgtgctttttct 351  Q
    ||||||||||||    
T  1802250 tgtgctttttct 1802261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 25529465 - 25529578
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||| ||||| || | ||||||| |||||||||||||||||||| | | |||  ||| ||||||||||  |||||||||||||||||||||  ||||||    
T  25529465 cgtcctgcccgagatgtaagtgaacttgtgtagggctttttgctttaagaattgtcatcattaataaaa-aggtcgttttgatcccgacttt-gttttat 25529562  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  25529563 tttgtgctttttctgg 25529578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 335
Target Start/End: Original strand, 29897505 - 29897601
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttattttt 335  Q
    ||||||||||  |||||||||||| || ||||||||||||||||||||| | |  ||| ||||||||||  ||||||||||||||||||||| |||||    
T  29897505 cgtcccgcccaagacgaaagtgaacttatgtagggctttttgcttcatgaactgtcatcattaataaaa-aggtcgttttgatcccgactttgttttt 29897601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 11810186 - 11810074
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| | ||| ||||||||||| ||||| ||||||||| |||||||| ||| |||| | |||  |||||| ||||||||||||||  ||||||    
T  11810186 cgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatgtattttcatcattagtgaaa--ggtcgtcttgatcccgacttt-gttttat 11810090  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  11810089 tttgtgctttttctgg 11810074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 12177340 - 12177228
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| | ||| ||||||||||| ||||| ||||||||| |||||||| ||| |||| | |||  |||||| ||||||||||||||  ||||||    
T  12177340 cgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatgtattttcatcattagtgaaa--ggtcgtcttgatcccgacttt-gttttat 12177244  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  12177243 tttgtgctttttctgg 12177228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 21864193 - 21864078
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggcttttt-gcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttattttta 336  Q
    |||||| |||| |||| |||||||||||| ||||||||||| |||| |||||||| ||| |||||| |||  | ||| |||| | |||||||| ||||||    
T  21864193 cgtcccacccgagacggaagtgaatttgtttagggcttttttgctttatgtattttcatcattaattaaaaag-tcgctttgtttccgactttgttttta 21864095  T
Q  337 ttttgtgctttttctgg 353  Q
    |||||||||||||||||    
T  21864094 ttttgtgctttttctgg 21864078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 26086110 - 26085998
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| | ||| ||||||||||| ||||| ||||||||| |||||||| ||| |||| | |||  |||||| ||||||||||||||  ||||||    
T  26086110 cgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatgtattttcatcattagtgaaa--ggtcgtcttgatcccgacttt-gttttat 26086014  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  26086013 tttgtgctttttctgg 26085998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 239 - 353
Target Start/End: Complemental strand, 27230392 - 27230282
Alignment:
Q  239 gtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttatt 338  Q
    ||||| |||| ||||||||||||||  | ||||||||||||||| |||||||| ||| |||||| |||  |||||  ||||||||||||||  |||||||    
T  27230392 gtcccccccgagacgaaagtgaattcatctagggctttttgctttatgtattttcatcattaatgaaa--ggtcg-cttgatcccgacttt-gttttatt 27230297  T
Q  339 ttgtgctttttctgg 353  Q
    |||||||||||||||    
T  27230296 ttgtgctttttctgg 27230282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 352
Target Start/End: Complemental strand, 20096891 - 20096779
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgttttgatcccgactttattttta 336  Q
    ||||||||||| || ||||||||  |||||||||||||||| ||| | |||||   ||| ||||| |||| || |||||||||||||||||||| |||||    
T  20096891 cgtcccgcccgagatgaaagtgatcttgtgtagggcttttt-ctttaagtattggtcatcattaacaaaaagg-tcgttttgatcccgacttta-tttta 20096795  T
Q  337 ttttgtgctttttctg 352  Q
    ||||||||||||||||    
T  20096794 ttttgtgctttttctg 20096779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 253 - 351
Target Start/End: Original strand, 21691842 - 21691939
Alignment:
Q  253 gaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttct 351  Q
    ||||||||| | |||||||||||||||||| | | |||  ||| |||||||||| || ||||||||||||||||||| |||| | ||||||||| ||||    
T  21691842 gaaagtgaactggtgtagggctttttgcttaaagaattgtcatcattaataaaaagg-tcgttttgatcccgactttgttttcactttgtgcttcttct 21691939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 21992596 - 21992484
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| | ||| ||||||||||| ||||| ||||||||| |||||||| ||| |||| | |||  |||||| | ||||||||| ||  ||||||    
T  21992596 cgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatgtattttcatcattagtgaaa--ggtcgtctcgatcccgacctt-gttttat 21992500  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  21992499 tttgtgctttttctgg 21992484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 351
Target Start/End: Complemental strand, 7258206 - 7258092
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgtttt-gatcccgactttattttt 335  Q
    ||||||||||| || ||||||||| | |||||||||||||| ||| | | | ||  ||| |||||||||| || ||||||| ||||||||||||  ||||    
T  7258206 cgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaagg-tcgtttttgatcccgactttgctttt 7258108  T
Q  336 attttgtgctttttct 351  Q
    ||||||||||||||||    
T  7258107 attttgtgctttttct 7258092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 353
Target Start/End: Original strand, 20380807 - 20380917
Alignment:
Q  239 gtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttatt 338  Q
    ||||| |||| || |||||||||||  | ||||||||||||||| |||||||| ||| |||| | |||  |||||  ||||||||||||||  |||||||    
T  20380807 gtcccacccgagatgaaagtgaattcatctagggctttttgctttatgtattttcatcattagtgaaa--ggtcg-cttgatcccgacttt-gttttatt 20380902  T
Q  339 ttgtgctttttctgg 353  Q
    |||||||||||||||    
T  20380903 ttgtgctttttctgg 20380917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 352
Target Start/End: Original strand, 36451093 - 36451206
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgttttgatcccgactttattttta 336  Q
    ||||||||| | || |||| |||  |||||||||||||||||||| | |||||   |||  ||||||||| || ||||||| |||||||||||| |||||    
T  36451093 cgtcccgcctgagatgaaattgatcttgtgtagggctttttgctttaagtattggtcatctttaataaaaagg-tcgttttaatcccgacttta-tttta 36451190  T
Q  337 ttttgtgctttttctg 352  Q
    ||||||||||||||||    
T  36451191 ttttgtgctttttctg 36451206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 33841690 - 33841578
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| |||| || |||| |||| |||||||||||||||   |||||| ||| |||||| ||| || ||| || |||||||||||| |||| ||    
T  33841690 cgtcccacccgagacggaattgaacttgtttagggctttttgcttttcgtattttcatcattaatgaaaagg-tcgctt-gatcccgactttgtttt-at 33841594  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  33841593 tttgtgctttttctgg 33841578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 37581653 - 37581697
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgctt 282  Q
    ||||||||||| || ||||||||| | ||||||||||||||||||    
T  37581653 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctt 37581697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 353
Target Start/End: Original strand, 35142435 - 35142551
Alignment:
Q  235 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 334  Q
    ||||||||| |||| | ||||||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| || ||||    
T  35142435 ttccgtcccacccgaggcgaaagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgaccttgtttt 35142532  T
Q  335 tattttgtgctttttctgg 353  Q
    |||||| ||||||||||||    
T  35142533 tattttttgctttttctgg 35142551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 235 - 353
Target Start/End: Original strand, 20614552 - 20614668
Alignment:
Q  235 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 334  Q
    ||||||||| | || | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| || ||||    
T  20614552 ttccgtcccactcgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgaccttgtttt 20614649  T
Q  335 tattttgtgctttttctgg 353  Q
    |||||||||||||||||||    
T  20614650 tattttgtgctttttctgg 20614668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 235 - 353
Target Start/End: Complemental strand, 42570882 - 42570766
Alignment:
Q  235 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 334  Q
    ||||||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| |  ||||    
T  42570882 ttccgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgacctcgtttt 42570785  T
Q  335 tattttgtgctttttctgg 353  Q
    |||||||||||||||||||    
T  42570784 tattttgtgctttttctgg 42570766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 20278315 - 20278206
Alignment:
Q  242 ccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtattt-ccattattaataaaatgggtcgttttgatcccgactttatttttatttt 340  Q
    ||||||| || ||||||||  |||||||||||||||||||| | |||||  |||| |||||||||| || |||||||||||||||||||| |||||||||    
T  20278315 ccgcccgagatgaaagtgatcttgtgtagggctttttgctttaagtattggccatcattaataaaaagg-tcgttttgatcccgacttta-ttttatttt 20278218  T
Q  341 gtgctttttctg 352  Q
    ||||||||||||    
T  20278217 gtgctttttctg 20278206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 256 - 349
Target Start/End: Complemental strand, 15949385 - 15949294
Alignment:
Q  256 agtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgcttttt 349  Q
    ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| || |||||||||||||||||||    
T  15949385 agtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgaccttgtttttattttgtgcttttt 15949294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 232 - 351
Target Start/End: Original strand, 24693250 - 24693368
Alignment:
Q  232 tcattccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttat 331  Q
    ||||| ||||||||||| |||||||||| | || |||||||||| |||||| | ||||   ||| ||||||||||  |||||||| |||||||||||| |    
T  24693250 tcatttcgtcccgcccgagacgaaagtggacttatgtagggcttcttgctttaagtatggtcatcattaataaaa-aggtcgtttcgatcccgactttgt 24693348  T
Q  332 ttttattttgtgctttttct 351  Q
    ||| ||||||||||| ||||    
T  24693349 tttcattttgtgcttcttct 24693368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 353
Target Start/End: Original strand, 24288984 - 24289061
Alignment:
Q  274 tttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttctgg 353  Q
    ||||||||| |||||||| ||| |||||| |||  |||||| | |||||||||||| |||||||||||||||||||||||    
T  24288984 tttttgctttatgtattttcatcattaatgaaa--ggtcgtctcgatcccgactttgtttttattttgtgctttttctgg 24289061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 25498517 - 25498561
Alignment:
Q  309 ggtcgttttgatcccgactttatttttattttgtgctttttctgg 353  Q
    |||||||||||||||||| || |||||||||||||||||||||||    
T  25498517 ggtcgttttgatcccgaccttgtttttattttgtgctttttctgg 25498561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 16277299 - 16277412
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| |||| ||||||| |||| ||||||||||||||  || ||||| ||| |||||| |||  |||||| ||| ||||||| ||  ||||||    
T  16277299 cgtcccacccgagacggaagtgaacttgtttagggctttttgctgtatctattttcatcattaatgaaa-aggtcgtcttggtcccgacctt-cttttat 16277396  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  16277397 tttgtgctttttctgg 16277412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 353
Target Start/End: Complemental strand, 30689671 - 30689561
Alignment:
Q  239 gtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttatt 338  Q
    ||||| |||| || |||||||||||  | ||||||||||||||| |||||||| ||| |||| | |||  |||||  ||||||||||||||  |||||||    
T  30689671 gtcccacccgagatgaaagtgaattcatctagggctttttgctttatgtattttcatcattagtgaaa--ggtcg-cttgatcccgacttt-gttttatt 30689576  T
Q  339 ttgtgctttttctgg 353  Q
    |||||||||||||||    
T  30689575 ttgtgctttttctgg 30689561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 245 - 349
Target Start/End: Original strand, 21116852 - 21116953
Alignment:
Q  245 cccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgc 344  Q
    |||| |||| ||||||||||||  |||||||||||||| |||||||  ||| |||||| |||  |||||| | ||||||||| ||  |||||||||||||    
T  21116852 cccgagacggaagtgaatttgttcagggctttttgctttatgtattctcatcattaatgaaa--ggtcgtctcgatcccgacctt-gttttattttgtgc 21116948  T
Q  345 ttttt 349  Q
    |||||    
T  21116949 ttttt 21116953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 3762798 - 3762686
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| |||| ||||||  |||| |||||||||||||||   |||||| ||| |||||| ||| || ||| || |||||||||||| |||| ||    
T  3762798 cgtcccacccgagacggaagtgagcttgtttagggctttttgcttttcgtattttcatcattaatgaaaagg-tcgctt-gatcccgactttgtttt-at 3762702  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  3762701 tttgtgctttttctgg 3762686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 235 - 353
Target Start/End: Original strand, 125561 - 125677
Alignment:
Q  235 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 334  Q
    ||||||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||  ||||||||||| || ||||    
T  125561 ttccgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgacttgatcccgaccttgtttt 125658  T
Q  335 tattttgtgctttttctgg 353  Q
    |||||||||||||||||||    
T  125659 tattttgtgctttttctgg 125677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 235 - 353
Target Start/End: Original strand, 13835232 - 13835348
Alignment:
Q  235 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 334  Q
    ||||||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| | ||||||||| || ||||    
T  13835232 ttccgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtctcgatcccgaccttgtttt 13835329  T
Q  335 tattttgtgctttttctgg 353  Q
    |||||||||||||||||||    
T  13835330 tattttgtgctttttctgg 13835348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 238 - 351
Target Start/End: Complemental strand, 23882832 - 23882719
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||| ||||||  |||||||||||||||||||||  ||||||    
T  23882832 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcatttataaaaaaggtcgttttgatcccgactttgcttttat 23882733  T
Q  338 tttgtgctttttct 351  Q
    ||||||||||||||    
T  23882732 tttgtgctttttct 23882719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 4944652 - 4944539
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| | |||||||||||| ||| |||    
T  4944652 cgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtctcgatcccgactttgtttctat 4944555  T
Q  338 tttgtgctttttctgg 353  Q
    ||||| ||||||||||    
T  4944554 tttgtactttttctgg 4944539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 38413439 - 38413551
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| | ||||||||||||||| |||||||||||||||||||||||| ||| |||||| |||  |||||| | |||||||||  || ||||||    
T  38413439 cgtcccacccgaggcgaaagtgaatttgtttagggctttttgcttcatgtattttcatcattaatgaaa--ggtcgtctcgatcccgac-ctagttttat 38413535  T
Q  338 tttgtgctttttctgg 353  Q
    |||||||||| |||||    
T  38413536 tttgtgctttgtctgg 38413551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 351
Target Start/End: Complemental strand, 15770184 - 15770072
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| ||  |||||||| | | |||||||||||||||| | | |||  ||| |||||||||| || ||||||||||||| |||||||||||||    
T  15770184 cgtcccgcccgagataaaagtgaactggggtagggctttttgctttaagaattgtcatcattaataaaaagg-tcgttttgatcccaactttatttttat 15770086  T
Q  338 tttgtgctttttct 351  Q
    ||||||||| ||||    
T  15770085 tttgtgcttcttct 15770072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 565933 - 565822
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| | ||| ||||||||||| ||||| ||||||||| |||||||| ||| |||| | |||  |||||| |||||||||||||| |||| ||    
T  565933 cgtcccacccgaggcgagagtgaatttgtttagggatttttgctt-atgtattttcatcattagtgaaa--ggtcgtcttgatcccgactttgtttt-at 565838  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  565837 tttgtgctttttctgg 565822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 238 - 349
Target Start/End: Complemental strand, 34136345 - 34136235
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttcc-attattaataaaatgggtcgttttgatcccgactttattttta 336  Q
    ||||||||||| || ||||||||  || ||||||||||||||||| | |||||    || |||||||||| || |||||||||||||||||||| |||||    
T  34136345 cgtcccgcccgagatgaaagtgatcttatgtagggctttttgctttaagtattggttatcattaataaaaagg-tcgttttgatcccgacttta-tttta 34136248  T
Q  337 ttttgtgcttttt 349  Q
    |||||||||||||    
T  34136247 ttttgtgcttttt 34136235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 345
Target Start/End: Original strand, 842588 - 842695
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||  |||||||||||| || ||||||||| ||||||||||| |||  ||| ||||||||||   ||||| ||||||||||| ||  ||||||    
T  842588 cgtcccgcccaagacgaaagtgaacttatgtagggctctttgcttcatgaattgtcatcattaataaaaaaagtcgtcttgatcccgaccttgcttttat 842687  T
Q  338 tttgtgct 345  Q
    ||| ||||    
T  842688 tttatgct 842695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 345
Target Start/End: Original strand, 849764 - 849871
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||  |||||||||||| || ||||||||| ||||||||||| |||  ||| ||||||||||   ||||| ||||||||||| ||  ||||||    
T  849764 cgtcccgcccaagacgaaagtgaacttatgtagggctctttgcttcatgaattgtcatcattaataaaaaaagtcgtcttgatcccgaccttgcttttat 849863  T
Q  338 tttgtgct 345  Q
    ||| ||||    
T  849864 tttatgct 849871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 345
Target Start/End: Original strand, 1207768 - 1207875
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||  |||||||||||| || ||||||||| ||||||||||| |||  ||| ||||||||||   ||||| ||||||||||| ||  ||||||    
T  1207768 cgtcccgcccaagacgaaagtgaacttatgtagggctctttgcttcatgaattgtcatcattaataaaaaaagtcgtcttgatcccgaccttgcttttat 1207867  T
Q  338 tttgtgct 345  Q
    ||| ||||    
T  1207868 tttatgct 1207875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 352
Target Start/End: Complemental strand, 13267988 - 13267875
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgttttgatcccgactttattttta 336  Q
    ||||||||||| || |||| |||  |||||||||||||||||||| | |||||   |||  ||||||||| || ||||||| |||||||||||| |||||    
T  13267988 cgtcccgcccgagatgaaattgatcttgtgtagggctttttgctttaagtattggtcatctttaataaaaagg-tcgtttttatcccgacttta-tttta 13267891  T
Q  337 ttttgtgctttttctg 352  Q
    ||||||||||||||||    
T  13267890 ttttgtgctttttctg 13267875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 3427931 - 3427816
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgacttt-attttta 336  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||||||||||   |||| || ||||||||||||  ||||||    
T  3427931 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcattaataaaa-aagtcgcttcgatcccgactttgcttttta 3427833  T
Q  337 ttttgtgctttttctgg 353  Q
    |||| ||||||||||||    
T  3427832 ttttttgctttttctgg 3427816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 5205912 - 5205799
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| |||| ||||||| |||| ||||||||||||||  || ||||| ||| |||||| |||  |||||| ||| ||||||| ||  ||||||    
T  5205912 cgtcccacccgagacggaagtgaacttgtttagggctttttgctgtatctattttcatcattaatgaaa-aggtcgtcttggtcccgacctt-cttttat 5205815  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  5205814 tttgtgctttttctgg 5205799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 27973047 - 27972934
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| |||| ||||||| |||| |||||||||||||||   |||||| ||| |||||| ||| || ||| || |||||||||||| ||||  |    
T  27973047 cgtcccacccgagacggaagtgaacttgtttagggctttttgcttttcgtattttcatcattaatgaaaagg-tcgctt-gatcccgactttgttttatt 27972950  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  27972949 tttgtgctttttctgg 27972934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 351
Target Start/End: Complemental strand, 42634511 - 42634397
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgtttt-gatcccgactttattttt 335  Q
    ||||||||||| || ||||||||| | |||||||||||||| ||| | | | ||  ||| |||||||||| || ||||||| ||||||||||||  ||||    
T  42634511 cgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaagg-tcgtttttgatcccgactttgctttt 42634413  T
Q  336 attttgtgctttttct 351  Q
    ||||||||||||||||    
T  42634412 attttgtgctttttct 42634397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 251 - 351
Target Start/End: Complemental strand, 16269536 - 16269437
Alignment:
Q  251 acgaaagtgaatttgtgtagggctttttgcttcatgtat-ttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgcttttt 349  Q
    ||||||||||| |||||||||||| ||||||| | |||| |||||| ||||||||||   |||| |||||||||||||||  ||| |||| |||||||||    
T  16269536 acgaaagtgaacttgtgtagggctctttgctttaagtatcttccatcattaataaaa-aagtcgctttgatcccgacttt-gtttcatttcgtgcttttt 16269439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 8814468 - 8814582
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgtttt-gatcccgactttattttt 335  Q
    ||||||||||| || ||||||||| | |||||||||||||| ||| | | | ||  ||| ||||||||||  | ||||||| ||||||||||||  ||||    
T  8814468 cgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaatg-tcgtttttgatcccgactttgctttt 8814566  T
Q  336 attttgtgctttttct 351  Q
    ||||||||||||||||    
T  8814567 attttgtgctttttct 8814582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 349
Target Start/End: Complemental strand, 16486273 - 16486196
Alignment:
Q  270 gggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgcttttt 349  Q
    ||||||||||||| ||| |||| ||| |||||||||  || |||||||||||||||| ||  ||||||||||||||||||    
T  16486273 gggctttttgctttatgaattttcatcattaataaagagg-tcgttttgatcccgac-ttcgttttattttgtgcttttt 16486196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 27437801 - 27437914
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| |||| ||||||| |||| ||||||||||||||  || ||||| ||| |||||| |||  || ||| ||| ||||||| ||  ||||||    
T  27437801 cgtcccacccgagacggaagtgaacttgtttagggctttttgctgtatctattttcatcattaatgaaa-aggccgtcttggtcccgacctt-cttttat 27437898  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  27437899 tttgtgctttttctgg 27437914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 351
Target Start/End: Original strand, 12587710 - 12587793
Alignment:
Q  268 tagggctttttgcttcatgtatt-tccattattaataaaatgggtcgttttgatcccgactttatt-tttattttgtgctttttct 351  Q
    ||||||||||||||||| | ||| ||||| ||||||||||  ||||| || ||||||||||||  | |||||||||||||||||||    
T  12587710 tagggctttttgcttcaggcattctccatcattaataaaa--ggtcgcttcgatcccgactttgctctttattttgtgctttttct 12587793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 235 - 353
Target Start/End: Complemental strand, 8099464 - 8099348
Alignment:
Q  235 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 334  Q
    ||||||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| |  ||||    
T  8099464 ttccgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgacctcgtttt 8099367  T
Q  335 tattttgtgctttttctgg 353  Q
    |||||||||||||||||||    
T  8099366 tattttgtgctttttctgg 8099348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 14874155 - 14874268
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| |||||||||||| || ||||||| ||||||||| | ||||   ||| ||||||||||  |||||||||||||||||||||| ||||||    
T  14874155 cgtcccgcccgagacgaaagtgaacttatgtagggatttttgctttaagtatagtcatcattaataaaa-aggtcgttttgatcccgacttta-ttttat 14874252  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  14874253 tttgtgctttttctgg 14874268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 16365009 - 16365122
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||| ||||||  |||||||||||||||||||||  ||||||    
T  16365009 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcatttataaaaaaggtcgttttgatcccgactttgcttttat 16365108  T
Q  338 tttgtgctttttct 351  Q
    ||||||||||||||    
T  16365109 tttgtgctttttct 16365122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 22708181 - 22708294
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||| ||||||  |||||||||||||||||||||  ||||||    
T  22708181 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcatttataaaaaaggtcgttttgatcccgactttgcttttat 22708280  T
Q  338 tttgtgctttttct 351  Q
    ||||||||||||||    
T  22708281 tttgtgctttttct 22708294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 238 - 348
Target Start/End: Complemental strand, 3385776 - 3385667
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || ||||||||  |||||||||||||||||||| | | |||  ||| |||||||||| || ||||||||||||||||||| |||| ||    
T  3385776 cgtcccgcccgagatgaaagtgatcttgtgtagggctttttgctttaagaattgtcatcattaataaaaagg-tcgttttgatcccgactttgttttcat 3385678  T
Q  338 tttgtgctttt 348  Q
    |||||||||||    
T  3385677 tttgtgctttt 3385667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 12512283 - 12512395
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| |||||||||||| |||| ||||||||||| ||| | |||||| ||| |||||||||||   ||| ||||||||||||||| ||||||     
T  12512283 cgtcccacccgagacgaaagtgaacttgtttagggctttttcctttacgtattttcatcattaataaaat-aatcgctttgatcccgactttgtttttac 12512381  T
Q  338 tttgtgctttttct 351  Q
     |||||||| ||||    
T  12512382 cttgtgcttgttct 12512395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 238 - 350
Target Start/End: Original strand, 9187688 - 9187798
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || |||||| |  |||||||||| ||||||||| | | |||  ||| |||||||||| || |||||||||||||||||||  ||||||    
T  9187688 cgtcccgcccgagatgaaagttatcttgtgtagggttttttgctttaagaattgtcatcattaataaaaagg-tcgttttgatcccgacttt-gttttat 9187785  T
Q  338 tttgtgctttttc 350  Q
    |||||||||||||    
T  9187786 tttgtgctttttc 9187798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 349
Target Start/End: Original strand, 14921605 - 14921715
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||  |||||||||||| || ||||||||||||||||| | | |||  |||  ||||| |||  ||||| ||||||||||||||| |||| ||    
T  14921605 cgtcccgcccaagacgaaagtgaacttatgtagggctttttgctttaagcattgtcatcgttaat-aaagaggtcgctttgatcccgactttgttttcat 14921703  T
Q  338 tttgtgcttttt 349  Q
    ||||||||||||    
T  14921704 tttgtgcttttt 14921715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 239 - 349
Target Start/End: Complemental strand, 15571015 - 15570906
Alignment:
Q  239 gtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttatt 338  Q
    |||||||||  ||| |||||||| || ||||||||||||||||| | | |||  |||  ||||||||  || ||||||||||||||||||| |||| |||    
T  15571015 gtcccgcccaagacaaaagtgaacttatgtagggctttttgctttaagcattgtcatcgttaataaagagg-tcgttttgatcccgactttgttttcatt 15570917  T
Q  339 ttgtgcttttt 349  Q
    |||||||||||    
T  15570916 ttgtgcttttt 15570906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 239 - 349
Target Start/End: Complemental strand, 15575143 - 15575034
Alignment:
Q  239 gtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttatt 338  Q
    |||||||||  ||| |||||||| || ||||||||||||||||| | | |||  |||  ||||||||  || ||||||||||||||||||| |||| |||    
T  15575143 gtcccgcccaagacaaaagtgaacttatgtagggctttttgctttaagcattgtcatcgttaataaagagg-tcgttttgatcccgactttgttttcatt 15575045  T
Q  339 ttgtgcttttt 349  Q
    |||||||||||    
T  15575044 ttgtgcttttt 15575034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 253 - 351
Target Start/End: Complemental strand, 16724073 - 16723976
Alignment:
Q  253 gaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttct 351  Q
    ||||||||| || |||||||||||||||||   | |||  |||  ||||||||| || ||||||||||||||||||| |||| ||||||||||||||||    
T  16724073 gaaagtgaacttatgtagggctttttgctttgagcattgtcatctttaataaaaagg-tcgttttgatcccgactttgttttcattttgtgctttttct 16723976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 351
Target Start/End: Complemental strand, 3832047 - 3832006
Alignment:
Q  310 gtcgttttgatcccgactttatttttattttgtgctttttct 351  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  3832047 gtcgttttgatcccgactttgcttttattttgtgctttttct 3832006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 12509377 - 12509309
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaa 306  Q
    |||||| |||| |||||||||||| || | ||||| ||||||||| | |||||| ||| ||||||||||    
T  12509377 cgtcccacccgtgacgaaagtgaacttatttaggggtttttgctttacgtattttcatcattaataaaa 12509309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 15898794 - 15898750
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgctt 282  Q
    ||||||||||  |||||||||||| || |||||||||||||||||    
T  15898794 cgtcccgcccaagacgaaagtgaacttatgtagggctttttgctt 15898750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 351
Target Start/End: Original strand, 20557199 - 20557320
Alignment:
Q  232 tcattccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttat 331  Q
    ||||| ||||||||||| || ||||||||| |  ||||||||||||||||| | |  ||  ||| ||||||||||  |||||| |||||| ||||||| |    
T  20557199 tcatttcgtcccgcccgagatgaaagtgaactgatgtagggctttttgctttaagatttgtcatcattaataaaa-aggtcgtcttgatctcgactttgt 20557297  T
Q  332 tttt---attttgtgctttttct 351  Q
    ||||   | ||||||||||||||    
T  20557298 ttttttaaatttgtgctttttct 20557320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 235 - 353
Target Start/End: Original strand, 41002112 - 41002228
Alignment:
Q  235 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 334  Q
    ||||||||| |||| | | ||||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| || ||||    
T  41002112 ttccgtcccacccgaggcaaaagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgaccttgtttt 41002209  T
Q  335 tattttgtgctttttctgg 353  Q
    |||||| ||||||||||||    
T  41002210 tattttttgctttttctgg 41002228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 235 - 353
Target Start/End: Original strand, 41010894 - 41011010
Alignment:
Q  235 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 334  Q
    ||||||||| |||| | | ||||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| || ||||    
T  41010894 ttccgtcccacccgaggcaaaagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgaccttgtttt 41010991  T
Q  335 tattttgtgctttttctgg 353  Q
    |||||| ||||||||||||    
T  41010992 tattttttgctttttctgg 41011010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 8808554 - 8808667
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||| ||||||  |||||||||||||||||||||  ||||||    
T  8808554 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcatttataaaaaaggtcgttttgatcccgactttgcttttat 8808653  T
Q  338 tttgtgctttttct 351  Q
    ||||||||||||||    
T  8808654 tttgtgctttttct 8808667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 21611983 - 21612096
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||| ||||||  |||||||||||||||||||||  ||||||    
T  21611983 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcatttataaaaaaggtcgttttgatcccgactttgcttttat 21612082  T
Q  338 tttgtgctttttct 351  Q
    ||||||||||||||    
T  21612083 tttgtgctttttct 21612096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 11184203 - 11184316
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgttttgatcccgactttattttta 336  Q
    ||||||||||| || ||||||||  ||||||| |||||||||||| | ||||||  ||| |||||||||| || ||||||||||||||||||| ||||||    
T  11184203 cgtcccgcccgagaggaaagtgatcttgtgtatggctttttgctttaagtatttgtcatcattaataaaaagg-tcgttttgatcccgactttgttttta 11184301  T
Q  337 ttttgtgctttttct 351  Q
     ||||||||||||||    
T  11184302 gtttgtgctttttct 11184316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 238 - 352
Target Start/End: Complemental strand, 30093093 - 30092981
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || ||||||||  |||||||||| ||||||||| | | |||  ||| |||||||||| || |||||||||||||||||||| ||||||    
T  30093093 cgtcccgcccgagatgaaagtgatcttgtgtagggttttttgctttaagaattgtcatcattaataaaaagg-tcgttttgatcccgacttta-ttttat 30092996  T
Q  338 tttgtgctttttctg 352  Q
    |||||||||||||||    
T  30092995 tttgtgctttttctg 30092981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 351
Target Start/End: Complemental strand, 12476337 - 12476225
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||| |||||  ||||||||||| |||||||||||||||||||| | | |||   || |||||||||| || ||||||||||||||||||| |||||||    
T  12476337 cgtcctgcccgatacgaaagtgaacttgtgtagggctttttgctttaagaattgtaatcattaataaaaagg-tcgttttgatcccgactttgtttttat 12476239  T
Q  338 tttgtgctttttct 351  Q
    | ||||||||||||    
T  12476238 tctgtgctttttct 12476225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 351
Target Start/End: Complemental strand, 46396727 - 46396627
Alignment:
Q  250 gacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgcttttt 349  Q
    |||||||||||| | |||||||||||||||||| | |  ||  ||| |||||||||| || |||||||||||||||||||||||| ||||||||||||||    
T  46396727 gacgaaagtgaactagtgtagggctttttgctttaagatttgtcatcattaataaaaagg-tcgttttgatcccgactttattttcattttgtgcttttt 46396629  T
Q  350 ct 351  Q
    ||    
T  46396628 ct 46396627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 238 - 352
Target Start/End: Complemental strand, 23285369 - 23285256
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatt-tccattattaataaaatgggtcgttttgatcccgactttattttta 336  Q
    ||||||||||| || ||||||||  |||||||||||||||||||| | |||||   ||| ||||||||||  ||| |||||||||||||||||| |||||    
T  23285369 cgtcccgcccgagatgaaagtgatcttgtgtagggctttttgctttaagtattggtcatcattaataaaa-aggttgttttgatcccgacttta-tttta 23285272  T
Q  337 ttttgtgctttttctg 352  Q
    ||||||||||||||||    
T  23285271 ttttgtgctttttctg 23285256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 14421591 - 14421704
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggcttttt-gcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttattttta 336  Q
    ||||||||||| || ||||||||| | ||| |||||||||| |||| | | |||  |||||||||||||| || ||||||||||||||||||| |||| |    
T  14421591 cgtcccgcccgagatgaaagtgaactggtgaagggcttttttgctttaagaattgtcattattaataaaaagg-tcgttttgatcccgactttgttttca 14421689  T
Q  337 ttttgtgctttttct 351  Q
    |||||||||||||||    
T  14421690 ttttgtgctttttct 14421704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 8609027 - 8609143
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatt-tccattattaataaaatgggtcgttttgatcccgacttt-attttt 335  Q
    ||||||||| | || ||||||||  |||||||||||||||||||| | |||||   ||| ||||||||||  |||||||||||||||||||||  |||||    
T  8609027 cgtcccgcctgagatgaaagtgatcttgtgtagggctttttgctttaagtattggtcatcattaataaaa-aggtcgttttgatcccgactttgcttttt 8609125  T
Q  336 attttgtgctttttctgg 353  Q
    ||||||||||||||||||    
T  8609126 attttgtgctttttctgg 8609143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 353
Target Start/End: Complemental strand, 3241737 - 3241636
Alignment:
Q  250 gacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgcttttt 349  Q
    |||||||| | | |||| ||||||||||||||  | |||||| ||| | |||||||| |  ||||||||||||||||||| |||||||||||||||||||    
T  3241737 gacgaaaggggacttgtttagggctttttgctatacgtattttcatcactaataaaaag--tcgttttgatcccgactttgtttttattttgtgcttttt 3241640  T
Q  350 ctgg 353  Q
    ||||    
T  3241639 ctgg 3241636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 238 - 352
Target Start/End: Complemental strand, 13109033 - 13108920
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgttttgatcccgactttattttta 336  Q
    ||||||||||| || |||| |||  |||||||||||||||||||| | |||||   |||  ||||||||| || |||||||||||||||||||| |||||    
T  13109033 cgtcccgcccgagatgaaattgatcttgtgtagggctttttgctttaagtattggtcatctttaataaaaagg-tcgttttgatcccgacttta-tttta 13108936  T
Q  337 ttttgtgctttttctg 352  Q
    ||||||||||||||||    
T  13108935 ttttgtgctttttctg 13108920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 240 - 351
Target Start/End: Complemental strand, 15533365 - 15533255
Alignment:
Q  240 tcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattt 339  Q
    ||||||||  || ||||||||| | |||||||||||||||||| | |  ||  ||| |||||||||| || |||||||||||||||||||| ||| ||||    
T  15533365 tcccgcccaggatgaaagtgaactagtgtagggctttttgctttaagatttgtcatcattaataaaaagg-tcgttttgatcccgactttactttcattt 15533267  T
Q  340 tgtgctttttct 351  Q
    ||||||||||||    
T  15533266 tgtgctttttct 15533255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 334
Target Start/End: Original strand, 70976 - 71072
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatt-tccattattaataaaatgggtcgttttgatcccgactttatttt 334  Q
    ||||||||||| || ||||||||  |||||||||||||||||||| | |||||   ||| ||||||||||  ||||||||||||||||||||||||||    
T  70976 cgtcccgcccgagatgaaagtgatcttgtgtagggctttttgctttaagtattggtcatcattaataaaa-aggtcgttttgatcccgactttatttt 71072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 353
Target Start/End: Complemental strand, 26383516 - 26383401
Alignment:
Q  239 gtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgacttta--ttttta 336  Q
    |||||||||  |||||||||||| || |||||| ||||||| ||||||||||| ||| ||||||||||  ||||  ||||||||   |||||  ||||||    
T  26383516 gtcccgcccaagacgaaagtgaacttatgtaggactttttgtttcatgtattttcatcattaataaaa-aggtcaatttgatcctagctttattttttta 26383418  T
Q  337 ttttgtgctttttctgg 353  Q
    |||||||||||||||||    
T  26383417 ttttgtgctttttctgg 26383401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 351
Target Start/End: Original strand, 8620472 - 8620582
Alignment:
Q  240 tcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattt 339  Q
    ||||||||  || ||||||||| | |||||||||||||||||| | |  ||  ||| |||||||||| || ||||||| |||||||||||| ||| ||||    
T  8620472 tcccgcccaggatgaaagtgaactagtgtagggctttttgctttaagatttgtcatcattaataaaaagg-tcgttttaatcccgactttactttcattt 8620570  T
Q  340 tgtgctttttct 351  Q
    ||||||||||||    
T  8620571 tgtgctttttct 8620582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 345
Target Start/End: Original strand, 33568697 - 33568803
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || ||||||||  |||||||||||||||||||||||| |||  ||| ||||||||||   ||||| ||||||||||| ||  ||||||    
T  33568697 cgtcccgcccgagatgaaagtgatcttgtgtagggctttttgcttcatgaattgtcatcattaataaaa-aagtcgtcttgatcccgaccttgcttttat 33568795  T
Q  338 tttgtgct 345  Q
    ||| ||||    
T  33568796 tttatgct 33568803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 6198431 - 6198544
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgttttgatcccgactttattttta 336  Q
    ||||||||||| || ||||||||| | |||||||||||||| ||| | | | ||  ||| |||||||||| || |||||||||||||| ||||| ||| |    
T  6198431 cgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaagg-tcgttttgatcccgcctttactttca 6198529  T
Q  337 ttttgtgctttttct 351  Q
    |||||||||||||||    
T  6198530 ttttgtgctttttct 6198544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 25267305 - 25267416
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| | ||| ||||||||||| ||||| ||||||||| |||||||| ||| |||| | |||  |||||  ||||||||||||||  ||||||    
T  25267305 cgtcccacccgaggcgagagtgaatttgtttagggatttttgctttatgtattttcatcattagtgaaa--ggtcg-cttgatcccgacttt-gttttat 25267400  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  25267401 tttgtgctttttctgg 25267416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 10719036 - 10718923
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| |||| ||||||| |||| ||||||||||||||  || ||||| ||| |||||| |||  |||||| ||| ||||||| ||  ||||||    
T  10719036 cgtcccacccgagacggaagtgaacttgtttagggctttttgctgtatctattttcatcattaatgaaa-aggtcgtcttggtcccgacctt-cttttat 10718939  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  10718938 tttgtgctttttctgg 10718923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 352
Target Start/End: Complemental strand, 14395265 - 14395164
Alignment:
Q  250 gacgaaagtgaatttgtgtagggctttttgcttcatgtattt-ccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttt 348  Q
    ||||||||||| ||| |  ||||||||||||||||||||||| |||| ||||||||||    |||||||||||| ||||||  ||| |||||||||||||    
T  14395265 gacgaaagtgagtttataaagggctttttgcttcatgtattttccatcattaataaaaaat-tcgttttgatcctgactttgcttt-attttgtgctttt 14395168  T
Q  349 tctg 352  Q
    ||||    
T  14395167 tctg 14395164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 351
Target Start/End: Original strand, 15623714 - 15623811
Alignment:
Q  253 gaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttct 351  Q
    ||||||||| | |||||||||||||||||| | | |||  ||| |||||||||| || |||||||||||||| |||| |||| | ||||||||| ||||    
T  15623714 gaaagtgaactggtgtagggctttttgcttaaagaattgtcatcattaataaaaagg-tcgttttgatcccgcctttgttttcactttgtgcttcttct 15623811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 352
Target Start/End: Original strand, 27884281 - 27884392
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| |||||||||||| |||| ||||| ||||||||| |||||||| ||| |||| |  ||  |||||| | |||||||||||| ||||||     
T  27884281 cgtcccacccgagacgaaagtgaacttgtttaggg-tttttgctttatgtattttcatcattagttgaa-aggtcgtctcgatcccgactttgttttta- 27884377  T
Q  338 tttgtgctttttctg 352  Q
    |||||||||||||||    
T  27884378 tttgtgctttttctg 27884392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 3680529 - 3680644
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgacttt-attttta 336  Q
    ||||||||||| || ||||||||| | | |||||||||||||||| | | |||  ||| ||||||||||   |||| || ||||||||||||  ||||||    
T  3680529 cgtcccgcccgagatgaaagtgaactggcgtagggctttttgctttaagaattgtcatcattaataaaa-aagtcgcttcgatcccgactttgcttttta 3680627  T
Q  337 ttttgtgctttttctgg 353  Q
    |||| ||||||||||||    
T  3680628 ttttttgctttttctgg 3680644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 353
Target Start/End: Complemental strand, 8201867 - 8201790
Alignment:
Q  274 tttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttctgg 353  Q
    |||||||||  ||||||| ||| |||||| |||  |||||| | ||||||||| || |||||||||||||||||||||||    
T  8201867 tttttgctttttgtattttcatcattaatgaaa--ggtcgtctcgatcccgaccttgtttttattttgtgctttttctgg 8201790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 30017098 - 30017213
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgacttt-attttta 336  Q
    ||||||||||| || ||||||||| | | |||||||||||||||| | | |||  ||| ||||||||||   |||| || ||||||||||||  ||||||    
T  30017098 cgtcccgcccgagatgaaagtgaactggcgtagggctttttgctttaagaattgtcatcattaataaaa-aagtcgcttcgatcccgactttgcttttta 30017196  T
Q  337 ttttgtgctttttctgg 353  Q
    |||| ||||||||||||    
T  30017197 ttttttgctttttctgg 30017213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 334
Target Start/End: Complemental strand, 14884597 - 14884508
Alignment:
Q  244 gcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 334  Q
    ||||| || |||||||||   |||||||||||||||||| | | |||  ||| ||||||||||  | ||||||||||||||||||||||||    
T  14884597 gcccgagatgaaagtgaacaggtgtagggctttttgctttaagaattgtcatcattaataaaaaag-tcgttttgatcccgactttatttt 14884508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 353
Target Start/End: Original strand, 17929635 - 17929731
Alignment:
Q  253 gaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttctg 352  Q
    |||||| || |||| ||||| ||||||||| |||||||| ||| |||||| |||  |||||| | |||||||||||| |||| |||| ||||||||||||    
T  17929635 gaaagttaaattgtttaggg-tttttgctttatgtattttcatcattaatgaaa--ggtcgtctcgatcccgactttgtttt-atttcgtgctttttctg 17929730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 256 - 353
Target Start/End: Complemental strand, 59800 - 59705
Alignment:
Q  256 agtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttctgg 353  Q
    ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||| ||||||||||| || |||||||||||||||||||||||    
T  59800 agtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgtcttgatcccgaccttgtttttattttgtgctttttctgg 59705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 238 - 349
Target Start/End: Original strand, 32563 - 32674
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgacttt-attttta 336  Q
    ||||||||||| |||||||||||| || ||||||||||||||| | | | ||| |||| ||||||||||  |||||||||||||||||||||  ||||||    
T  32563 cgtcccgcccgagacgaaagtgaacttatgtagggctttttgcattaagaattgccatcattaataaaa-aggtcgttttgatcccgactttgtttttta 32661  T
Q  337 ttttgtgcttttt 349  Q
    |||||||||||||    
T  32662 ttttgtgcttttt 32674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 239 - 351
Target Start/End: Complemental strand, 191537 - 191426
Alignment:
Q  239 gtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttatt 338  Q
    |||||||||| |||||||||||| ||||||||  |||||||||| | | |||  ||| |||||||||| || ||||||||| ||||||||| ||||||||    
T  191537 gtcccgcccgagacgaaagtgaacttgtgtagaactttttgctttaagcattgtcatcattaataaaaagg-tcgttttgaccccgactttgtttttatt 191439  T
Q  339 ttgtgctttttct 351  Q
    |||||||||||||    
T  191438 ttgtgctttttct 191426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 17679295 - 17679182
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| |||||| |||  |||||  ||||||||||| || |||||||    
T  17679295 cgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatgaaa--ggtcgccttgatcccgaccttgtttttat 17679198  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  17679197 tttgtgctttttctgg 17679182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 39841946 - 39841833
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| ||| ||||||  ||  |||||  ||||||||||| || |||||||    
T  39841946 cgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattttcatcattaatggaa--ggtcgccttgatcccgaccttgtttttat 39841849  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  39841848 tttgtgctttttctgg 39841833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 353
Target Start/End: Original strand, 6666813 - 6666915
Alignment:
Q  253 gaaagtgaatttgtgtagggcttttt----gcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttt 348  Q
    |||||||||||||| |||||||||||    |||| |||||||| ||| |||||| |||  |||||| | |||||||||||| ||||||||||||||||||    
T  6666813 gaaagtgaatttgtttagggctttttttttgctttatgtattttcatcattaatgaaa--ggtcgtctcgatcccgactttgtttttattttgtgctttt 6666910  T
Q  349 tctgg 353  Q
    |||||    
T  6666911 tctgg 6666915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 32003031 - 32003143
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||||||||||  ||||||||||||| ||||||| |||| |     
T  32003031 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcattaataaaa-aggtcgttttgatctcgactttgttttcac 32003129  T
Q  338 tttgtgctttttct 351  Q
    ||||||||| ||||    
T  32003130 tttgtgcttcttct 32003143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 348
Target Start/End: Complemental strand, 25856540 - 25856446
Alignment:
Q  253 gaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttt 348  Q
    ||||||||| | |||||||||||||||||| | | |||  ||| |||||||||| || ||||||||||||||||||| |||| |||||||| ||||    
T  25856540 gaaagtgaactggtgtagggctttttgctttaagaattgtcatcattaataaaaagg-tcgttttgatcccgactttgttttcattttgtgttttt 25856446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 351
Target Start/End: Complemental strand, 21479431 - 21479317
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgtttt-gatcccgactttattttt 335  Q
    ||||||||||| || ||||||||| | |||||||||||||| ||| | | | ||  ||| |||||||||| || ||||||| ||||||||||||  ||||    
T  21479431 cgtcccgcccgagatgaaagtgaactggtgtagggctttttactttaagaaattgtcatcattaataaaaagg-tcgtttttgatcccgactttgctttt 21479333  T
Q  336 attttgtgctttttct 351  Q
    ||||||||||||||||    
T  21479332 attttgtgctttttct 21479317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 338
Target Start/End: Complemental strand, 24703115 - 24703031
Alignment:
Q  253 gaaagtgaatttgtgtagggctttttgcttcatgta-tttccattattaataaaatgggtcgttttgatcccgactttatttttatt 338  Q
    ||||||||| |||| |||| |||||||||||||||| ||||||| ||||||||||    ||||||||||| ||||||| ||||||||    
T  24703115 gaaagtgaacttgtttaggtctttttgcttcatgtattttccatcattaataaaa--attcgttttgatctcgactttgtttttatt 24703031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 20736965 - 20737077
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || ||||||||| ||||||||||||||| |||| | | |||  |||  |||| ||||    ||||||||||||||||||| |||| ||    
T  20736965 cgtcccgcccgagatgaaagtgaacttgtgtagggcttttcgctttaagaattgtcatcgttaacaaaa-aattcgttttgatcccgactttgttttcat 20737063  T
Q  338 tttgtgctttttct 351  Q
    ||||||||| ||||    
T  20737064 tttgtgcttcttct 20737077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 20741834 - 20741946
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || ||||||||| ||||||||||||||| |||| | | |||  |||  |||| ||||    ||||||||||||||||||| |||| ||    
T  20741834 cgtcccgcccgagatgaaagtgaacttgtgtagggcttttcgctttaagaattgtcatcgttaacaaaa-aattcgttttgatcccgactttgttttcat 20741932  T
Q  338 tttgtgctttttct 351  Q
    ||||||||| ||||    
T  20741933 tttgtgcttcttct 20741946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 20745523 - 20745635
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || ||||||||| ||||||||||||||| |||| | | |||  |||  |||| ||||    ||||||||||||||||||| |||| ||    
T  20745523 cgtcccgcccgagatgaaagtgaacttgtgtagggcttttcgctttaagaattgtcatcgttaacaaaa-aattcgttttgatcccgactttgttttcat 20745621  T
Q  338 tttgtgctttttct 351  Q
    ||||||||| ||||    
T  20745622 tttgtgcttcttct 20745635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 351
Target Start/End: Complemental strand, 22092695 - 22092589
Alignment:
Q  245 cccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtat-ttccattattaataaaatgggtcgttttgatcccgacttta-tttttattttgt 342  Q
    |||| |||||||||||| |  | |||| ||||||||||| ||||| |||||| |||||||||| |  ||| || ||||||||||||  ||||||||||||    
T  22092695 cccgagacgaaagtgaactcatttaggactttttgcttcgtgtatcttccatcattaataaaaag--tcgcttcgatcccgactttgctttttattttgt 22092598  T
Q  343 gctttttct 351  Q
    ||| |||||    
T  22092597 gctctttct 22092589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 9613 - 9726
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgacttt-attttta 336  Q
    ||||||||||| || ||||||||| |||||||||||||||||||| | | |||  ||| ||||||||||  |||||| ||||||||||||||  ||||||    
T  9613 cgtcccgcccgagatgaaagtgaacttgtgtagggctttttgctttaagaattgtcatcattaataaaa-aggtcgtcttgatcccgactttgtttttta 9711  T
Q  337 ttttgtgctttttct 351  Q
    |||||||||||||||    
T  9712 ttttgtgctttttct 9726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0600 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0600
Description:

Target: scaffold0600; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 9258 - 9370
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| ||| |||  ||| ||||||||||  ||||||||||||||||||||| |||| |     
T  9258 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttatgaattgtcatcattaataaaa-aggtcgttttgatcccgactttgttttcac 9356  T
Q  338 tttgtgctttttct 351  Q
    ||||||||| ||||    
T  9357 tttgtgcttcttct 9370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 351
Target Start/End: Complemental strand, 11931 - 11818
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || || |||||| | |||||||||||||||||| | | |||  ||| ||||||||||  ||||||||||||||||||||| | || ||    
T  11931 cgtcccgcccgagatgatagtgaactggtgtagggctttttgctttaagaattgtcatcattaataaaagtggtcgttttgatcccgactttgtcttcat 11832  T
Q  338 tttgtgctttttct 351  Q
    ||||||||||||||    
T  11831 tttgtgctttttct 11818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0582 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 238 - 351
Target Start/End: Complemental strand, 4525 - 4413
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtat-ttccattattaataaaatgggtcgttttgatcccgactttattttta 336  Q
    ||||||||| | |||||||||||| |  | ||||||||||||||||||| || |||||| |||||||||| |  ||| || |||||||||||| ||||||    
T  4525 cgtcccgcctgagacgaaagtgaactcatttagggctttttgcttcatgcatcttccatcattaataaaaag--tcgattcgatcccgactttgttttta 4428  T
Q  337 ttttgtgctttttct 351  Q
    |||||||||||||||    
T  4427 ttttgtgctttttct 4413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 24572 - 24458
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || ||||||||| || ||||| ||||||| ||| | | |||  ||| |||||||||| || ||||||||||||||||||| |||| ||    
T  24572 cgtcccgcccgagatgaaagtgaacttttgtagagcttttttctttaagaattgtcatcattaataaaaagg-tcgttttgatcccgactttgttttcat 24474  T
Q  338 tttgtgctttttctgg 353  Q
    ||||||||||||||||    
T  24473 tttgtgctttttctgg 24458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0605 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0605
Description:

Target: scaffold0605; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 353
Target Start/End: Complemental strand, 5004 - 4906
Alignment:
Q  252 cgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttct 351  Q
    ||||||||||||||| |||||||| |||||| |||||||| ||||||| || |||  |||||| ||||||||||| ||  ||||||||||||||||||||    
T  5004 cgaaagtgaatttgtttagggcttcttgctttatgtattttcattattgatgaaa--ggtcgtcttgatcccgacctt-gttttattttgtgctttttct 4908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0327 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0327
Description:

Target: scaffold0327; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 14988 - 15103
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgacttt-attttta 336  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| | | |||  ||| ||||||||||  ||| ||||||||||| |||||  ||||||    
T  14988 cgtcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagaattgtcatcattaataaaa-aggttgttttgatcccaactttgtttttta 15086  T
Q  337 ttttgtgctttttctgg 353  Q
    |||||||||||||||||    
T  15087 ttttgtgctttttctgg 15103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 238 - 352
Target Start/End: Complemental strand, 3584 - 3471
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatt-tccattattaataaaatgggtcgttttgatcccgactttattttta 336  Q
    |||| |||||| || ||||||||  |||||||||||||||||||| | |||||   ||| ||||||||||  ||||||||||||||| |||||| |||||    
T  3584 cgtctcgcccgagatgaaagtgatcttgtgtagggctttttgctttaagtattggtcatcattaataaaa-aggtcgttttgatcccaacttta-tttta 3487  T
Q  337 ttttgtgctttttctg 352  Q
    ||||||||||||||||    
T  3486 ttttgtgctttttctg 3471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 238 - 352
Target Start/End: Original strand, 18456 - 18569
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttc-cattattaataaaatgggtcgttttgatcccgactttattttta 336  Q
    ||||||||||| || ||||||||  ||||||||||||||||||||   |||||   ||| |||||||||| || |||||||||| ||||||||| |||||    
T  18456 cgtcccgcccgagatgaaagtgatcttgtgtagggctttttgctttgagtattggtcatcattaataaaaagg-tcgttttgattccgacttta-tttta 18553  T
Q  337 ttttgtgctttttctg 352  Q
    ||||||||||||||||    
T  18554 ttttgtgctttttctg 18569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 238 - 349
Target Start/End: Complemental strand, 19898 - 19788
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| || ||||||||| ||||||| |||||||||||| | | |||  ||| ||||||||||  | ||||||||||||||||||| |||| ||    
T  19898 cgtcccacccgagatgaaagtgaacttgtgtatggctttttgctttaagaattgtcatcattaataaaaatg-tcgttttgatcccgactttgttttcat 19800  T
Q  338 tttgtgcttttt 349  Q
    ||||||||||||    
T  19799 tttgtgcttttt 19788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 240 - 351
Target Start/End: Original strand, 11410 - 11520
Alignment:
Q  240 tcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattt 339  Q
    ||||||||| || ||||||||| | |||||||||||||||||| | |  ||  ||| |||||||||| || ||||||||||||||||||| |||||||||    
T  11410 tcccgcccgagatgaaagtgaactggtgtagggctttttgctttaagatttgtcatcattaataaaaagg-tcgttttgatcccgactttgtttttattt 11508  T
Q  340 tgtgctttttct 351  Q
    ||| ||| ||||    
T  11509 tgttcttcttct 11520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 351
Target Start/End: Complemental strand, 8624 - 8512
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    |||||| |||| |||||||||||| |||| ||||||||||| ||| | |||||| ||| |||||||||||   ||| ||||||||||||||| ||||||     
T  8624 cgtcccacccgagacgaaagtgaacttgtttagggctttttcctttacgtattttcatcattaataaaat-aatcgctttgatcccgactttgtttttac 8526  T
Q  338 tttgtgctttttct 351  Q
     |||||||| ||||    
T  8525 cttgtgcttgttct 8512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 11100 - 11168
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaa 306  Q
    |||||| |||| |||||||||||| || | ||||| ||||||||| | |||||| ||| ||||||||||    
T  11100 cgtcccacccgtgacgaaagtgaacttatttaggggtttttgctttacgtattttcatcattaataaaa 11168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 254 - 353
Target Start/End: Complemental strand, 28612 - 28515
Alignment:
Q  254 aaagtgaatttgtgtagggctttttgcttcatgtattt-ccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttctg 352  Q
    |||||||| |||||| ||||| || ||||||||||||| |||| |||||||||| |  || |||||||||||||||| |||||||||||||||||| |||    
T  28612 aaagtgaacttgtgttgggctgtt-gcttcatgtattttccatcattaataaaaag--tcattttgatcccgactttgtttttattttgtgcttttcctg 28516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0441 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0441
Description:

Target: scaffold0441; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 238 - 349
Target Start/End: Original strand, 7218 - 7329
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttattttt-a 336  Q
    ||||||||||  |||||||||||| || ||||||||||||||||| | ||||   |||  |||||||||  ||||||||||||||||||||| ||||| |    
T  7218 cgtcccgcccaagacgaaagtgaacttatgtagggctttttgctttaagtatcgtcatcgttaataaaa-aggtcgttttgatcccgactttgtttttca 7316  T
Q  337 ttttgtgcttttt 349  Q
    ||||||| |||||    
T  7317 ttttgtgtttttt 7329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 238 - 350
Target Start/End: Original strand, 32104 - 32214
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| || ||||||||| | ||| ||||||||||||||   | |||  ||| ||||||||||  || ||||||||||||||||||| ||||||    
T  32104 cgtcccgcccgagatgaaagtgaactggtgaagggctttttgcttttagcattgtcataattaataaaa-aggccgttttgatcccgacttta-ttttat 32201  T
Q  338 tttgtgctttttc 350  Q
    |||||||||||||    
T  32202 tttgtgctttttc 32214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 351
Target Start/End: Complemental strand, 16828 - 16746
Alignment:
Q  268 tagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttct 351  Q
    ||||||||||||||| | | |||| ||| |||||||||| || ||||||||||||||||||| |||||||||| ||||| ||||    
T  16828 tagggctttttgctttaagaattttcatcattaataaaaagg-tcgttttgatcccgactttgtttttattttttgcttcttct 16746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 353
Target Start/End: Original strand, 153017 - 153126
Alignment:
Q  243 cgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgta-tttccattattaataaaatgggtcgttttgatcccgactttatttttattttg 341  Q
    |||||| |||||||||||| ||||||||||||||||||||| |||| ||||||| |||||| |||   | ||||||||||||||| ||  ||| |||||     
T  153017 cgcccgagacgaaagtgaacttgtgtagggctttttgcttcttgtattttccatcattaattaaa-aagccgttttgatcccgacctt-gtttcatttta 153114  T
Q  342 tgctttttctgg 353  Q
    ||||||||||||    
T  153115 tgctttttctgg 153126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 387 - 498
Target Start/End: Original strand, 154344 - 154448
Alignment:
Q  387 gaataatcttgtacaaatgtctagatacaatcattcacttactaaaatcaaacaaaaatcatatatgcagattaaacattgataaacccgtttaacacct 486  Q
    |||||||| | | |||||||||  |||||||||||||||| |||||||||||       |||| |||| ||||||||||||||||  ||||| ||||| |    
T  154344 gaataatcctttccaaatgtctgcatacaatcattcactttctaaaatcaaa-------cataaatgcggattaaacattgataagtccgttgaacacat 154436  T
Q  487 tacccatgtact 498  Q
    || |||||||||    
T  154437 taaccatgtact 154448  T

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Target: scaffold0068 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 253 - 351
Target Start/End: Complemental strand, 22068 - 21971
Alignment:
Q  253 gaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttttct 351  Q
    ||||||||| | |||||||||||||||||| | | |||  ||| |||||||||| || ||||||||||||||||||| |||| | ||||||||| ||||    
T  22068 gaaagtgaactggtgtagggctttttgcttaaagaattgtcatcattaataaaaagg-tcgttttgatcccgactttgttttcactttgtgcttcttct 21971  T

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Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 238 - 348
Target Start/End: Original strand, 99727 - 99836
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttat 337  Q
    ||||||||||| |  ||||||||| | |||||||||||||||||| | | |||  ||| | |||||||| || ||||||||| ||||||||| |||| ||    
T  99727 cgtcccgcccgaggtgaaagtgaactggtgtagggctttttgctttaagaattgtcatcactaataaaaagg-tcgttttgaacccgactttgttttcat 99825  T
Q  338 tttgtgctttt 348  Q
    |||||||||||    
T  99826 tttgtgctttt 99836  T

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Target: scaffold0362 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 345
Target Start/End: Complemental strand, 882 - 775
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgacttt-attttta 336  Q
    |||||| |||| || ||||||||| | |||| ||||||||||||| | | |||  ||| |||||||||| || |||||||||||||||||||  ||||||    
T  882 cgtcccacccgagatgaaagtgaactggtgtcgggctttttgctttaagaattgtcatcattaataaaaagg-tcgttttgatcccgactttgtttttta 784  T
Q  337 ttttgtgct 345  Q
    |||||||||    
T  783 ttttgtgct 775  T

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Target: scaffold0114 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 348
Target Start/End: Complemental strand, 30896 - 30802
Alignment:
Q  253 gaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttttattttgtgctttt 348  Q
    ||||||||| | |||||| ||||||||||| | | |||  ||| ||||||||||  | ||||||||||||||||||| |||| |||||||||||||    
T  30896 gaaagtgaactggtgtagagctttttgctttaagaattgtcatcattaataaaaaag-tcgttttgatcccgactttgttttcattttgtgctttt 30802  T

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Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 353
Target Start/End: Complemental strand, 70859 - 70744
Alignment:
Q  235 ttccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttatttt 334  Q
    ||||||||| |||| | || ||||||| |||| ||||||||||||||| |||||||| ||| | |||| |||  |||||| | |||||| || ||  |||    
T  70859 ttccgtcccacccgaggcgcaagtgaacttgtttagggctttttgctttatgtattttcatcactaatgaaa--ggtcgtctcgatcccaacctt-gttt 70763  T
Q  335 tattttgtgctttttctgg 353  Q
    |||||||||||||||||||    
T  70762 tattttgtgctttttctgg 70744  T

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Target: scaffold0015 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 165957 - 166070
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggcttttt-gcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttattttta 336  Q
    |||||| |||| |||  ||||||| |||| ||||||||||| ||||  ||| ||| ||| |||||| |||  | ||| ||||||||||||||| ||||||    
T  165957 cgtcccacccgagactgaagtgaacttgtttagggcttttttgctttgtgtcttttcatcattaattaaaaag-tcgctttgatcccgactttgttttta 166055  T
Q  337 ttttgtgctttttct 351  Q
    |||||||||||||||    
T  166056 ttttgtgctttttct 166070  T

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Target: scaffold0029 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 349
Target Start/End: Original strand, 75424 - 75535
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtatttccattattaataaaatgggtcgttttgatcccgactttattttt-a 336  Q
    ||||||||||  |||||||||||| || ||||||||||||||||| | | ||   |||  |||||||||  ||||||||||||||| ||||| ||||| |    
T  75424 cgtcccgcccaagacgaaagtgaacttatgtagggctttttgctttaagcatcgtcatcgttaataaaa-aggtcgttttgatcccaactttgtttttca 75522  T
Q  337 ttttgtgcttttt 349  Q
    ||||||| |||||    
T  75523 ttttgtgtttttt 75535  T

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Target: scaffold0016 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 19535 - 19579
Alignment:
Q  309 ggtcgttttgatcccgactttatttttattttgtgctttttctgg 353  Q
    |||||| | |||||||||||| |||||||||||||||||||||||    
T  19535 ggtcgtctcgatcccgactttgtttttattttgtgctttttctgg 19579  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 335
Target Start/End: Original strand, 302238 - 302341
Alignment:
Q  232 tcattccgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgta-tttccattattaataaaatgggtcgttttgatcccgacttta 330  Q
    ||||| ||||||||||  |||||||||||| || | ||||||||||||||||| | | ||||||| |||||||| |   || |||||||||||||||||     
T  302238 tcatttcgtcccgcccaagacgaaagtgaacttatttagggctttttgcttcaggcattttccatcattaataaga-aagttgttttgatcccgactttg 302336  T
Q  331 ttttt 335  Q
    |||||    
T  302337 ttttt 302341  T

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Target: scaffold0243 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 351
Target Start/End: Original strand, 17796 - 17829
Alignment:
Q  318 gatcccgactttatttttattttgtgctttttct 351  Q
    |||||||||||| |||||||||||||||||||||    
T  17796 gatcccgactttgtttttattttgtgctttttct 17829  T

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Target: scaffold0125 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 12496 - 12565
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtat-ttccattattaataaaa 306  Q
    ||||||||||  |||||||||||| || | ||||||||||||||||| | || |||||| ||||||||||    
T  12496 cgtcccgcccaagacgaaagtgaacttatttagggctttttgcttcaggcatgttccatcattaataaaa 12565  T

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Target: scaffold0023 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 142605 - 142552
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtattt 291  Q
    |||||| |||| | ||| ||||||||||| ||||||||||||||| ||||||||    
T  142605 cgtcccacccgaggcgagagtgaatttgtttagggctttttgctttatgtattt 142552  T

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Target: scaffold0014 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 183453 - 183384
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgcttcatgtat-ttccattattaataaaa 306  Q
    ||||||||||  |||||||||||| || | ||||||||||||||||| | || |||||| ||||||||||    
T  183453 cgtcccgcccaagacgaaagtgaacttatttagggctttttgcttcaggcatgttccatcattaataaaa 183384  T

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Target: scaffold0551 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 9401 - 9357
Alignment:
Q  238 cgtcccgcccgcgacgaaagtgaatttgtgtagggctttttgctt 282  Q
    ||||||||||| |||||||||||| |  |||||||||||||||||    
T  9401 cgtcccgcccgagacgaaagtgaactcatgtagggctttttgctt 9357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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