View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13982_low_13 (Length: 491)
Name: NF13982_low_13
Description: NF13982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13982_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Original strand, 55980144 - 55980608
Alignment:
| Q |
18 |
aatggttcaatggaaaagatgatgagagattcattgggtgaatgtgagagagttcctgctagaggtgagacnnnnnnntgtgtggggtctattgaggata |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
55980144 |
aatgattcaatggaaaagatgatgagagattcattgggtgaatgtgagagagttcctgctagaggtgagacaaaaaaatgtgtggggtctattgaggata |
55980243 |
T |
|
| Q |
118 |
tgatcgactttgcagcttcggttttgggtcgaaatgttgtagttcggactactgagaatgtaaatgggtcgaagaaggatgttatggtgggtcatgttag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
55980244 |
tgatcgactttgcagcttcggttttgggtcgaaatgttgtggttcggactactgagaatgtaaatgggtcgaagaaggatcttatggtgggtcatgttag |
55980343 |
T |
|
| Q |
218 |
tgggattaat---ggtgggaaagtgacccgaactgtttcgtgtcatcagagcttgtttccgtatttgctttattattgtcactcggttcctaaggttagg |
314 |
Q |
| |
|
|||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55980344 |
tgggattaataatggtggaaaaatgacccgaactgtttcgtgtcatcagagcttgtttcagtatttgctttattattgtcactcggttcctaaggttagg |
55980443 |
T |
|
| Q |
315 |
gtttatcaagcagagctacttgacccgaaaactaaggataaaattaatcaaggtgttgctgtttgtcatttggatacatcagattggagtcctactcatg |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55980444 |
gtttatcaagcagagctacttgacccgaaaattaaggataaaattaatcaaggtgttgctgtttgtcatttggatacatcagattggagtcctactcatg |
55980543 |
T |
|
| Q |
415 |
gtgcttttgtgtctcttgggtcgggtccgggacaaattgaggtatgtcactggatttttgagaat |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55980544 |
gtgcttttgtgtctcttgggtcgggtccgggacaaattgaggtatgtcactggatttttgagaat |
55980608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 479
Target Start/End: Original strand, 14866237 - 14866698
Alignment:
| Q |
18 |
aatggttcaatggaaaagatgatgagagattcattgggtgaatgtgagagagttcctgctagaggtgagacnnnnnnntgtgtggggtctattgaggata |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| ||||||||| ||||| |||||||||||||||| |
|
|
| T |
14866237 |
aatggttcaatggaaaagatgatgagggattcattgggtgattgtgagagagttccggctaaaggtgagacaaaaagatgtgttgggtctattgaggata |
14866336 |
T |
|
| Q |
118 |
tgatcgactttgcagcttcggttttgggtcgaaatgttgtagttcggactactgagaatgtaaatgggtcgaagaaggatgttatggtgggtcatgttag |
217 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14866337 |
tgatcgactttgcaacttcggttttgggtcgaaatgtggtggttcggactactgagaatgtaaatgggtcgaagaaggatgttatggtgggtcgggttaa |
14866436 |
T |
|
| Q |
218 |
tgggattaatggtgggaaagtgacccgaactgtttcgtgtcatcagagcttgtttccgtatttgctttattattgtcactcggttcctaaggttagggtt |
317 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14866437 |
tgggattaatggcgggaaagtgacccggtctgtttcgtgtcatcagagtttgtttccgtatttgctttattattgtcactcggttcctaaggttcgggtt |
14866536 |
T |
|
| Q |
318 |
tatcaagcagagctacttgacccgaaaactaaggataaaattaatcaaggtgttgctgtttgtcatttggatacatcagattggagtcctactcatggtg |
417 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||| ||||| || |||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
14866537 |
tatcaagcggagctacttgacccgaagagtaaagataagatcaatcaaggggttgctgtttgtcatttggatacttctgattggagtccaactcatggtg |
14866636 |
T |
|
| Q |
418 |
cttttgtgtctcttgggtcgggtccgggacaaattgaggtatgtcactggatttttgagaat |
479 |
Q |
| |
|
||||| |||||||||||||||||||||| | |||||||| ||||| ||||||||||||||| |
|
|
| T |
14866637 |
cttttatgtctcttgggtcgggtccgggtcggattgaggtttgtcattggatttttgagaat |
14866698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 96 - 304
Target Start/End: Complemental strand, 27065723 - 27065515
Alignment:
| Q |
96 |
tgtgtggggtctattgaggatatgatcgactttgcagcttcggttttgggtcgaaatgttgtagttcggactactgagaatgtaaatgggtcgaagaagg |
195 |
Q |
| |
|
|||||||| ||| ||||||||||||| || |||||| |||| |||||||||| | |||| |||||| | |||||||||||||||||| || |||| |
|
|
| T |
27065723 |
tgtgtgggttctcttgaggatatgattgattttgcaacttctgttttgggtcacagtgttactgttcggtccactgagaatgtaaatggggcgggcaagg |
27065624 |
T |
|
| Q |
196 |
atgttatggtgggtcatgttagtgggattaatggtgggaaagtgacccgaactgtttcgtgtcatcagagcttgtttccgtatttgctttattattgtca |
295 |
Q |
| |
|
|||| ||||||||| | |||| ||||| |||||||| ||||| || | |||| |||||||| ||||| |||||||| |||||| | || || ||||| |
|
|
| T |
27065623 |
atgtcatggtgggtaaagttaaggggataaatggtggaaaagttactgaatctgtatcgtgtcaccagagtttgtttccttatttgttatactactgtca |
27065524 |
T |
|
| Q |
296 |
ctcggttcc |
304 |
Q |
| |
|
||||||||| |
|
|
| T |
27065523 |
ctcggttcc |
27065515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 479
Target Start/End: Complemental strand, 27079269 - 27079057
Alignment:
| Q |
267 |
ttgtttccgtatttgctttattattgtcactcggttcctaaggttagggtttatcaagcagagctacttgacccgaaaactaaggataaaattaatcaag |
366 |
Q |
| |
|
|||||||| |||||||| || ||||| ||||||||||| |||||| | |||||| ||||||| || | || || | |||||| || || ||||| | |
|
|
| T |
27079269 |
ttgtttccttatttgctatactattgccactcggttccaaaggttcgtgtttatgaagcagatcttttagatcctgagtctaaggtgaagataaatcatg |
27079170 |
T |
|
| Q |
367 |
gtgttgctgtttgtcatttggatacatcagattggagtcctactcatggtgcttttgtgtctcttgggtcgggtccgggacaaattgaggtatgtcactg |
466 |
Q |
| |
|
|||||||| ||||||| || |||||| | | |||||| || || || ||||| || || |||||||||| |||||||| | ||||| || ||||| || |
|
|
| T |
27079169 |
gtgttgctatttgtcacttagatacaactgcttggagcccaacacacggtgcattcatggctcttgggtctggtccgggtaagattgaagtgtgtcattg |
27079070 |
T |
|
| Q |
467 |
gatttttgagaat |
479 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
27079069 |
gatctttgagaat |
27079057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 235
Target Start/End: Complemental strand, 27053268 - 27053142
Alignment:
| Q |
109 |
ttgaggatatgatcgactttgcagcttcggttttgggtcgaaatgttgtagttcggactactgagaatgtaaatgggtcgaagaaggatgttatggtggg |
208 |
Q |
| |
|
||||||| ||||| ||||||||| |||| |||||||| | ||||| |||||| | ||||||||||||||||||||||| || |||||||||| || |
|
|
| T |
27053268 |
ttgaggacatgattgactttgcaacttctattttgggtagcaatgtgacggttcggtccactgagaatgtaaatgggtcgaacaacaatgttatggtagg |
27053169 |
T |
|
| Q |
209 |
tcatgttagtgggattaatggtgggaa |
235 |
Q |
| |
|
||| || | | ||| ||||||||||| |
|
|
| T |
27053168 |
tcaagtaaaggagataaatggtgggaa |
27053142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 479
Target Start/End: Complemental strand, 27053017 - 27052898
Alignment:
| Q |
360 |
aatcaaggtgttgctgtttgtcatttggatacatcagattggagtcctactcatggtgcttttgtgtctcttgggtcgggtccgggacaaattgaggtat |
459 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||| | | ||||||||| ||||||||||| || || ||||||||| ||||| || || ||||| || | |
|
|
| T |
27053017 |
aatcatggtgttgcgatctgtcacttggatacaactgcttggagtcccactcatggtgcattcatgactcttgggttcggtcctggtcagattgaagtgt |
27052918 |
T |
|
| Q |
460 |
gtcactggatttttgagaat |
479 |
Q |
| |
|
|||| ||||| ||||||||| |
|
|
| T |
27052917 |
gtcattggatatttgagaat |
27052898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University