View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13982_low_18 (Length: 354)

Name: NF13982_low_18
Description: NF13982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13982_low_18
NF13982_low_18
[»] chr4 (13 HSPs)
chr4 (7-341)||(21516081-21516415)
chr4 (79-247)||(24629825-24629994)
chr4 (154-211)||(49358931-49358988)
chr4 (154-202)||(7780877-7780925)
chr4 (154-202)||(8104431-8104479)
chr4 (154-202)||(13594658-13594706)
chr4 (154-202)||(16405896-16405944)
chr4 (154-202)||(17457405-17457453)
chr4 (154-202)||(27590855-27590903)
chr4 (154-202)||(30238779-30238827)
chr4 (154-202)||(37355973-37356021)
chr4 (154-202)||(37367939-37367987)
chr4 (154-202)||(41373537-41373585)
[»] chr5 (13 HSPs)
chr5 (18-267)||(17346651-17346901)
chr5 (7-207)||(40153756-40153948)
chr5 (154-201)||(37335697-37335744)
chr5 (154-202)||(42747634-42747682)
chr5 (153-202)||(22360513-22360562)
chr5 (154-202)||(2958409-2958457)
chr5 (154-202)||(2966878-2966926)
chr5 (154-202)||(4974113-4974161)
chr5 (154-202)||(5876768-5876816)
chr5 (154-202)||(25894273-25894321)
chr5 (154-202)||(29981009-29981057)
chr5 (154-202)||(34356912-34356960)
chr5 (154-202)||(34358703-34358751)
[»] chr6 (14 HSPs)
chr6 (83-263)||(14759171-14759351)
chr6 (158-263)||(20382770-20382874)
chr6 (154-202)||(1428047-1428095)
chr6 (154-202)||(4019859-4019907)
chr6 (154-202)||(4026285-4026333)
chr6 (154-202)||(4718164-4718212)
chr6 (154-202)||(7062140-7062188)
chr6 (154-202)||(7069326-7069374)
chr6 (154-202)||(21262197-21262245)
chr6 (154-202)||(22870789-22870837)
chr6 (154-202)||(31128914-31128962)
chr6 (154-202)||(31548445-31548493)
chr6 (154-202)||(34655801-34655849)
chr6 (154-202)||(34711180-34711228)
[»] chr2 (16 HSPs)
chr2 (128-202)||(34744914-34744989)
chr2 (154-211)||(13163366-13163423)
chr2 (154-202)||(2021072-2021120)
chr2 (154-202)||(2158162-2158210)
chr2 (154-202)||(2164578-2164626)
chr2 (154-202)||(12951346-12951394)
chr2 (154-202)||(13901579-13901627)
chr2 (154-202)||(15853100-15853148)
chr2 (154-202)||(16816954-16817002)
chr2 (154-202)||(16856111-16856159)
chr2 (154-202)||(21067580-21067628)
chr2 (154-202)||(29485445-29485493)
chr2 (154-202)||(36781808-36781856)
chr2 (154-202)||(42930996-42931044)
chr2 (154-202)||(43268410-43268458)
chr2 (154-202)||(45012533-45012581)
[»] chr3 (10 HSPs)
chr3 (154-202)||(6817185-6817233)
chr3 (154-202)||(10940928-10940976)
chr3 (297-339)||(48251215-48251257)
chr3 (154-211)||(2786253-2786310)
chr3 (154-202)||(4311110-4311158)
chr3 (154-202)||(9570171-9570219)
chr3 (154-202)||(9576673-9576721)
chr3 (154-202)||(25893776-25893824)
chr3 (154-202)||(27501591-27501639)
chr3 (154-202)||(43995626-43995674)
[»] chr1 (16 HSPs)
chr1 (154-202)||(11912886-11912934)
chr1 (165-205)||(30660400-30660440)
chr1 (154-202)||(1115606-1115654)
chr1 (154-202)||(1175156-1175204)
chr1 (154-202)||(4600079-4600127)
chr1 (154-202)||(23761960-23762008)
chr1 (154-202)||(26622021-26622069)
chr1 (6-62)||(27048528-27048583)
chr1 (154-202)||(28996559-28996607)
chr1 (154-202)||(29002275-29002323)
chr1 (154-202)||(32798274-32798322)
chr1 (154-202)||(39052962-39053010)
chr1 (154-202)||(39059334-39059382)
chr1 (154-202)||(41305143-41305191)
chr1 (154-202)||(45016331-45016379)
chr1 (154-202)||(45023085-45023133)
[»] chr7 (21 HSPs)
chr7 (9-148)||(26840699-26840840)
chr7 (20-61)||(41454675-41454716)
chr7 (20-61)||(48455804-48455845)
chr7 (154-202)||(1379497-1379545)
chr7 (154-202)||(2447196-2447244)
chr7 (154-202)||(5049536-5049584)
chr7 (154-202)||(6020488-6020536)
chr7 (154-202)||(6795988-6796036)
chr7 (154-202)||(8142068-8142116)
chr7 (154-202)||(8185016-8185064)
chr7 (154-202)||(8192576-8192624)
chr7 (154-202)||(9642540-9642588)
chr7 (154-202)||(14288265-14288313)
chr7 (154-202)||(19090359-19090407)
chr7 (154-202)||(22853830-22853878)
chr7 (154-202)||(23612939-23612987)
chr7 (154-202)||(26602462-26602510)
chr7 (125-177)||(28442975-28443027)
chr7 (154-202)||(36876095-36876143)
chr7 (154-202)||(48346720-48346768)
chr7 (154-202)||(48353104-48353152)
[»] chr8 (11 HSPs)
chr8 (20-61)||(5063765-5063806)
chr8 (20-61)||(38657663-38657704)
chr8 (154-202)||(6464200-6464248)
chr8 (154-202)||(7311899-7311947)
chr8 (154-202)||(8012944-8012992)
chr8 (154-202)||(15012938-15012986)
chr8 (154-202)||(26250216-26250264)
chr8 (154-202)||(36005106-36005154)
chr8 (154-202)||(36021422-36021470)
chr8 (154-202)||(36076517-36076565)
chr8 (154-202)||(36425354-36425402)
[»] scaffold0510 (1 HSPs)
scaffold0510 (154-202)||(8504-8552)
[»] scaffold0053 (1 HSPs)
scaffold0053 (154-202)||(50240-50288)
[»] scaffold0043 (1 HSPs)
scaffold0043 (154-202)||(4629-4677)


Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 7 - 341
Target Start/End: Original strand, 21516081 - 21516415
Alignment:
Q  7 gattattctaagtctagattctaaaagtatcttccaataacaattcaaatccataatttaagcataagtaaacaaggataacatcaatattcaaaaacaa 106  Q
    |||||| ||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  21516081 gattatcctaagtctagattctaaaagtatttcccaataacaattcaaatctataatttaagcataagaaaacaaggataacatcaatattcaaaaacaa 21516180  T
Q  107 ctaaaatcatatattgttataatcaaaaggaatacatactaattttgtcaattacatctaatctcaacaaatgagatttagctactcattctcatgataa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21516181 ctaaaatcatatattgttataatcaaaaggaatacatactaattttgtcaattacatctaatcttaacaaatgagatttagctactcattctcatgataa 21516280  T
Q  207 ctttgaataattgagaagaaaggaaaggaattgacatcaagttgatgatttctcaataaatatctacatttatatctattaattaaagagtaattaaaat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21516281 ctttgaataattgagaagaaaggaaaggaattgacatcaagttgatgatttctcaataaatatctacatttgtatctattaattaaagagtaattaaaat 21516380  T
Q  307 atccatttattttttccatcgatattcattaaaac 341  Q
    || ||||||||||||||||||||||||||||||||    
T  21516381 attcatttattttttccatcgatattcattaaaac 21516415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 79 - 247
Target Start/End: Complemental strand, 24629994 - 24629825
Alignment:
Q  79 caaggataacatcaatattcaaaaacaactaaaatcatatattgttataatcaaaaggaatacatactaattttgtcaattacatctaatctcaac-aaa 177  Q
    |||||||||||||||||||||  || ||||||||||||||| | ||| ||| ||||| ||||||||||| | | || |||||||| ||||| |||| |||    
T  24629994 caaggataacatcaatattcatgaataactaaaatcatataatattacaatgaaaagaaatacatactagtatggttaattacatttaatcccaacaaaa 24629895  T
Q  178 tgagatttagctactcattctcatgataactttgaataattgagaagaaaggaaaggaattgacatcaag 247  Q
    | | ||||| ||||||||| |||||||| ||||| | |  ||||||||||  | | ||||||||||||||    
T  24629894 taaaatttaactactcattgtcatgatagctttgcaaagatgagaagaaaatagatgaattgacatcaag 24629825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 49358988 - 49358931
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatgataactttg 211  Q
    |||| ||| ||||||| ||||||  |||||||||||||||||| ||||| ||||||||    
T  49358988 tcaagtacctctaatcccaacaatggagatttagctactcattttcatggtaactttg 49358931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 7780877 - 7780925
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  7780877 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 7780925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 8104431 - 8104479
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  8104431 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 8104479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 13594658 - 13594706
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  13594658 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 13594706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 16405896 - 16405944
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  16405896 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 16405944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 17457405 - 17457453
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  17457405 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 17457453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 27590855 - 27590903
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  27590855 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 27590903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 30238779 - 30238827
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  30238779 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 30238827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 37356021 - 37355973
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  37356021 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 37355973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 37367987 - 37367939
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  37367987 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 37367939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 41373537 - 41373585
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  41373537 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 41373585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 17346651 - 17346901
Alignment:
Q  18 gtctagattctaaaagtatcttccaataacaattcaaatccataatttaagcataagtaaacaaggataacatcaatattcaaaaacaactaaaatcata 117  Q
    |||||||||| ||||| || || ||||||||||||||||||| || | ||||||||| |||||||||||||||||||||| | |||||||||||||||||    
T  17346651 gtctagattcaaaaagcatttttcaataacaattcaaatccacaaatcaagcataagaaaacaaggataacatcaatattaataaacaactaaaatcata 17346750  T
Q  118 tattgttataatcaaaaggaatacata-ctaattttgtcaattacatctaatctcaacaaatgagatttagctactcattctcatgataactttgaataa 216  Q
    ||||| ||  ||||||   |||||||| | | |||||| |||||||| ||||| |||||||||||||||||||||||||| ||||| || | ||| | ||    
T  17346751 tattgctaagatcaaagaaaatacatatcgagttttgttaattacatttaatcccaacaaatgagatttagctactcattgtcatggtagccttgcaaaa 17346850  T
Q  217 ttgagaagaaaggaaaggaattgacatcaagttgatgatttctcaataaat 267  Q
     |||||||||| ||  | |||  |||||||| |  ||||||||||||||||    
T  17346851 atgagaagaaaagagtgaaatacacatcaagattgtgatttctcaataaat 17346901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 207
Target Start/End: Original strand, 40153756 - 40153948
Alignment:
Q  7 gattattctaagtctagattctaaaagta--tcttccaataacaattcaaatccataatttaagcataagtaaacaaggataacatcaatattcaaaaac 104  Q
    |||||| |||||||||||||| ||| |||  ||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40153756 gattatcctaagtctagattcaaaaggtaattcttt-aataacaattcaaatccataatttaagcataagaaaacaaggataacatcaatattcaaaaac 40153854  T
Q  105 aactaaaatcatatattgttataatcaaaaggaatacatactaattttgtcaattacatctaatctcaacaaatgagatttagctactcattctcatgat 204  Q
    |         |||||||| |||||| |||||||||||||||| |||| |||||||| || ||||| |||||||||||||||| ||||||||| ||||| |    
T  40153855 a---------atatattgctataataaaaaggaatacatactgatttggtcaattatatttaatcccaacaaatgagatttaactactcattgtcatggt 40153945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 37335697 - 37335744
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcat 201  Q
    |||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  37335697 tcaagtacatctaatcccaacaaatgagatttagctactcattgtcat 37335744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 42747634 - 42747682
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| ||||||||||||||||||||||||    
T  42747634 tcaagtacgtctaatcccaacaaaggagatttagctactcattctcatg 42747682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 22360513 - 22360562
Alignment:
Q  153 gtcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    ||||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  22360513 gtcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 22360562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 2958409 - 2958457
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  2958409 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 2958457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 2966878 - 2966926
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  2966878 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 2966926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 4974113 - 4974161
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  4974113 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 4974161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 5876768 - 5876816
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  5876768 tcaagtacctctaatcccaacaaaggagatttagctactcattatcatg 5876816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 25894321 - 25894273
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  25894321 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 25894273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 29981009 - 29981057
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  29981009 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 29981057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 34356960 - 34356912
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  34356960 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 34356912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 34358751 - 34358703
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  34358751 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 34358703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 83 - 263
Target Start/End: Complemental strand, 14759351 - 14759171
Alignment:
Q  83 gataacatcaatattcaaaaacaactaaaatcatatattgttataatcaaaaggaatacatactaattttg-tcaattacatctaatctcaacaaatgag 181  Q
    ||||||||||||||| || |||||||| |||||||||||  ||  |||| || ||||||||| | | |||| |||| ||| | ||||| |||||||||||    
T  14759351 gataacatcaatattaaagaacaactagaatcatatattactaagatcataaagaatacatattgagtttgatcaaatacctttaatcccaacaaatgag 14759252  T
Q  182 atttagctactcattctcatgataactttgaataattgagaagaaaggaaaggaattgacatcaagttgatgatttctcaat 263  Q
    ||||| ||||||||| ||||| || | ||| | ||||| ||||||| | | |||||  | |||||| || ||||||||||||    
T  14759251 atttaactactcattatcatggtagccttgcaaaattg-gaagaaatggatggaatgcatatcaagatgttgatttctcaat 14759171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 263
Target Start/End: Complemental strand, 20382874 - 20382770
Alignment:
Q  158 ttacatctaatctcaacaaatgagatttagctactcattctcatgataactttgaataattgagaagaaaggaaaggaattgacatcaagttgatgattt 257  Q
    ||||| |||||| |||||||||||||||||||||||||| ||||| || | ||| | ||||| ||||||| ||  |||||  | |||||| |||||||||    
T  20382874 ttacacctaatcccaacaaatgagatttagctactcattatcatggtagccttgcaaaattg-gaagaaatgagtggaatacatatcaagatgatgattt 20382776  T
Q  258 ctcaat 263  Q
    ||||||    
T  20382775 ctcaat 20382770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 1428095 - 1428047
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  1428095 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 1428047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 4019907 - 4019859
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  4019907 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 4019859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 4026333 - 4026285
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  4026333 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 4026285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 4718212 - 4718164
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  4718212 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 4718164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 7062188 - 7062140
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  7062188 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 7062140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 7069374 - 7069326
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  7069374 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 7069326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 21262245 - 21262197
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  21262245 tcaagtacctctaatcccaacaaaggagatttagctactcattttcatg 21262197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 22870789 - 22870837
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||| |||||||||||    
T  22870789 tcaagtacctctaatcccaacaaaggagatttagctaatcattctcatg 22870837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 31128962 - 31128914
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  31128962 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 31128914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 31548445 - 31548493
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  31548445 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 31548493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 34655801 - 34655849
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  34655801 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 34655849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 34711228 - 34711180
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  34711228 tcaaatacctctaatcccaacaaaggagatttagctactcattgtcatg 34711180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 34744989 - 34744914
Alignment:
Q  128 atcaaaaggaatacatactaattttg-tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||||||| |||||||||||   ||| |||| ||||||||||| ||||||| |||||||||||||||||| |||||    
T  34744989 atcaaaagaaatacatactatgcttgatcaagtacatctaatcccaacaaaggagatttagctactcattgtcatg 34744914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 13163366 - 13163423
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatgataactttg 211  Q
    |||| ||| ||||||| ||||||  |||||||||||||||||| ||||| ||||||||    
T  13163366 tcaagtacctctaatcccaacaatggagatttagctactcattgtcatggtaactttg 13163423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 2021120 - 2021072
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  2021120 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 2021072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 2158162 - 2158210
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  2158162 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 2158210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 2164578 - 2164626
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  2164578 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 2164626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 12951346 - 12951394
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  12951346 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 12951394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 13901627 - 13901579
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  13901627 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 13901579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 15853100 - 15853148
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  15853100 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 15853148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 16817002 - 16816954
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  16817002 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 16816954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 16856159 - 16856111
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  16856159 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 16856111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 21067628 - 21067580
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  21067628 tcaaatacctctaatcccaacaaaggagatttagctactcattgtcatg 21067580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 29485445 - 29485493
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  29485445 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 29485493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 36781856 - 36781808
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  36781856 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 36781808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 42931044 - 42930996
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  42931044 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 42930996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 43268410 - 43268458
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  43268410 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 43268458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 45012533 - 45012581
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  45012533 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 45012581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 6817233 - 6817185
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||||||||||||||| ||| || ||||||||||||||||||| |||||    
T  6817233 tcaattacatctaatcccaaaaagtgagatttagctactcattgtcatg 6817185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 10940976 - 10940928
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| |||||||||||||||||||||||||| |||||    
T  10940976 tcaagtacctctaatcccaacaaatgagatttagctactcattgtcatg 10940928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 48251257 - 48251215
Alignment:
Q  297 taattaaaatatccatttattttttccatcgatattcattaaa 339  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||    
T  48251257 taattaaaatatccatttattttatccatagatatccattaaa 48251215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 2786253 - 2786310
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatgataactttg 211  Q
    |||| ||| ||||||| ||||||  || ||||||||||||||| ||||||||||||||    
T  2786253 tcaagtacctctaatcccaacaatggaaatttagctactcattgtcatgataactttg 2786310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 4311158 - 4311110
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  4311158 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 4311110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 9570219 - 9570171
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  9570219 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 9570171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 9576721 - 9576673
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  9576721 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 9576673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 25893776 - 25893824
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  25893776 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 25893824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 27501639 - 27501591
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  27501639 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 27501591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 43995626 - 43995674
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  43995626 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 43995674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 11912934 - 11912886
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||||||||||| |||||||||||||||||| |||||    
T  11912934 tcaagtacctctaatctcaacaaaggagatttagctactcattgtcatg 11912886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 30660400 - 30660440
Alignment:
Q  165 taatctcaacaaatgagatttagctactcattctcatgata 205  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  30660400 taatcccaacaaaggagatttagctactcattctcatgata 30660440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 1115654 - 1115606
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  1115654 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 1115606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 1175156 - 1175204
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  1175156 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 1175204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 4600079 - 4600127
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  4600079 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 4600127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 23762008 - 23761960
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  23762008 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 23761960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 26622021 - 26622069
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  26622021 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 26622069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 27048528 - 27048583
Alignment:
Q  6 agattattctaagtctagattctaaaagtatcttccaataacaattcaaatccataa 62  Q
    ||||||||||||  |||||||| ||| |||| || ||||||||||||||||||||||    
T  27048528 agattattctaac-ctagattcaaaaggtatttttcaataacaattcaaatccataa 27048583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 28996559 - 28996607
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  28996559 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 28996607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 29002275 - 29002323
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  29002275 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 29002323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 32798274 - 32798322
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  32798274 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 32798322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 39053010 - 39052962
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  39053010 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 39052962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 39059382 - 39059334
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  39059382 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 39059334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 41305191 - 41305143
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  41305191 tcaagtacctctaatcccaacaaaggagatttagctactcattatcatg 41305143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 45016331 - 45016379
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  45016331 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 45016379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 45023085 - 45023133
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  45023085 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 45023133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 26840840 - 26840699
Alignment:
Q  9 ttattctaagtctagattctaaaagtatcttccaataacaattcaaatccataatttaagcataagtaaacaaggataacatcaatattcaaaaacaact 108  Q
    |||| |||| ||||||||| ||| |||| |  |||||||||||||||| ||||| || |    | | || |||||||||||| ||||||||  || ||||    
T  26840840 ttatcctaaatctagattcaaaaggtatttctcaataacaattcaaattcataaattgaattaatgaaagcaaggataacataaatattcatgaataact 26840741  T
Q  109 aaaatcatatat--tgttataatcaaaaggaatacatactaa 148  Q
    | ||| ||||||  ||| ||||||||||| ||||||||||||    
T  26840740 agaataatatataatgtcataatcaaaagaaatacatactaa 26840699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 41454716 - 41454675
Alignment:
Q  20 ctagattctaaaagtatcttccaataacaattcaaatccata 61  Q
    |||||||| |||||||| || |||||||||||||||||||||    
T  41454716 ctagattcaaaaagtatttttcaataacaattcaaatccata 41454675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 48455804 - 48455845
Alignment:
Q  20 ctagattctaaaagtatcttccaataacaattcaaatccata 61  Q
    |||||||| ||| ||||||| |||||||||||||||||||||    
T  48455804 ctagattcaaaaggtatctttcaataacaattcaaatccata 48455845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 1379497 - 1379545
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  1379497 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 1379545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 2447196 - 2447244
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  2447196 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 2447244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 5049584 - 5049536
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  5049584 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 5049536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 6020536 - 6020488
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  6020536 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 6020488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 6795988 - 6796036
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  6795988 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 6796036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 8142116 - 8142068
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  8142116 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 8142068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 8185064 - 8185016
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  8185064 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 8185016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 8192624 - 8192576
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  8192624 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 8192576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 9642588 - 9642540
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  9642588 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 9642540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 14288265 - 14288313
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  14288265 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 14288313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 19090359 - 19090407
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  19090359 tcaagtacctctaatcccaacaaaagagatttagctactcattgtcatg 19090407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 22853878 - 22853830
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  22853878 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 22853830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 23612939 - 23612987
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  23612939 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 23612987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 26602462 - 26602510
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  26602462 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 26602510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 28442975 - 28443027
Alignment:
Q  125 ataatcaaaaggaatacatactaattttgtcaattacatctaatctcaacaaa 177  Q
    |||||||||||||||||||||||||   ||  ||||||||||||| |||||||    
T  28442975 ataatcaaaaggaatacatactaatagagttgattacatctaatcccaacaaa 28443027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 36876095 - 36876143
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  36876095 tcaagtacctctaatcccaacaaaagagatttagctactcattgtcatg 36876143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 48346768 - 48346720
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  48346768 tcaagtacctctaatcccaacaaaggagatttagctactcattatcatg 48346720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 48353152 - 48353104
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  48353152 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 48353104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 5063806 - 5063765
Alignment:
Q  20 ctagattctaaaagtatcttccaataacaattcaaatccata 61  Q
    |||||||| ||| ||||||| |||||||||||||||||||||    
T  5063806 ctagattcaaaaggtatctttcaataacaattcaaatccata 5063765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 38657663 - 38657704
Alignment:
Q  20 ctagattctaaaagtatcttccaataacaattcaaatccata 61  Q
    |||||||| |||||||| || |||||||||||||||||||||    
T  38657663 ctagattcaaaaagtatttttcaataacaattcaaatccata 38657704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 6464248 - 6464200
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  6464248 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 6464200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 7311899 - 7311947
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  7311899 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 7311947  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 8012992 - 8012944
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  8012992 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 8012944  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 15012938 - 15012986
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  15012938 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 15012986  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 26250264 - 26250216
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  26250264 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 26250216  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 36005154 - 36005106
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  36005154 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 36005106  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 36021470 - 36021422
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  36021470 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 36021422  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 36076517 - 36076565
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  36076517 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 36076565  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 36425402 - 36425354
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  36425402 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 36425354  T

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Target: scaffold0510 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 8552 - 8504
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  8552 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 8504  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 50240 - 50288
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  50240 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 50288  T

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Target: scaffold0043 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 4677 - 4629
Alignment:
Q  154 tcaattacatctaatctcaacaaatgagatttagctactcattctcatg 202  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||| |||||    
T  4677 tcaagtacctctaatcccaacaaaggagatttagctactcattgtcatg 4629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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