View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13982_low_21 (Length: 322)
Name: NF13982_low_21
Description: NF13982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13982_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 52475833 - 52476124
Alignment:
| Q |
18 |
cagatgatgataaacccttctcaataaggtaccataccatttcctacatgctttaaaattaatgttactataaatatgtatagacttatgttttcaaaaa |
117 |
Q |
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| T |
52475833 |
cagatgatgataaacccttctcaataaggtacc-----atttcctacatgctttaaaattaatgttactataaatatgtatagacttatgttttcaaaaa |
52475927 |
T |
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| Q |
118 |
caaggttttgttgttattttattttcactttcaaattatatatgtcattattgcatgttctatatttggatattatctcttgatttaatgtccctcgcac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
52475928 |
caaggttttgttgttattttattttcactttcaaattatatatgtcattattgcatgttctatatttggata-tatctcttgatttaatgtctatcgcac |
52476026 |
T |
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| Q |
218 |
ttctaagatatttagcacatgttcgttgtgccttatttacaatttttgaacgcaactgaagctgattaggattattattttttgttcaattccctttg |
315 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52476027 |
ttctaaggtatttagcacatgttcgttgtgccttatttacaatttttgaacgcaactgaaactgattaggattattattttttgttcaattccctttg |
52476124 |
T |
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