View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13982_low_24 (Length: 305)
Name: NF13982_low_24
Description: NF13982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13982_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 33750804 - 33750531
Alignment:
| Q |
18 |
atccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatcccatatttgtctcactttga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33750804 |
atccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatccaatatttgtctcactttgc |
33750705 |
T |
|
| Q |
118 |
atttcttgattcatattctcgttctcattctcat------cttttacattctctaaatcaggagcaaccacttctgactgcttaagtgaatcatcaacca |
211 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750704 |
atttcttgattcatattctcgttctcattctcattctcatcttttacattctctaaatcaggagcaaccacttctgactgcttaagtgaatcatcaacca |
33750605 |
T |
|
| Q |
212 |
ttggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctcc |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750604 |
ttggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctcc |
33750531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 33735992 - 33735871
Alignment:
| Q |
18 |
atccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatcccatatttgtctcactttga |
117 |
Q |
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||||||||||||||| |||||||||||||||| ||| || | ||||||||||||||||||| | ||||| || ||||||||||| |||||||| |||| |
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| T |
33735992 |
atccataaacctcattagttgttgaaaatcagcttctccgatactatcccaaaaatcacaattcttattactctcaaatcccatagttgtctcaatttgt |
33735893 |
T |
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| Q |
118 |
atttcttgattcatattctcgt |
139 |
Q |
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|||||||||||||||||||||| |
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| T |
33735892 |
atttcttgattcatattctcgt |
33735871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 190 - 285
Target Start/End: Complemental strand, 33719153 - 33719058
Alignment:
| Q |
190 |
tgcttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctcc |
285 |
Q |
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| T |
33719153 |
tgcttaagggattcatcaacaagtggaaaattgagctttgccctcggcccacgaaactcgatggcggcattgtcataagctctggcagcttcctcc |
33719058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 33735824 - 33735731
Alignment:
| Q |
192 |
cttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctcc |
285 |
Q |
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|||||| || |||||||| | |||||||||||| |||||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||| |
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| T |
33735824 |
cttaagcgattcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagctctggcagcttcctcc |
33735731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 33719321 - 33719203
Alignment:
| Q |
19 |
tccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatcccatatttgtctcactttgaa |
118 |
Q |
| |
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||||||||| |||| | |||||||||||||| ||| |||| |||||| |||||||||||||| |||||||| |||| ||| | |||| ||| |||| | |
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| T |
33719321 |
tccataaacttcataaattgttgaaaatcaggttcaccaatgctatccaaaaaatcacaatccttattattctcaaaccccgtcattgtttcaatttgca |
33719222 |
T |
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| Q |
119 |
tttcttgattcatattctc |
137 |
Q |
| |
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||||||||||||||||||| |
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| T |
33719221 |
tttcttgattcatattctc |
33719203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 191 - 285
Target Start/End: Complemental strand, 33721171 - 33721077
Alignment:
| Q |
191 |
gcttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctcc |
285 |
Q |
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||||||| || |||||||| | ||||||||| || ||||| |||||||| ||||||||||| || |||||||| |||||||| |||||||||||| |
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| T |
33721171 |
gcttaagagattcatcaacaagtggaaaattaagcttggctctcggcccgcggaactcgatagcggcattgtcgtaagctctagcagcttcctcc |
33721077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 33721326 - 33721214
Alignment:
| Q |
18 |
atccataaacctcatcagttgttgaaaatcag---tttccccaagcctatcccaaaaatcacaatc---catattattcccaaatcccatatttgtctca |
111 |
Q |
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||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| || | ||||||||||||||||||| |||||||| |
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| T |
33721326 |
atccataaacctcataagttgttgaaaatcagcttcttccccaatactatcccaaaaatcacattcagtcgtattattcccaaatcccatcgttgtctca |
33721227 |
T |
|
| Q |
112 |
ctttgaatttctt |
124 |
Q |
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|||| ||||||| |
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| T |
33721226 |
atttgcatttctt |
33721214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 32575146 - 32575066
Alignment:
| Q |
18 |
atccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatcc |
98 |
Q |
| |
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||||||||||||||| | ||| |||| ||| |||||||| | |||||||||| ||||||||||||| ||| | |||||| |
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| T |
32575146 |
atccataaacctcataacttgccgaaattcaccttccccaatcatatcccaaaattcacaatccatatcatttctaaatcc |
32575066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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