View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13982_low_25 (Length: 298)

Name: NF13982_low_25
Description: NF13982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13982_low_25
NF13982_low_25
[»] chr8 (15 HSPs)
chr8 (10-156)||(38613611-38613757)
chr8 (153-283)||(6311097-6311229)
chr8 (155-283)||(7290080-7290211)
chr8 (156-281)||(36979184-36979308)
chr8 (156-281)||(4760242-4760366)
chr8 (156-281)||(30655448-30655572)
chr8 (177-283)||(39784977-39785086)
chr8 (156-262)||(18853356-18853457)
chr8 (156-275)||(18870734-18870849)
chr8 (177-260)||(25328456-25328540)
chr8 (147-281)||(10689309-10689442)
chr8 (192-281)||(33037972-33038063)
chr8 (177-260)||(35745213-35745298)
chr8 (177-251)||(10684452-10684528)
chr8 (154-230)||(19752609-19752683)
[»] chr5 (21 HSPs)
chr5 (155-283)||(1457315-1457446)
chr5 (156-283)||(27444771-27444901)
chr5 (156-283)||(43592080-43592210)
chr5 (156-283)||(43598525-43598655)
chr5 (156-283)||(43604017-43604147)
chr5 (156-283)||(43609509-43609639)
chr5 (156-283)||(27449615-27449745)
chr5 (173-283)||(30631227-30631338)
chr5 (177-283)||(28807729-28807837)
chr5 (177-283)||(15044512-15044618)
chr5 (156-221)||(31180079-31180142)
chr5 (177-260)||(37556802-37556887)
chr5 (177-260)||(37561624-37561709)
chr5 (156-281)||(38191983-38192105)
chr5 (156-281)||(38219208-38219330)
chr5 (177-260)||(2785197-2785282)
chr5 (177-260)||(31397171-31397256)
chr5 (177-260)||(31402028-31402113)
chr5 (195-260)||(33791158-33791223)
chr5 (156-212)||(35387474-35387527)
chr5 (195-260)||(33768021-33768086)
[»] chr4 (11 HSPs)
chr4 (155-283)||(51520257-51520388)
chr4 (177-283)||(9224560-9224668)
chr4 (177-283)||(9229347-9229455)
chr4 (155-283)||(56146865-56146996)
chr4 (177-282)||(3813846-3813954)
chr4 (177-283)||(18855549-18855657)
chr4 (177-281)||(45347973-45348079)
chr4 (177-281)||(45357452-45357558)
chr4 (156-281)||(24741748-24741871)
chr4 (177-283)||(5732486-5732593)
chr4 (156-281)||(29760449-29760572)
[»] scaffold0135 (1 HSPs)
scaffold0135 (177-283)||(35215-35323)
[»] chr7 (17 HSPs)
chr7 (177-283)||(12396735-12396843)
chr7 (177-283)||(12406155-12406263)
chr7 (177-260)||(24024506-24024589)
chr7 (177-283)||(4866553-4866661)
chr7 (177-283)||(31109737-31109844)
chr7 (154-260)||(2057763-2057866)
chr7 (156-281)||(20357713-20357837)
chr7 (177-283)||(19992135-19992243)
chr7 (177-283)||(21812393-21812501)
chr7 (156-281)||(1533608-1533730)
chr7 (156-281)||(21645818-21645940)
chr7 (156-231)||(2479148-2479221)
chr7 (152-231)||(47263485-47263562)
chr7 (177-251)||(16879894-16879970)
chr7 (177-251)||(16884750-16884826)
chr7 (177-251)||(24261511-24261587)
chr7 (177-251)||(24266390-24266466)
[»] chr6 (15 HSPs)
chr6 (177-283)||(11856795-11856903)
chr6 (177-283)||(14737730-14737838)
chr6 (177-283)||(14742589-14742697)
chr6 (177-283)||(22010850-22010958)
chr6 (177-283)||(6438324-6438431)
chr6 (177-283)||(28184325-28184436)
chr6 (177-260)||(28155749-28155832)
chr6 (156-281)||(5674934-5675057)
chr6 (156-281)||(30125960-30126084)
chr6 (177-260)||(6005239-6005324)
chr6 (195-260)||(5343322-5343387)
chr6 (195-260)||(33330625-33330690)
chr6 (177-260)||(33336122-33336207)
chr6 (177-260)||(16838566-16838651)
chr6 (156-231)||(31936398-31936470)
[»] chr3 (14 HSPs)
chr3 (177-283)||(22173348-22173456)
chr3 (154-281)||(7167049-7167174)
chr3 (177-283)||(18656256-18656363)
chr3 (156-281)||(2671752-2671876)
chr3 (156-259)||(40372986-40373085)
chr3 (155-281)||(8477170-8477295)
chr3 (156-283)||(28504020-28504145)
chr3 (156-260)||(8739254-8739354)
chr3 (156-260)||(9091492-9091592)
chr3 (177-260)||(8512037-8512122)
chr3 (177-260)||(8516917-8517002)
chr3 (177-260)||(2677266-2677351)
chr3 (177-260)||(2673110-2673195)
chr3 (177-260)||(10207755-10207840)
[»] chr2 (10 HSPs)
chr2 (177-283)||(44312777-44312885)
chr2 (154-281)||(11099093-11099219)
chr2 (177-283)||(32246607-32246716)
chr2 (177-283)||(39812141-39812250)
chr2 (156-281)||(14291295-14291419)
chr2 (156-281)||(9296567-9296691)
chr2 (177-260)||(19344243-19344327)
chr2 (177-260)||(19349101-19349185)
chr2 (156-281)||(25403443-25403565)
chr2 (156-281)||(25398305-25398427)
[»] chr1 (10 HSPs)
chr1 (177-283)||(25445244-25445352)
chr1 (177-283)||(39445322-39445430)
chr1 (177-283)||(44024027-44024135)
chr1 (177-255)||(41386571-41386650)
chr1 (177-260)||(41398060-41398144)
chr1 (177-283)||(1055166-1055274)
chr1 (195-260)||(43988644-43988709)
chr1 (192-253)||(24787564-24787624)
chr1 (156-281)||(24202932-24203054)
chr1 (156-212)||(19359079-19359132)
[»] scaffold0464 (1 HSPs)
scaffold0464 (177-283)||(185-293)
[»] scaffold0127 (1 HSPs)
scaffold0127 (177-255)||(34132-34211)
[»] scaffold0355 (2 HSPs)
scaffold0355 (177-260)||(9818-9902)
scaffold0355 (177-283)||(40-143)
[»] scaffold0978 (1 HSPs)
scaffold0978 (155-279)||(404-528)
[»] scaffold0479 (1 HSPs)
scaffold0479 (177-238)||(13171-13233)
[»] scaffold0197 (2 HSPs)
scaffold0197 (177-260)||(19343-19428)
scaffold0197 (177-251)||(14497-14573)
[»] scaffold0028 (1 HSPs)
scaffold0028 (177-260)||(149134-149219)
[»] scaffold0259 (1 HSPs)
scaffold0259 (177-260)||(2429-2514)
[»] scaffold0188 (1 HSPs)
scaffold0188 (156-281)||(24208-24331)
[»] scaffold0087 (1 HSPs)
scaffold0087 (156-231)||(44174-44247)
[»] scaffold0009 (1 HSPs)
scaffold0009 (177-251)||(182152-182228)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 38613611 - 38613757
Alignment:
Q  10 catcatcatcatctctggtcccaggtttcaaaattatgagtaattttaaacttgatactcattgtaatctccgttttcacctgcagggtcttaaatacat 109  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38613611 catcatcatcttctctggtcccagctttcaaaattatgagtaattttaaacttgatactcattgtaatctccgttttcacctgcagggtcttaaatacat 38613710  T
Q  110 tgcacaaacaccgttgccaaggtttgaatctgctgaattttgcttct 156  Q
    |||||||||||||||||||||||||||||| |||  |||||||||||    
T  38613711 tgcacaaacaccgttgccaaggtttgaatcagctcgattttgcttct 38613757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 153 - 283
Target Start/End: Original strand, 6311097 - 6311229
Alignment:
Q  153 ttctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca 252  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6311097 ttctgttgtgaatccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca 6311196  T
Q  253 aacaaca--aaaccagccctagactagtgtata 283  Q
    |||||||  ||| ||||||||||||||||||||    
T  6311197 aacaacaacaaagcagccctagactagtgtata 6311229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 155 - 283
Target Start/End: Complemental strand, 7290211 - 7290080
Alignment:
Q  155 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa 253  Q
    ||||||||| |||||||  |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||    
T  7290211 ctgttgtgaatccggttccaaactcacaccaatgaaataaacattgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaaacaa 7290112  T
Q  254 acaaca--aaaccagccctagactagtgtata 283  Q
    ||||||  ||| ||||||||||||||||||||    
T  7290111 acaacaacaaagcagccctagactagtgtata 7290080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 156 - 281
Target Start/End: Original strand, 36979184 - 36979308
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 253  Q
    |||||||| ||||||||||||||||||||||||||  ||||| ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||  |    
T  36979184 tgttgtgaatccggttgaaactcacaccaatgaaa--aacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaaca 36979280  T
Q  254 acaacaaaaccagccctagactagtgta 281  Q
    ||||||||| ||||||||||||||||||    
T  36979281 acaacaaaaacagccctagactagtgta 36979308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 156 - 281
Target Start/End: Complemental strand, 4760366 - 4760242
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 253  Q
    |||||||| ||||||||||||||||| ||||||||  ||||| |||||||||||| || ||||||||||||||||||| | ||||||||||||||||  |    
T  4760366 tgttgtgaatccggttgaaactcacatcaatgaaa--aacaaagatgtgtggagctagagatagtggtaatcaatgagca-aaatggtttccaagcaaca 4760270  T
Q  254 acaacaaaaccagccctagactagtgta 281  Q
    ||||||||| ||||||||||||||||||    
T  4760269 acaacaaaaacagccctagactagtgta 4760242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 156 - 281
Target Start/End: Original strand, 30655448 - 30655572
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 253  Q
    |||||||| ||||||||||||||||||||||||||   |||| ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||  |    
T  30655448 tgttgtgaatccggttgaaactcacaccaatgaaa---acaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaaca 30655543  T
Q  254 acaac-aaaaccagccctagactagtgta 281  Q
    ||||| |||| ||||||||||||||||||    
T  30655544 acaacaaaaaacagccctagactagtgta 30655572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 39785086 - 39784977
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctaga 273  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| || ||||  ||| ||||||||      
T  39785086 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaataacaacaaaacagccctaag 39784987  T
Q  274 ctagtgtata 283  Q
    ||||||||||    
T  39784986 ctagtgtata 39784977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 262
Target Start/End: Complemental strand, 18853457 - 18853356
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 255  Q
    |||||||| ||||||||||||||||||||| |||| |||    ||||||||||||||| ||||||||||||| |||||  ||||||||||||||||||||    
T  18853457 tgttgtgaatccggttgaaactcacaccaacgaaacaaa----gatgtgtggagcaagagatagtggtaatctatgag-tcaaatggtttccaagcaaac 18853363  T
Q  256 aacaaaa 262  Q
    |||||||    
T  18853362 aacaaaa 18853356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 275
Target Start/End: Complemental strand, 18870849 - 18870734
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 255  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| |||| |||||||| |||||   |||||||||||||||||||    
T  18870849 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagataatggtaatctatgag-ttaaatggtttccaagcaaac 18870754  T
Q  256 aacaaaaccagccctagact 275  Q
    |||||||   ||||||||||    
T  18870753 aacaaaaaacgccctagact 18870734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 25328540 - 25328456
Alignment:
Q  177 tcacaccaatgaaataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    ||||| |||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||    
T  25328540 tcacaacaatgaaataaatcaatgatgtgcggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaa 25328456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 281
Target Start/End: Complemental strand, 10689442 - 10689309
Alignment:
Q  147 ttttgcttctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttc 246  Q
    ||||| || ||||||| || ||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||||| |||||  | |||||||||    
T  10689442 ttttgattgtgttgtgttttcggttgaaactcacaccaatgaaa--aacaaagatgtgtggagcaagagatagtggtaatctatgag-tctaatggtttc 10689346  T
Q  247 caagca--aacaacaaaaccagccctagactagtgta 281  Q
    ||||||  |||||||||| || ||||||  |||||||    
T  10689345 caagcaacaacaacaaaaacaaccctagtgtagtgta 10689309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 281
Target Start/End: Complemental strand, 33038063 - 33037972
Alignment:
Q  192 aaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--aacaacaa-aaccagccctagactagtgta 281  Q
    |||||| ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||  |||||||| || ||||||||||||||||||    
T  33038063 aaacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaacaacaacaataaacagccctagactagtgta 33037972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 35745213 - 35745298
Alignment:
Q  177 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  35745213 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 35745298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 10684528 - 10684452
Alignment:
Q  177 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc 251  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  10684528 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 10684452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 19752683 - 19752609
Alignment:
Q  154 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaat 230  Q
    |||||||||| ||||||  ||| |||||||||||||| |||||| ||||||||||||||  |  |||||||||||||    
T  19752683 tctgttgtgaatccggtaaaaa-tcacaccaatgaaa-aaacaaagatgtgtggagcaaaaggaagtggtaatcaat 19752609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 155 - 283
Target Start/End: Complemental strand, 1457446 - 1457315
Alignment:
Q  155 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa 253  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  1457446 ctgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaa 1457347  T
Q  254 acaaca--aaaccagccctagactagtgtata 283  Q
    ||||||  ||| ||||||||||||||||||||    
T  1457346 acaacaacaaagcagccctagactagtgtata 1457315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 156 - 283
Target Start/End: Original strand, 27444771 - 27444901
Alignment:
Q  156 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaa 254  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  27444771 tgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagtacaaatggtctccaagcaaa 27444870  T
Q  255 caaca--aaaccagccctagactagtgtata 283  Q
    |||||  | | ||||||||||||||||||||    
T  27444871 caacaacatagcagccctagactagtgtata 27444901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 156 - 283
Target Start/End: Original strand, 43592080 - 43592210
Alignment:
Q  156 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaa 254  Q
    |||||||| |||||||  ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  43592080 tgttgtgaatccggttccaaagtcacatcaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaa 43592179  T
Q  255 caaca--aaaccagccctagactagtgtata 283  Q
    |||||  ||| ||||||||||||||||||||    
T  43592180 caacaacaaagcagccctagactagtgtata 43592210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 156 - 283
Target Start/End: Original strand, 43598525 - 43598655
Alignment:
Q  156 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaa 254  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||    
T  43598525 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaaa 43598624  T
Q  255 caaca--aaaccagccctagactagtgtata 283  Q
    |||||  ||| ||||||||||||||||||||    
T  43598625 caacaacaaagcagccctagactagtgtata 43598655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 156 - 283
Target Start/End: Original strand, 43604017 - 43604147
Alignment:
Q  156 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaa 254  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||    
T  43604017 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaaa 43604116  T
Q  255 caaca--aaaccagccctagactagtgtata 283  Q
    |||||  ||| ||||||||||||||||||||    
T  43604117 caacaacaaagcagccctagactagtgtata 43604147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 156 - 283
Target Start/End: Original strand, 43609509 - 43609639
Alignment:
Q  156 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaa 254  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||    
T  43609509 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaaa 43609608  T
Q  255 caaca--aaaccagccctagactagtgtata 283  Q
    |||||  ||| ||||||||||||||||||||    
T  43609609 caacaacaaagcagccctagactagtgtata 43609639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 156 - 283
Target Start/End: Original strand, 27449615 - 27449745
Alignment:
Q  156 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaa 254  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  27449615 tgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatatgtggagcaagagatagtggtaatcaatgagtacaaatggtctccaagcaaa 27449714  T
Q  255 caaca--aaaccagccctagactagtgtata 283  Q
    |||||  | | ||||||||||||||||||||    
T  27449715 caacaacatagcagccctagactagtgtata 27449745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 173 - 283
Target Start/End: Original strand, 30631227 - 30631338
Alignment:
Q  173 aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--aacaacaaaaccagccct 270  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||  |||||||||| |||||||    
T  30631227 aaactcacacaaatgaaataaacaatgatgtgtggagcaagagatagtggtaatctatgagaacaaatggttttcaagcaacaacaacaaaa-cagccct 30631325  T
Q  271 agactagtgtata 283  Q
    |||||||||||||    
T  30631326 agactagtgtata 30631338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 28807837 - 28807729
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 274  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||  |    
T  28807837 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 28807738  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  28807737 tagtgtata 28807729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 15044512 - 15044618
Alignment:
Q  177 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 274  Q
    ||||||||||||||||  |||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| | |||||||  ||| |||||||||||    
T  15044512 tcacaccaatgaaata--caatgacgtgtagagcaagtgatagtggtaatcaatgagaacaaatggtctccaaaccaacaacaacaaaacagccctagac 15044609  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  15044610 tagtgtata 15044618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 31180079 - 31180142
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtg 221  Q
    |||||||| |||||||||||||||||||||||||   ||||||||||||||||||||| |||||||    
T  31180079 tgttgtgaatccggttgaaactcacaccaatgaa--taacaatgatgtgtggagcaagagatagtg 31180142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 37556887 - 37556802
Alignment:
Q  177 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||| ||||| |||||| |||||||  ||||||| ||||||||    
T  37556887 tcacaccaatgataataaaccaaagatgtgtggagcaagtgatagtgataatctatgagagcaaatggcctccaagctaacaacaa 37556802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 37561709 - 37561624
Alignment:
Q  177 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||| ||||| |||||| |||||||  ||||||| ||||||||    
T  37561709 tcacaccaatgataataaaccaaagatgtgtggagcaagtgatagtgataatctatgagagcaaatggcctccaagctaacaacaa 37561624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 281
Target Start/End: Original strand, 38191983 - 38192105
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 253  Q
    |||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||| |   |||  || ||||||||  |    
T  38191983 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 38192077  T
Q  254 acaacaaaaccagccctagactagtgta 281  Q
    ||||||||| ||||||||||||||||||    
T  38192078 acaacaaaaacagccctagactagtgta 38192105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 281
Target Start/End: Original strand, 38219208 - 38219330
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 253  Q
    |||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||| |   |||  || ||||||||  |    
T  38219208 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 38219302  T
Q  254 acaacaaaaccagccctagactagtgta 281  Q
    ||||||||| ||||||||||||||||||    
T  38219303 acaacaaaaacagccctagactagtgta 38219330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 2785197 - 2785282
Alignment:
Q  177 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  2785197 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 2785282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 31397256 - 31397171
Alignment:
Q  177 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  31397256 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 31397171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 31402113 - 31402028
Alignment:
Q  177 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  31402113 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 31402028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 33791158 - 33791223
Alignment:
Q  195 caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  33791158 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 33791223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 35387474 - 35387527
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 212  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  35387474 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 35387527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 33768021 - 33768086
Alignment:
Q  195 caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    ||||||||||||||||||||||||| | ||||| |||||  ||||||   ||||||| ||||||||    
T  33768021 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatgacctccaagctaacaacaa 33768086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 155 - 283
Target Start/End: Original strand, 51520257 - 51520388
Alignment:
Q  155 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa 253  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  51520257 ctgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaa 51520356  T
Q  254 acaaca--aaaccagccctagactagtgtata 283  Q
    ||||||  ||| ||||||||||||||||||||    
T  51520357 acaacaacaaagcagccctagactagtgtata 51520388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 9224668 - 9224560
Alignment:
Q  177 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 274  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  9224668 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 9224569  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  9224568 tagtgtata 9224560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 9229455 - 9229347
Alignment:
Q  177 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 274  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  9229455 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 9229356  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  9229355 tagtgtata 9229347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 155 - 283
Target Start/End: Complemental strand, 56146996 - 56146865
Alignment:
Q  155 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa 253  Q
    ||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||    
T  56146996 ctgttgtgaatccggttccaaattcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaa 56146897  T
Q  254 acaaca--aaaccagccctagactagtgtata 283  Q
    ||||||  ||| ||||||||||||||||||||    
T  56146896 acaacaacaaagcagccctagactagtgtata 56146865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 177 - 282
Target Start/End: Original strand, 3813846 - 3813954
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctaga 273  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||  ||| ||| ||||||    
T  3813846 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtctccaagcaaacaacaacaaaacagtcctaga 3813945  T
Q  274 ctagtgtat 282  Q
    |||||||||    
T  3813946 ctagtgtat 3813954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 18855549 - 18855657
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 274  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||  |    
T  18855549 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 18855648  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  18855649 tagtgtata 18855657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 177 - 281
Target Start/End: Complemental strand, 45348079 - 45347973
Alignment:
Q  177 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| |||||||  ||| ||| |||||||    
T  45348079 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatggtcttcaagctaacaacaacaaaacagtcctagac 45347980  T
Q  275 tagtgta 281  Q
    |||||||    
T  45347979 tagtgta 45347973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 177 - 281
Target Start/End: Complemental strand, 45357558 - 45357452
Alignment:
Q  177 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| |||||||  ||| ||| |||||||    
T  45357558 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatggtcttcaagctaacaacaacaaaacagtcctagac 45357459  T
Q  275 tagtgta 281  Q
    |||||||    
T  45357458 tagtgta 45357452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 156 - 281
Target Start/End: Original strand, 24741748 - 24741871
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 253  Q
    |||||||| ||||||||||||||||||||||||||   |||| ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||  |    
T  24741748 tgttgtgaatccggttgaaactcacaccaatgaaa---acaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaaca 24741843  T
Q  254 acaacaaaaccagccctagactagtgta 281  Q
    ||||||||| ||||||||||||||||||    
T  24741844 acaacaaaaacagccctagactagtgta 24741871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 5732486 - 5732593
Alignment:
Q  177 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 274  Q
    |||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||  ||| ||||||||  |    
T  5732486 tcacaccaatgaaa-atacaatgatgtgtggagcaagtgatggtggtaatcaatgagaacaaatggtctccaagctaacaacaacaaaacagccctaagc 5732584  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  5732585 tagtgtata 5732593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 156 - 281
Target Start/End: Original strand, 29760449 - 29760572
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 253  Q
    |||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| |||||||||||||||| | |  ||||||||||||||||  |    
T  29760449 tgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatcaat-aaacaaaatggtttccaagcaaca 29760545  T
Q  254 acaacaaaaccagccctagactagtgta 281  Q
    ||||||||| || |||||||||||||||    
T  29760546 acaacaaaa-caaccctagactagtgta 29760572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 35323 - 35215
Alignment:
Q  177 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 274  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  35323 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 35224  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  35223 tagtgtata 35215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 12396735 - 12396843
Alignment:
Q  177 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 274  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  12396735 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagcagccctagac 12396834  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  12396835 tagtgtata 12396843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 12406155 - 12406263
Alignment:
Q  177 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 274  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  12406155 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagcagccctagac 12406254  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  12406255 tagtgtata 12406263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 24024589 - 24024506
Alignment:
Q  177 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24024589 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaa 24024506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 4866553 - 4866661
Alignment:
Q  177 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 274  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||  ||| ||| |||||||    
T  4866553 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgaggacaaatggtctccaagcaaacaacaacaaaacagtcctagac 4866652  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  4866653 tagtgtata 4866661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 31109844 - 31109737
Alignment:
Q  177 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 274  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| |||||||  ||| |||||||| ||    
T  31109844 tcacaccaatgaaataaacaatgatgtgtgcagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta-ac 31109746  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  31109745 tagtgtata 31109737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 2057763 - 2057866
Alignment:
Q  154 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa 253  Q
    |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||| |||||  ||||||||||||||||||    
T  2057763 tctgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatctatgag-tcaaatggtttccaagcaa 2057859  T
Q  254 acaacaa 260  Q
    |||||||    
T  2057860 acaacaa 2057866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 156 - 281
Target Start/End: Complemental strand, 20357837 - 20357713
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc---a 252  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| ||||||||||||| |||||  |||||||| |||||||        
T  20357837 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagatagtggtaatctatgag-ccaaatggtctccaagctaac 20357742  T
Q  253 aacaacaaaaccagccctagactagtgta 281  Q
    |||||||||| ||||||||||||||||||    
T  20357741 aacaacaaaaacagccctagactagtgta 20357713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 19992135 - 19992243
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 274  Q
    ||||||||||||||||||| || ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||  ||||||| || ||||||||  |    
T  19992135 tcacaccaatgaaataaaccaaagatgtgtggagcaggtgatagtgataatcaatgagaacaaatggcttccaagcttacaacaacaaacagccctaagc 19992234  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  19992235 tagtgtata 19992243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 21812501 - 21812393
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 274  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||| ||||||| |||||||| |||||||| || ||||||||  |    
T  21812501 tcacaccaatgaaataaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatggcttccaagctaacaacaacaaacagccctaagc 21812402  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  21812401 tagtgtata 21812393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 281
Target Start/End: Complemental strand, 1533730 - 1533608
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 253  Q
    |||||||| ||||||| ||||||||||||||||||   |||| ||||||||||||||   |||||||||||||||||||| |||  |||||||||||  |    
T  1533730 tgttgtgaatccggttaaaactcacaccaatgaaa---acaaagatgtgtggagcaaaatatagtggtaatcaatgagaaaaaa--gtttccaagcaaca 1533636  T
Q  254 acaacaaaaccagccctagactagtgta 281  Q
    |||||||||||||||| || ||||||||    
T  1533635 acaacaaaaccagccccagtctagtgta 1533608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 281
Target Start/End: Original strand, 21645818 - 21645940
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 253  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| |||||   |||  || ||||||||  |    
T  21645818 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaaaagggagtggtaatctatgag--taaagtgtctccaagcaaca 21645912  T
Q  254 acaacaaaaccagccctagactagtgta 281  Q
    ||||||||| ||||||||| ||||||||    
T  21645913 acaacaaaaacagccctagtctagtgta 21645940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 2479148 - 2479221
Alignment:
Q  156 tgttgtga-ttccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatg 231  Q
    |||||||| |||||||||| | |||||||||||||  |||||| ||||||||||||||  || ||||||||||||||    
T  2479148 tgttgtgagttccggttgataatcacaccaatgaa--aaacaaagatgtgtggagcaaagga-agtggtaatcaatg 2479221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 47263485 - 47263562
Alignment:
Q  152 cttctgttgtga-ttccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatg 231  Q
    |||||||||||| |||||||||| | |||||||||||||  |||||| |||| |||||||||  || ||||||||||||||    
T  47263485 cttctgttgtgagttccggttgataatcacaccaatgaa--aaacaaagatgcgtggagcaaagga-agtggtaatcaatg 47263562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 16879894 - 16879970
Alignment:
Q  177 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc 251  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  16879894 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 16879970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 16884750 - 16884826
Alignment:
Q  177 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc 251  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  16884750 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 16884826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 24261587 - 24261511
Alignment:
Q  177 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc 251  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  24261587 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 24261511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 24266466 - 24266390
Alignment:
Q  177 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc 251  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  24266466 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 24266390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 11856795 - 11856903
Alignment:
Q  177 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 274  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  11856795 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 11856894  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  11856895 tagtgtata 11856903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 14737838 - 14737730
Alignment:
Q  177 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  14737838 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 14737739  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  14737738 tagtgtata 14737730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 14742697 - 14742589
Alignment:
Q  177 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||  ||| |||||||||||    
T  14742697 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcatacaacaacaaaacagccctagac 14742598  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  14742597 tagtgtata 14742589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 22010958 - 22010850
Alignment:
Q  177 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||| | |||||||||    
T  22010958 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagccgccctagac 22010859  T
Q  275 tagtgtata 283  Q
     ||||||||    
T  22010858 aagtgtata 22010850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 6438324 - 6438431
Alignment:
Q  177 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagact 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||  ||    
T  6438324 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaaccaatggcttccaagcaaacaacaacaaacagccctaagct 6438423  T
Q  276 agtgtata 283  Q
    ||||||||    
T  6438424 agtgtata 6438431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 28184325 - 28184436
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaac--aaatggtttccaagcaaacaaca--aaaccagcccta 271  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||| |||||||||||||||  ||| ||||||||    
T  28184325 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaaaatggtctccaagcaaacaacaacaaaacagcccta 28184424  T
Q  272 gactagtgtata 283  Q
    ||||||||||||    
T  28184425 gactagtgtata 28184436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 28155832 - 28155749
Alignment:
Q  177 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| | ||||| ||||||||    
T  28155832 tcacaccaatgcaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagagcaaatggtcttcaagctaacaacaa 28155749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 281
Target Start/End: Complemental strand, 5675057 - 5674934
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 253  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||  ||||||||||||||| ||| | ||| | || |||||||  |    
T  5675057 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaagatagtggtaatcaaagagta-aaaagtttcccaagcaaca 5674962  T
Q  254 acaacaaaaccagccctagactagtgta 281  Q
    ||||||||||||||||||| ||||||||    
T  5674961 acaacaaaaccagccctagtctagtgta 5674934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 281
Target Start/End: Complemental strand, 30126084 - 30125960
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa-- 253  Q
    |||||||| ||||||||||| ||||||||||||   |||||| ||||||||||||||| | ||||| ||||| |||||  |||||||| ||||||| |      
T  30126084 tgttgtgaatccggttgaaaatcacaccaatga---aaacaaagatgtgtggagcaagaggtagtgataatctatgag-ccaaatggtctccaagctaac 30125989  T
Q  254 -acaacaaaaccagccctagactagtgta 281  Q
     ||||||||| ||||||||||||||||||    
T  30125988 tacaacaaaaacagccctagactagtgta 30125960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 6005239 - 6005324
Alignment:
Q  177 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  6005239 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 6005324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 5343322 - 5343387
Alignment:
Q  195 caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  5343322 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 5343387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 33330690 - 33330625
Alignment:
Q  195 caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  33330690 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 33330625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 33336207 - 33336122
Alignment:
Q  177 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||  |||||||  ||||| | ||||||||    
T  33336207 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaaactaacaacaa 33336122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 16838566 - 16838651
Alignment:
Q  177 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    |||||||||||| ||||||| |||||| ||||||||||||||||| | ||||| |||||  |||||||  | ||||| ||||||||    
T  16838566 tcacaccaatgagaataaaccaatgatatgtggagcaagtgatagagataatctatgagtgcaaatggccttcaagctaacaacaa 16838651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 31936398 - 31936470
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatg 231  Q
    |||||||| ||||||| ||| ||||||||||||||  ||||| ||||||||||||||  |  ||||||||||||||    
T  31936398 tgttgtgaatccggttaaaa-tcacaccaatgaaa--aacaaagatgtgtggagcaaaaggaagtggtaatcaatg 31936470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 22173456 - 22173348
Alignment:
Q  177 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 274  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  22173456 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 22173357  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  22173356 tagtgtata 22173348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 154 - 281
Target Start/End: Original strand, 7167049 - 7167174
Alignment:
Q  154 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca- 252  Q
    |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||| ||||| | ||||||||||||||||     
T  7167049 tctgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatctatgagca-aaatggtttccaagcaa 7167145  T
Q  253 -aacaacaaaaccagccctagactagtgta 281  Q
     |||||||||| ||||||||||||||||||    
T  7167146 caacaacaaaa-cagccctagactagtgta 7167174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 18656256 - 18656363
Alignment:
Q  177 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 274  Q
    |||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||  ||| ||||||||  |    
T  18656256 tcacaccaatgaaa-atacaatgatgtgtggagcaagtgatggtggtaatcaatgagaacaaatggtctccaagctaacaacaacaaaacagccctaagc 18656354  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  18656355 tagtgtata 18656363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 156 - 281
Target Start/End: Complemental strand, 2671876 - 2671752
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--- 252  Q
    |||||||| ||||||| ||||||||||||||||||   |||| ||||||||||||||| ||||||||||||| |||||  |||||||| ||||||||       
T  2671876 tgttgtgaatccggttaaaactcacaccaatgaaa---acaaagatgtgtggagcaagagatagtggtaatctatgag-ccaaatggtctccaagcaaac 2671781  T
Q  253 aacaacaaaaccagccctagactagtgta 281  Q
    |||||||||| ||||||||| ||||||||    
T  2671780 aacaacaaaaacagccctagtctagtgta 2671752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 40373085 - 40372986
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 255  Q
    |||||||| ||||||| ||||||||||||||||||   |||| | ||||||||||||| ||||||||||||||||| | | |||||||||||||||||||    
T  40373085 tgttgtgaatccggttaaaactcacaccaatgaaa---acaaaggtgtgtggagcaagagatagtggtaatcaatgggca-aaatggtttccaagcaaac 40372990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 281
Target Start/End: Original strand, 8477170 - 8477295
Alignment:
Q  155 ctgttgtgattccggt-tgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa 253  Q
    ||||||||| |||||| | ||||||||||||||||||   |||| ||||||||||||||  ||||||||||||||| ||| | ||| | || ||||||||    
T  8477170 ctgttgtgaatccggtataaaactcacaccaatgaaa---acaaagatgtgtggagcaaaagatagtggtaatcaaagagtaaaaa-gtttcccaagcaa 8477265  T
Q  254 --acaacaaaaccagccctagactagtgta 281  Q
      ||||||||||||||||||||||||||||    
T  8477266 caacaacaaaaccagccctagactagtgta 8477295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 283
Target Start/End: Complemental strand, 28504145 - 28504020
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 253  Q
    |||||||| ||||||   ||||||||||||||||   ||||||||||||||||||||  | ||||| ||||| ||||||| ||||||||||||||||  |    
T  28504145 tgttgtgaatccggtcttaactcacaccaatgaat--aacaatgatgtgtggagcaaaaggtagtgataatctatgagaa-aaatggtttccaagcaaca 28504049  T
Q  254 acaacaaaaccagccctagactagtgtata 283  Q
    ||||||||| ||||||| ||||||||||||    
T  28504048 acaacaaaa-cagcccttgactagtgtata 28504020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 156 - 260
Target Start/End: Complemental strand, 8739354 - 8739254
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 255  Q
    |||||||| | ||||||| ||||||||||||||||   |||| |||||||||||||||  |||||||||||| |||||  |||||||||||||||||||     
T  8739354 tgttgtgaattcggttgagactcacaccaatgaaa---acaaagatgtgtggagcaagaaatagtggtaatctatgag-tcaaatggtttccaagcaaat 8739259  T
Q  256 aacaa 260  Q
    |||||    
T  8739258 aacaa 8739254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 156 - 260
Target Start/End: Complemental strand, 9091592 - 9091492
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 255  Q
    |||||||| | ||||||| ||||||||||||||||   |||| |||||||||||||||  |||||||||||| |||||  |||||||||||||||||||     
T  9091592 tgttgtgaattcggttgagactcacaccaatgaaa---acaaagatgtgtggagcaagaaatagtggtaatctatgag-tcaaatggtttccaagcaaat 9091497  T
Q  256 aacaa 260  Q
    |||||    
T  9091496 aacaa 9091492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 8512037 - 8512122
Alignment:
Q  177 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||| ||||||||    
T  8512037 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcttccaagctaacaacaa 8512122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 8516917 - 8517002
Alignment:
Q  177 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||| ||||||||    
T  8516917 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcttccaagctaacaacaa 8517002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 2677351 - 2677266
Alignment:
Q  177 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||| |||||||  ||||||| ||||||||    
T  2677351 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcctccaagctaacaacaa 2677266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 2673195 - 2673110
Alignment:
Q  177 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| ||||||  ||||||  ||||||| ||||||||    
T  2673195 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagagtaaatggcctccaagctaacaacaa 2673110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 10207755 - 10207840
Alignment:
Q  177 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  10207755 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 10207840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 44312885 - 44312777
Alignment:
Q  177 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||| | |||||||||    
T  44312885 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagccgccctagac 44312786  T
Q  275 tagtgtata 283  Q
     ||||||||    
T  44312785 aagtgtata 44312777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 154 - 281
Target Start/End: Complemental strand, 11099219 - 11099093
Alignment:
Q  154 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca- 252  Q
    |||||||||| ||||||||||||||||||||||||||  ||||| ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||     
T  11099219 tctgttgtgaatccggttgaaactcacaccaatgaaa--aacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaa 11099123  T
Q  253 -aacaacaaaaccagccctagactagtgta 281  Q
     |||||||||| ||||||||||||||||||    
T  11099122 caacaacaaaaacagccctagactagtgta 11099093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 32246607 - 32246716
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctaga 273  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||  ||| ||| ||||||    
T  32246607 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatggtctccaagctaacaacaacaaaacagtcctaga 32246706  T
Q  274 ctagtgtata 283  Q
    ||||||||||    
T  32246707 ctagtgtata 32246716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 39812250 - 39812141
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctaga 273  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||  ||| ||||||||      
T  39812250 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagccctaag 39812151  T
Q  274 ctagtgtata 283  Q
    ||||||||||    
T  39812150 ctagtgtata 39812141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 156 - 281
Target Start/End: Original strand, 14291295 - 14291419
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--- 252  Q
    |||||||| ||||||| ||||||||||||||||||   |||| | ||||||||||||| ||||||||||||||||| | | ||||||||||||||||       
T  14291295 tgttgtgaatccggttaaaactcacaccaatgaaa---acaaaggtgtgtggagcaagagatagtggtaatcaatgggca-aaatggtttccaagcaaac 14291390  T
Q  253 aacaacaaaaccagccctagactagtgta 281  Q
    |||||||||| ||||||||||||| ||||    
T  14291391 aacaacaaaaacagccctagactaatgta 14291419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 281
Target Start/End: Complemental strand, 9296691 - 9296567
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--- 252  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||  | ||||||||||| ||||| | ||||||||||||||||       
T  9296691 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaaggtagtggtaatctatgagca-aaatggtttccaagcaaac 9296596  T
Q  253 aacaacaaaaccagccctagactagtgta 281  Q
    |||||||||| ||||||||| ||||||||    
T  9296595 aacaacaaaaacagccctagtctagtgta 9296567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 19344243 - 19344327
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||| |||||||  ||||||| ||||||||    
T  19344243 tcacaccaatgaaataaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatggcctccaagctaacaacaa 19344327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 19349101 - 19349185
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||| |||||||  ||||||| ||||||||    
T  19349101 tcacaccaatgaaataaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatggcctccaagctaacaacaa 19349185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 281
Target Start/End: Original strand, 25403443 - 25403565
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 253  Q
    |||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||| |   |||  || ||||||||  |    
T  25403443 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 25403537  T
Q  254 acaacaaaaccagccctagactagtgta 281  Q
    ||||||||| ||||||||||||||||||    
T  25403538 acaacaaaaacagccctagactagtgta 25403565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 281
Target Start/End: Original strand, 25398305 - 25398427
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 253  Q
    |||||||| || ||||||||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||| |   |||  || ||||||||  |    
T  25398305 tgttgtgaatctggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 25398399  T
Q  254 acaacaaaaccagccctagactagtgta 281  Q
    ||||||||| ||||||||||||||||||    
T  25398400 acaacaaaaacagccctagactagtgta 25398427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 25445352 - 25445244
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 274  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||  |    
T  25445352 tcacaccaatgaaataaaccaatgatgtgtggagcaagcgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 25445253  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  25445252 tagtgtata 25445244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 39445322 - 39445430
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 274  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| || ||||||||  |    
T  39445322 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgtgaacaaatggcttccaagcaaacaacaacaaacagccctaagc 39445421  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  39445422 tagtgtata 39445430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 44024135 - 44024027
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 274  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||  |    
T  44024135 tcacaccaatgaaataaaccaatgatgtgtggagcaactgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 44024036  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  44024035 tagtgtata 44024027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 41386571 - 41386650
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 255  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  41386571 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcaaac 41386650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 41398060 - 41398144
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  41398060 tcacaccaatgaaataaaccaattatgtgtggagcaagtgatagtgataatcaatgagaacatatggtctccaagcaaacaacaa 41398144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 1055274 - 1055166
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 274  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||  ||||||||  ||||||| || ||||||||  |    
T  1055274 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgtgaacaaatgtcttccaagcttacaacaacaaacagccctaagc 1055175  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  1055174 tagtgtata 1055166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 43988709 - 43988644
Alignment:
Q  195 caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    ||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||| ||||||||    
T  43988709 caatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcttccaagctaacaacaa 43988644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 24787624 - 24787564
Alignment:
Q  192 aaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa 253  Q
    |||||| ||||||||||||||| |||||||||||| |||||| | |||||||||||||||||    
T  24787624 aaacaaagatgtgtggagcaagagatagtggtaataaatgagca-aaatggtttccaagcaa 24787564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 281
Target Start/End: Complemental strand, 24203054 - 24202932
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 255  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||  |  |||||||||| ||| |   |||  || |||||||||||    
T  24203054 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaagggagtggtaatctatgtg--taaagtgtctccaagcaaac 24202960  T
Q  256 aaca--aaaccagccctagactagtgta 281  Q
    ||||  ||| |||||||| |||||||||    
T  24202959 aacaacaaaacagccctaaactagtgta 24202932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 19359132 - 19359079
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 212  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  19359132 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 19359079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 185 - 293
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 274  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| || ||||||||  |    
T  185 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgatggtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 284  T
Q  275 tagtgtata 283  Q
    |||||||||    
T  285 tagtgtata 293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 34211 - 34132
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 255  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  34211 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcaaac 34132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 9902 - 9818
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||| ||||| ||||||||||    
T  9902 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagagcaaatggtctccaaccaaacaacaa 9818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 143 - 40
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctaga 273  Q
    |||||||||| |||||||| |||||||||||||||||||||      |||||||||||| |||||||| |||||| ||||||||  ||| ||||||||      
T  143 tcacaccaattaaataaaccaatgatgtgtggagcaagtga------taatcaatgagagcaaatggtctccaagtaaacaacaacaaaacagccctaag 50  T
Q  274 ctagtgtata 283  Q
    ||||||||||    
T  49 ctagtgtata 40  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 279
Target Start/End: Complemental strand, 528 - 404
Alignment:
Q  155 ctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca-- 252  Q
    ||||||||| |||  || ||||||||||||||||||   |||| ||||||||||||||| ||||||||||||| ||||| | ||||||||||||||||      
T  528 ctgttgtgaatccatttaaaactcacaccaatgaaa---acaaagatgtgtggagcaagagatagtggtaatctatgagcaaaaatggtttccaagcaac 432  T
Q  253 aacaac-aaaaccagccctagactagtg 279  Q
    |||||| |||| |||||||| |||||||    
T  431 aacaacaaaaaacagccctaaactagtg 404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 13171 - 13233
Alignment:
Q  177 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaa 238  Q
    ||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||    
T  13171 tcacaccaatgaaataaaccaaagatatgtggagcaagtgatagtgataatcaatgagaacaa 13233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 19428 - 19343
Alignment:
Q  177 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  19428 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 19343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 14573 - 14497
Alignment:
Q  177 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc 251  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  14573 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 14497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 149219 - 149134
Alignment:
Q  177 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  149219 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 149134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 2514 - 2429
Alignment:
Q  177 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 260  Q
    |||||||||||| |||||| ||||||||||||||||||||||||  | ||||| |||||  |||||||  ||||||| ||||||||    
T  2514 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgataaagataatccatgagtgcaaatggcctccaagctaacaacaa 2429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 281
Target Start/End: Complemental strand, 24331 - 24208
Alignment:
Q  156 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 253  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||| |   |||  || ||||||||  |    
T  24331 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 24237  T
Q  254 acaac-aaaaccagccctagactagtgta 281  Q
    ||||| |||||||||||||||||||||||    
T  24236 acaacaaaaaccagccctagactagtgta 24208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 44247 - 44174
Alignment:
Q  156 tgttgtga-ttccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatg 231  Q
    |||||||| |||||||||| | |||||||||||||  |||||| ||||||||||||||  || ||||||||||||||    
T  44247 tgttgtgagttccggttgataatcacaccaatgaa--aaacaaagatgtgtggagcaaagga-agtggtaatcaatg 44174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 182228 - 182152
Alignment:
Q  177 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc 251  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  182228 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 182152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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