View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13982_low_29 (Length: 239)
Name: NF13982_low_29
Description: NF13982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13982_low_29 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 1750120 - 1749899
Alignment:
| Q |
18 |
agttagttatttatcatggactgcggctatcatggttgcgatattttggggcatcacattagcatggcttgtcaagtctaactgggaagtgatctctaag |
117 |
Q |
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| T |
1750120 |
agttagttatttatcatggactgctgctatcatcgttgcgatattttggggcatcacattagcatggcttgtcaagtctaactgggaagtgatctctaag |
1750021 |
T |
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| Q |
118 |
gaagatattgtattctcagaagaaatcaagaaattcatagcaattgtctcagaaggaatcaaaagattcttggcaattatcgttgttttatacataactt |
217 |
Q |
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| T |
1750020 |
gaagatattgtattctcagaagaaatcaagaaattcatagcaattgtctcagaaggaatcaaaagattcttggcaattatcgttgttttatacataactt |
1749921 |
T |
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| Q |
218 |
gtacttttctctttttcataac |
239 |
Q |
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| T |
1749920 |
gcacttttatctttttcataac |
1749899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 1754159 - 1754018
Alignment:
| Q |
18 |
agttagttatttatcatggactgcggctatcatggttgcgatattttggggcatcacattagcatggcttgtcaagtctaactgggaagtgatctctaag |
117 |
Q |
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| T |
1754159 |
agttagttttgtatcatggattgctgctatgatcattgccatcttttatggcatcatattagcatggcttgtcaagtctaactggaaagtgatctctaat |
1754060 |
T |
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| Q |
118 |
gaagatattgtattctcagaagaaatcaagaaattcatagca |
159 |
Q |
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| T |
1754059 |
gaagatattgtattaacaaaagaaatcaagaaattcatagca |
1754018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 2179673 - 2179610
Alignment:
| Q |
96 |
taactgggaagtgatctctaaggaagatattgtattctcagaagaaatcaagaaattcatagca |
159 |
Q |
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| T |
2179673 |
taactgggaagtgatctccaacgaagatatggtattctcaaaaggaatccagatattgatagca |
2179610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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