View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13982_low_6 (Length: 618)
Name: NF13982_low_6
Description: NF13982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13982_low_6 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 582; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 5 - 618
Target Start/End: Complemental strand, 35685834 - 35685221
Alignment:
| Q |
5 |
ttttcacacaagattgattaaagcccatcacttgtaccgtttttcattcatcttttttgttcttcattgcaggcaatattcttttctctgttatttctaa |
104 |
Q |
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| T |
35685834 |
ttttcacacaagattgattgaagcccatcacttgtaccgttttgcattcatattttttgttcttcattgcaggcaatattcttttctctgttatttctaa |
35685735 |
T |
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| Q |
105 |
cacctttgcgctttcgctgttgtgttttattgcatatatgttcttgatttcagatgctccgatgcaaatctaatagacattcctgttgaagtggagacac |
204 |
Q |
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| T |
35685734 |
cacctttgcgctttcgctgttgtgttttattgcatatatgttcttgatttcagatgctccgatgcaaatctaatagacattcctgttgaagtggagacac |
35685635 |
T |
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| Q |
205 |
ctgaccgccactattatcatgtgagaatttggtagtcataggtttttattttaacatattaattaatgagtgtacttaaatcaatggaggacagtgaaag |
304 |
Q |
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| T |
35685634 |
ctgaccgccactattatcatgtgagaatttggtagtcataggtttttattttaacatattaattaatgagtgtacttaaatcaatggaggacagtgaaag |
35685535 |
T |
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| Q |
305 |
ttaacttttgaggatgaatttttatagtgtattttcgtccttgtctgcagcttgccctctttacaaacaaagatgtgagtgcatacgaggagttgacctg |
404 |
Q |
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| T |
35685534 |
ttaacttttgaggatgaatttttatagtgtatttttgtccttgtctgcagcttgccctctttacaaacaaagatgtgagtgcatacgaggagttgacctg |
35685435 |
T |
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| Q |
405 |
ggtaagttccttagaacaatacatatcatttgcttcttatttgtttttaaatagttgcattcaaattgtgatctataaagcctccttttgattgtgtatt |
504 |
Q |
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| T |
35685434 |
ggtaagttccttagaacaatacatatcatttgcttcttatttgtttttaaatagttgcattcaaattctgatctataaagcctccttttgattgtgtatt |
35685335 |
T |
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| Q |
505 |
tgtgtagtaaatagtgtattcgctgatctcactctctataactaaattctatgatgattttgtctcctatccccttatgcatgccctatcttacctacat |
604 |
Q |
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| T |
35685334 |
tgtgtaataaatagtgtattcgctgatctcactctctataactaaattctatgatgattttgtctcctatccccttatacatgccttatcttacctacat |
35685235 |
T |
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| Q |
605 |
tccaatagttcctt |
618 |
Q |
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| T |
35685234 |
tccaatagttcctt |
35685221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 543 - 616
Target Start/End: Complemental strand, 35685220 - 35685147
Alignment:
| Q |
543 |
taactaaattctatgatgattttgtctcctatccccttatgcatgccctatcttacctacattccaatagttcc |
616 |
Q |
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| T |
35685220 |
taactaaattctatgatgattttgtctcctatccccttatacatacctcatcttacctacattccaatagttcc |
35685147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 447 - 517
Target Start/End: Original strand, 48472902 - 48472972
Alignment:
| Q |
447 |
gtttttaaatagttgcattcaaattgtgatctataaagcctccttttgattgtgtatttgtgtagtaaata |
517 |
Q |
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| T |
48472902 |
gtttttaaatagttgcattcaattagtgacacataaagcattcttttgattgtgtatttgtgtagtaaata |
48472972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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