View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13983_high_10 (Length: 423)

Name: NF13983_high_10
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13983_high_10
NF13983_high_10
[»] chr3 (18 HSPs)
chr3 (1-404)||(679593-679996)
chr3 (1-404)||(747511-747919)
chr3 (38-350)||(9595049-9595361)
chr3 (162-324)||(9562507-9562672)
chr3 (113-338)||(2491423-2491648)
chr3 (1-240)||(2659510-2659752)
chr3 (172-350)||(2475981-2476159)
chr3 (1-94)||(2501751-2501844)
chr3 (113-225)||(9566320-9566432)
chr3 (38-328)||(2474463-2474749)
chr3 (275-338)||(7334931-7334994)
chr3 (172-244)||(2630771-2630843)
chr3 (62-142)||(2635214-2635294)
chr3 (275-350)||(755292-755367)
chr3 (283-338)||(7325065-7325120)
chr3 (275-350)||(9566482-9566557)
chr3 (171-241)||(755176-755246)
chr3 (174-244)||(2644902-2644972)


Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 679593 - 679996
Alignment:
Q  1 atcatatccaaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattctacaacaaataagaaccagct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||||||||||    
T  679593 atcatatccaaagcttagtgatgtccatatgtgattctccaaaggagggagtaacttatactttctaacggaaggattccacaacaaataagaaccagct 679692  T
Q  101 tttagcatgcagcaaaagatgccatcgcaagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaa 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679693 tttagcattcagcaaaagatgccatcgcaagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaa 679792  T
Q  201 caacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcgcttagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679793 caacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcgcttagt 679892  T
Q  301 tgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttggtaatttgatgggaaacctacc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  679893 tgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaataaaaaaacttacagaggcatcgaagttggtaatttgatgggaaacctacc 679992  T
Q  401 gaga 404  Q
    ||||    
T  679993 gaga 679996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 747511 - 747919
Alignment:
Q  1 atcatatccaaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattctacaacaaataagaaccagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  747511 atcatatccaaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaatatgaaccagct 747610  T
Q  101 tttagcatgcagcaaaagatgccatcgcaagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaa 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  747611 tttagcatgcagcaaaagatgccatcgcaagatcacattacgtccacaaagttacctcgaattgtaagagtattaggagggtaaagttgtgtatgtgtaa 747710  T
Q  201 caacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcgcttagt 300  Q
    ||||| ||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  747711 caacgatagaagtagataaaaccgaggggattggagaaacatactcaactaactcagccaagttgttccaagaggttatcatgaggtggtggcgcttagt 747810  T
Q  301 tgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttg-----gtaatttgatgggaaac 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||     ||||||||||||||| |    
T  747811 tgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaataaaaaaacttacagaggcatcgaagttgtacgagtaatttgatgggaagc 747910  T
Q  396 ctaccgaga 404  Q
    |||||||||    
T  747911 ctaccgaga 747919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 38 - 350
Target Start/End: Original strand, 9595049 - 9595361
Alignment:
Q  38 tccaaaggaggaagtaacgtatactttctaatggaaggattctacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagcaca 137  Q
    ||||||||||| | |||| || | |||||||||||||| ||| |||| | |||||||||||  || || |  || ||||| |||||||||||||||||||    
T  9595049 tccaaaggaggcaataacttaaattttctaatggaagggttccacaaaacataagaaccaggcttgagaaaacaacaaaaaatgccatcgcaagagcaca 9595148  T
Q  138 ttacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggaga 237  Q
     |||||||||  | |||  || | |||| ||| |||||||||||||||||||||| |||||||||| ||||||||| || ||||  ||| ||||||||||    
T  9595149 atacgtccacgtatttagatccatttgtgagagtattaggagggtaaagttgtgtctgtgtaacaatggtagaagtagaaaaaactgagtggattggaga 9595248  T
Q  238 atcatactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatca 337  Q
    ||||||   |||||| |||||||||||||||  ||||| ||||||||||| ||||||||| ||||| ||||||||||| |||||||| ||| ||||||||    
T  9595249 atcatatagaactaaatcagccaagttgttcatagaggctatcatgaggtggtggcgctttgttgacaattgaaggtgattctttgcaaattttggatca 9595348  T
Q  338 gcaataagagaat 350  Q
    | |||||||||||    
T  9595349 gaaataagagaat 9595361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 162 - 324
Target Start/End: Original strand, 9562507 - 9562672
Alignment:
Q  162 ttgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagc--- 258  Q
    |||| ||||||||||||| |||||||||||| ||||||||| |||||||||| || |||| | ||||||||||  |||||| || ||| |||||| |       
T  9562507 ttgtgagaatattaggagcgtaaagttgtgtctgtgtaacagcggtagaagtagaaaaaaccaaggggattgggaaatcatgctgaacaaactcaccacg 9562606  T
Q  259 caagttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgc 324  Q
    | |  ||||||||||||||| || ||||| ||||||||||||||| ||||||||||||||||||||    
T  9562607 cgaaatgttccaagaggttaccaagaggtggtggcgcttagttgacaattgaaggtgcttctttgc 9562672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 113 - 338
Target Start/End: Complemental strand, 2491648 - 2491423
Alignment:
Q  113 caaaagatgccatcgcaagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaag 212  Q
    |||||||||||||| ||| ||||| ||||   || ||| |||  || | |||| ||| || |||||||||||||||| || ||||||| |||||||||||    
T  2491648 caaaagatgccatcacaatagcaccttaccaacataaatttatgtccatttgtgagattagtaggagggtaaagttgggtctgtgtaataacggtagaag 2491549  T
Q  213 ttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaag 312  Q
    | || |||| |||||| ||||| |||||||  | ||| |||||| ||||||||||    ||||||| |||||||| ||||||||| ||||| ||||||||    
T  2491548 tagaaaaaagcgagggtattggggaatcatgatgaaccaactcacccaagttgttttttgaggttaccatgaggtggtggcgctttgttgacaattgaag 2491449  T
Q  313 gtgcttctttgcgaatgttggatcag 338  Q
     ||||| ||||||||| | |||||||    
T  2491448 atgcttttttgcgaatttaggatcag 2491423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2659510 - 2659752
Alignment:
Q  1 atcatatccaaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattctacaacaaataagaaccagct 100  Q
    ||||||||||||||||||| ||| |||| ||||||||  ||||||||| | |||| || |||||||||||||||| ||| | || ||||||||||||       
T  2659510 atcatatccaaagcttagtaatgaccatttgtgattccgcaaaggaggcaataacttaaactttctaatggaagggttccataagaaataagaaccatta 2659609  T
Q  101 tttagcatgcagcaaaagatgccatcgcaagagc---acattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtg 197  Q
    || ||| | |  ||||| ||||||||||||||||    ||| | ||| |   ||| |  || | |||| ||| ||||||||  |||||||||||| ||||    
T  2659610 ttgagcttaccacaaaatatgccatcgcaagagctcatcatcaggtcgatgcagtgatgtccatttgtgagagtattaggaatgtaaagttgtgtttgtg 2659709  T
Q  198 taacaacggtagaagttgataaaatcgaggggattggagaatc 240  Q
    |||||||||||||||| || ||||| || ||||||||||||||    
T  2659710 taacaacggtagaagtagagaaaattgaagggattggagaatc 2659752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 172 - 350
Target Start/End: Complemental strand, 2476159 - 2475981
Alignment:
Q  172 attaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaa 271  Q
    ||||||||||||||||||||| |||||||||||||| ||||| || || |  || |||||||| |||||||||  ||||||||||    |  |||| | |    
T  2476159 attaggagggtaaagttgtgtctgtgtaacaacggttgaagtagaaaatacggatgggattggcgaatcatacagaactaactcacgtgatatgttacga 2476060  T
Q  272 gaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaat 350  Q
     |  ||  |||||||| ||||||||| ||||| ||||||||||| |||||||||||| | ||||||| |||||||||||    
T  2476059 cattttcgcatgaggtggtggcgctttgttgacaattgaaggtgtttctttgcgaatttaggatcagaaataagagaat 2475981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 2501844 - 2501751
Alignment:
Q  1 atcatatccaaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattctacaacaaataagaa 94  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||| | |||| || ||||| |||||||||| ||| |||| |||||||||    
T  2501844 atcatatccaaagcttagtgatgtccattcgtgattctccaaaggaggcaataacttaaactttgtaatggaagggttccacaagaaataagaa 2501751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 113 - 225
Target Start/End: Original strand, 9566320 - 9566432
Alignment:
Q  113 caaaagatgccatcgcaagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaag 212  Q
    |||||||||||||||||||||||| ||| ||||||| |||| | || |||| | | | |||| ||||||||||||||||| ||||||| ||| |||||||    
T  9566320 caaaagatgccatcgcaagagcacgttaagtccacatagttgcgtctaattctgatactattgggagggtaaagttgtgtctgtgtaaaaaccgtagaag 9566419  T
Q  213 ttgataaaatcga 225  Q
    | |||||||||||    
T  9566420 tagataaaatcga 9566432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 38 - 328
Target Start/End: Complemental strand, 2474749 - 2474463
Alignment:
Q  38 tccaaaggaggaagtaacgtatactttctaatggaaggattctacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagcaca 137  Q
    ||||||||||| | |||| || | |||| ||||||||| ||| |||| |||||||| ||| |||| ||| ||| ||||||||||||||| ||||||||||    
T  2474749 tccaaaggaggcaataacttaaattttccaatggaagggttccacaa-aaataagagccatctttgagcgtgccgcaaaagatgccatcacaagagcaca 2474651  T
Q  138 ttacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggaga 237  Q
      |||    |  |||||  || || | | | | |||||||||||||||||||||| ||| |||  |   ||||  | || |||| |||||| ||||| ||    
T  2474650 acacgaaggcgtagttatgtccaagtttgatactattaggagggtaaagttgtgtctgtataatga---tagacttagaaaaaagcgagggtattgggga 2474554  T
Q  238 atcatactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaat 328  Q
    |||||||| |||  ||||| | |||| ||| | ||| |||| |||||||| |||||||||  |||||||||||||||| ||||||||||||    
T  2474553 atcatactgaacgtactcacctaagtagttgctagatgttaccatgaggtggtggcgcttgtttgataattgaaggtgtttctttgcgaat 2474463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 275 - 338
Target Start/End: Original strand, 7334931 - 7334994
Alignment:
Q  275 gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcag 338  Q
    |||| |||||||| ||||||||| ||||| |||||||||||||||||||||||| |||||||||    
T  7334931 gttaccatgaggtggtggcgctttgttgacaattgaaggtgcttctttgcgaattttggatcag 7334994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 2630843 - 2630771
Alignment:
Q  172 attaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatac 244  Q
    ||||||||||||||||||||| |||| ||||| ||| ||||| || |||| ||| ||||||||||||||||||    
T  2630843 attaggagggtaaagttgtgtttgtgcaacaatggttgaagtagaaaaaagcgaagggattggagaatcatac 2630771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 2635294 - 2635214
Alignment:
Q  62 tttctaatggaaggattctacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagcacattacg 142  Q
    |||||||||||||| ||| |||  ||||||||||||||||| ||||  | || |||||||||||||||||||||| |||||    
T  2635294 tttctaatggaagggttccacagaaaataagaaccagctttgagcacaccgctaaagatgccatcgcaagagcacgttacg 2635214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 755292 - 755367
Alignment:
Q  275 gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaat 350  Q
    |||| |||||||| ||||||||| ||||| |||||||| || || ||||||||| ||||||||| |||||||||||    
T  755292 gttaacatgaggtggtggcgctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaat 755367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 338
Target Start/End: Original strand, 7325065 - 7325120
Alignment:
Q  283 gaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcag 338  Q
    ||||| |||||||||||||||||||||||| || ||||||||||| || |||||||    
T  7325065 gaggtggtggcgcttagttgataattgaagatgtttctttgcgaaagtgggatcag 7325120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 9566482 - 9566557
Alignment:
Q  275 gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaat 350  Q
    |||| ||||||||  |||||||| ||||| |||||||| || || ||||||||| ||||||||| |||||||||||    
T  9566482 gttaacatgaggtgatggcgctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaat 9566557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 755176 - 755246
Alignment:
Q  171 tattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatca 241  Q
    |||| ||||||||||||||||| ||||||| ||| |||||||| || ||||| || |||||||| ||||||    
T  755176 tattgggagggtaaagttgtgtctgtgtaaaaacagtagaagtagaaaaaatggatgggattggggaatca 755246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 2644902 - 2644972
Alignment:
Q  174 taggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatac 244  Q
    ||||| ||||||||||||| |||||||||| ||||||||| || |||   || |||||||| |||||||||    
T  2644902 taggaaggtaaagttgtgtttgtgtaacaatggtagaagtagaaaaaggtgaagggattggggaatcatac 2644972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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