View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13983_high_16 (Length: 364)
Name: NF13983_high_16
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13983_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 341
Target Start/End: Complemental strand, 2798117 - 2797783
Alignment:
| Q |
7 |
agaatatactataaactcacaagtccaagttactctagaaacatcaacacatttgcgtcaagnnnnnnngaaacatcaacacacaattcacagcatatgt |
106 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2798117 |
agaaaatactataaactcacaagtccaagttactctagaaacatcaacacatttgcgtcaagaaaaaaagaaacatcaacacacaattcacagcatatgt |
2798018 |
T |
|
| Q |
107 |
accatctttggcccgaatttctgcatgctcaataaatgtacaagattagatacggagacaatctaaataaaccatccattttttgacttcaacttcacat |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2798017 |
accatctttggcccgaatttctgcatgctcaataaatgtacaagaataaataaggagacaatctaaataaaccatccattttttgacttcaacttcacat |
2797918 |
T |
|
| Q |
207 |
ctcattcaaataataattattggcgtctttccgcctgcatcgaagtctatggttcgcagacaacgtttcagtgtctatgcgctttaagttgaaatcatgc |
306 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2797917 |
cacattcaaataataattattggcgtctttccgcctgcatcgaagtctatggttcgcagacaacgtttcagtgtctatgcgctttaagttgaaatcatgc |
2797818 |
T |
|
| Q |
307 |
aagcgatcctgcaagtacgtcgtgtaaaacaaagt |
341 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
2797817 |
aagcgatcctgcaagtacgtcgtgtaaaacaaagt |
2797783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 2873977 - 2874282
Alignment:
| Q |
7 |
agaatatactataaactcacaagtccaagttactctagaaacatcaacacatttgcgtcaagnnnnnnngaaacatcaacacacaattcacagcatatgt |
106 |
Q |
| |
|
|||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2873977 |
agaaaatactataaactgacaagtctaagttactctagaaacatcaacacatttgcgtcaagaaaaaaagaaacatcaacacacaattcacagcatatgt |
2874076 |
T |
|
| Q |
107 |
accatctttggcccgaatttctgcatgctcaataaatgtacaagattagatacggagacaatctaaataaaccatccattttttgacttcaacttcacat |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2874077 |
accatctttggcccgaatttctgcatgctcaataaatgtacaagaatacatacggagacaatctaaataaaccatccattttttgacttcaacttaacat |
2874176 |
T |
|
| Q |
207 |
ctcattcaaat-----aataattattggcgtctttccgcctgcatcgaagtctatggttcgcagacaacgtttcagtgtctatgcgctttaagttgaaat |
301 |
Q |
| |
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| || || || | |||| |||| | ||||| ||||| | |||||| | ||||||| |||||||| ||||||||||||||||||||||| || |
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| T |
2874177 |
catatgcacatgccaggacaattcttggagagtttcctcctgcttgcaagtctccgtttcgcagccaacgttttagtgtctatgcgctttaagttgagat |
2874276 |
T |
|
| Q |
302 |
catgca |
307 |
Q |
| |
|
| |||| |
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|
| T |
2874277 |
cctgca |
2874282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 76 - 298
Target Start/End: Complemental strand, 3160966 - 3160739
Alignment:
| Q |
76 |
gaaacatcaacacacaattcacagcatatgtaccatctttggcccgaatttctgcatgctcaataaatgtacaagattagatacggagacaatctaaata |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3160966 |
gaaacatcaacacacaattcacagcatatgtaccatctttggcccgaatttctgcatgctcaataaatgtacaagattagatatggagacaatctaaata |
3160867 |
T |
|
| Q |
176 |
aaccatccattttttgacttcaacttcacatctcattcaaat-----aataattattggcgtctttccgcctgcatcgaagtctatggttcgcagacaac |
270 |
Q |
| |
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|||||||||||||||||||||||||| ||||| || ||||| | |||| |||| | ||||| ||||||| |||| | ||||||||| |||| |
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| T |
3160866 |
aaccatccattttttgacttcaacttgacatcatatgcaaatgccaggacaattcttggagagtttcctcctgcatgcaagtttccggttcgcagccaac |
3160767 |
T |
|
| Q |
271 |
gtttcagtgtctatgcgctttaagttga |
298 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
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|
| T |
3160766 |
gttttagtgtctatgcgctttaagttga |
3160739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 76 - 298
Target Start/End: Original strand, 2847230 - 2847457
Alignment:
| Q |
76 |
gaaacatcaacacacaattcacagcatatgtaccatctttggcccgaatttctgcatgctcaataaatgtacaagattagatacggagacaatctaaata |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
2847230 |
gaaacatcaacacacaattcacagcatatgtaccatctttggcccgaatttctgcatgctcaataaatgtacaagattagatatggagacaatctaaata |
2847329 |
T |
|
| Q |
176 |
aaccatccattttttgacttcaacttcacatctcattcaaat-----aataattattggcgtctttccgcctgcatcgaagtctatggttcgcagacaac |
270 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||||| | |||| |||| | ||||| |||||| |||| | ||||||||| |||| |
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|
| T |
2847330 |
aaccatccattttttgacttcaacttgacatcatatgcaaatgccaggacaattcttggagagtttccttctgcatgcaagtttccggttcgcagccaac |
2847429 |
T |
|
| Q |
271 |
gtttcagtgtctatgcgctttaagttga |
298 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
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| T |
2847430 |
gttttagtgtctatgcgctttaagttga |
2847457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 3146349 - 3146180
Alignment:
| Q |
7 |
agaatatactataaactcacaagtccaagttactctagaaacatcaacacatttgcgtcaagnnnnnnngaaacatcaacacacaattcacagcatatgt |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
3146349 |
agaaaatactataaactcacaagtccaagttactctagaaacatcaacacatttgcgtcaagaaaaaaacaaacatcaacacacaattcacatcatatgt |
3146250 |
T |
|
| Q |
107 |
accatctttggcccgaatttctgcatgctcaataaatgtacaagattagatacggagacaatctaaataa |
176 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||| |
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|
| T |
3146249 |
accatctttggcccgaatttctccatgctcaataaatgtacaagattagatgcggagacaatttaaataa |
3146180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 2888237 - 2888406
Alignment:
| Q |
7 |
agaatatactataaactcacaagtccaagttactctagaaacatcaacacatttgcgtcaagnnnnnnngaaacatcaacacacaattcacagcatatgt |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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|
| T |
2888237 |
agaaaatactataaactcacaagtccaagttactctagaaacatcaacacatttgcgtcaagaaaaaaacaaacatcaacacacaattcacatcatatgt |
2888336 |
T |
|
| Q |
107 |
accatctttggcccgaatttctgcatgctcaataaatgtacaagattagatacggagacaatctaaataa |
176 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||| ||||||| |
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|
| T |
2888337 |
accatctttggcccgaatttctccatgctcaataaatgtacaagattagatgcgaagacaatttaaataa |
2888406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 3161003 - 3160953
Alignment:
| Q |
7 |
agaatatactataaactcacaagtccaagttactctagaaacatcaacaca |
57 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3161003 |
agaaaatactataaactcacaagtctaagttactctagaaacatcaacaca |
3160953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 2847193 - 2847243
Alignment:
| Q |
7 |
agaatatactataaactcacaagtccaagttactctagaaacatcaacaca |
57 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
2847193 |
agaaaatactataaactcacatgtctaagttactctagaaacatcaacaca |
2847243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 298
Target Start/End: Original strand, 2888860 - 2888993
Alignment:
| Q |
170 |
taaataaaccatccattttttgacttcaacttcacatctcattcaaat-----aataattattggcgtctttccgcctgcatcgaagtctatggttcgca |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| || ||||| | |||| |||| | ||||| ||||||| |||| | ||||||| |
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|
| T |
2888860 |
taaataaaccatccattttttgacttcaacttgacatcatatgcaaatgccaggacaattcttggactgtttcctcctgcatgaaagtttcctgttcgca |
2888959 |
T |
|
| Q |
265 |
gacaacgtttcagtgtctatgcgctttaagttga |
298 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||| |
|
|
| T |
2888960 |
gccaacgttttagtgtctatgcgctttaagttga |
2888993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 298
Target Start/End: Complemental strand, 3145909 - 3145868
Alignment:
| Q |
257 |
ggttcgcagacaacgtttcagtgtctatgcgctttaagttga |
298 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
3145909 |
ggttcgcagccaacgttttagtgtctatgcgctttaagttga |
3145868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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