View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13983_high_22 (Length: 239)
Name: NF13983_high_22
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13983_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 42030097 - 42029898
Alignment:
| Q |
17 |
ccttaacctgtcaaaagtggcaattctctttcnnnnnnnnggtgatttttagagggaaaaaataaatgtaacaaacatatcctatacctcaactggtaat |
116 |
Q |
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| T |
42030097 |
ccttaacctgtcaaaagtggcaattctctttcaaaaaa--ggtgatttttagagggaaaaaa--aatgtaacaaacatatcctatacctcaactggtaat |
42030002 |
T |
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| Q |
117 |
ttannnnnnnnnnnnncatgataaaaaatttattaaaattaaagaagaatgacgaagtgccaaagatgatttcatgttttcaaatttcaattagtctgct |
216 |
Q |
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| T |
42030001 |
ttatttttatttttttcatgataaaaaatttattaaaattaaagaagaatgacgaagtgccaaagatgatttcatgttttcaaatttcaattagtctgct |
42029902 |
T |
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