View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13983_high_24 (Length: 238)
Name: NF13983_high_24
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13983_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 12800464 - 12800252
Alignment:
| Q |
9 |
agcagcagagatacaataactagcaaacccaaaccggttttgatttatagcatcagcagcttgtggaagagtgtacttcacaactggtatatatgattca |
108 |
Q |
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| T |
12800464 |
agcatcagaaatacaataactagcaaacccaaaccggttttgatttatagcatcagcagcttgtggaagagtgtacttcacaactggtatatatgattca |
12800365 |
T |
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| Q |
109 |
gcacaaaatgccaatgctttttccatttcacgatctgtagttttcttgatcaagctttcaatgtagttcaatgtgtcacttgcatttgtgagaatgttgt |
208 |
Q |
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| T |
12800364 |
gcacaaaatgccaatgctttttccatttcacgatctgtagttttcttgatcaagctttcaatgtagttcaatgtgtcacttgcatttgtgagaatgttgt |
12800265 |
T |
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| Q |
209 |
ttaccattactag |
221 |
Q |
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||||||||||||| |
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| T |
12800264 |
ttaccattactag |
12800252 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 50631947 - 50632017
Alignment:
| Q |
53 |
ttatagcatcagcagcttgtggaagagtgtacttcacaactggtatatatgattcagcacaaaatgccaat |
123 |
Q |
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| T |
50631947 |
ttatagcatcagctgcttgtggaagaatgtatttcacaacaggtatgtatgactcagcacaaaaagccaat |
50632017 |
T |
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