View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13983_high_5 (Length: 513)

Name: NF13983_high_5
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13983_high_5
NF13983_high_5
[»] chr4 (4 HSPs)
chr4 (125-274)||(53239645-53239795)
chr4 (10-116)||(53239498-53239604)
chr4 (428-495)||(53239926-53239993)
chr4 (353-406)||(53239874-53239927)
[»] chr1 (14 HSPs)
chr1 (365-495)||(2170927-2171057)
chr1 (125-274)||(28851745-28851894)
chr1 (10-116)||(2170614-2170720)
chr1 (353-483)||(28851973-28852103)
chr1 (10-116)||(28851598-28851704)
chr1 (355-495)||(39481996-39482136)
chr1 (125-274)||(21401732-21401881)
chr1 (125-174)||(2170761-2170810)
chr1 (187-274)||(39482217-39482305)
chr1 (355-422)||(21401582-21401649)
chr1 (386-484)||(6843530-6843628)
chr1 (236-274)||(2170793-2170831)
chr1 (51-116)||(21401922-21401987)
chr1 (432-484)||(21401076-21401127)
[»] chr6 (2 HSPs)
chr6 (355-484)||(10461568-10461697)
chr6 (187-274)||(10461400-10461488)
[»] chr7 (13 HSPs)
chr7 (357-495)||(37502697-37502834)
chr7 (355-474)||(32248241-32248360)
chr7 (357-460)||(47814731-47814834)
chr7 (357-474)||(33427277-33427390)
chr7 (187-274)||(32248441-32248529)
chr7 (10-116)||(33426959-33427069)
chr7 (10-116)||(47815043-47815150)
chr7 (390-443)||(8655850-8655903)
chr7 (222-274)||(37502917-37502969)
chr7 (147-197)||(37502975-37503025)
chr7 (203-274)||(33427123-33427194)
chr7 (203-258)||(47814939-47814994)
chr7 (36-95)||(37503089-37503146)
[»] chr2 (3 HSPs)
chr2 (357-484)||(18747786-18747913)
chr2 (147-236)||(18748931-18749022)
chr2 (386-484)||(4867406-4867503)
[»] chr8 (5 HSPs)
chr8 (359-484)||(34872093-34872218)
chr8 (187-273)||(31371662-31371749)
chr8 (386-495)||(31371442-31371551)
chr8 (125-273)||(34872304-34872435)
chr8 (35-116)||(34872475-34872557)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 4e-70; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 125 - 274
Target Start/End: Original strand, 53239645 - 53239795
Alignment:
Q  125 aagaatgttattaaaggaagccttgttcaaagatgtttgagacaaaattggtacatatatgaagttttgtgttcccag-aagaaaaagaggaggctacgt 223  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  53239645 aagaatgttattaaaggaaaccttgttcaaagatgtttgagacaaaattggtacatatatgaagttttgtgttcccagaaagaaaaagaggaggctacgt 53239744  T
Q  224 ttcagatgatgaatgttggagagaaaattgtgatggtggttaatgatttgg 274  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  53239745 ttcagatgatgaatgttggagagaaaattgtgacggtggttaatgatttgg 53239795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 53239498 - 53239604
Alignment:
Q  10 ataagaaaaaacaaaattgtgcgggtaaaatacaagaaaataggtcacctacaagaaagccatgccatcaaattttcaattaaaattcattaagcaaaaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  53239498 ataagaaaaaacaaaattgtgcgggtaaaatacaagaaaataggtcacctgcaagaaagccatgccatcaatttttcaattaaaattcattaagcaaaaa 53239597  T
Q  110 taatggt 116  Q
    |||||||    
T  53239598 taatggt 53239604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 428 - 495
Target Start/End: Original strand, 53239926 - 53239993
Alignment:
Q  428 attattctattggttaaacatttgagagtaccaaaacactcaattttatttggagtatcaaagaaatt 495  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  53239926 attattctattgattaaacatttgagagtaccaaaacactcaattttatttggagtatcatagaaatt 53239993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 406
Target Start/End: Original strand, 53239874 - 53239927
Alignment:
Q  353 atagaagtgtaccaaaactctttctcttaagttaatctttaataatgttgacat 406  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  53239874 atagaagtgtaccaaaactctttctcttaagtcaatctttaataatgttgacat 53239927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 6e-63; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 365 - 495
Target Start/End: Original strand, 2170927 - 2171057
Alignment:
Q  365 caaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgagagtaccaaaac 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2170927 caaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatgacattattctattggttaaacatttgagagtaccaaaac 2171026  T
Q  465 actcaattttatttggagtatcaaagaaatt 495  Q
    ||||||||||||||||||||||| |||||||    
T  2171027 actcaattttatttggagtatcatagaaatt 2171057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 125 - 274
Target Start/End: Original strand, 28851745 - 28851894
Alignment:
Q  125 aagaatgttattaaaggaagccttgttcaaagatgtttgagacaaaattggtacatatatgaagttttgtgttccc-agaagaaaaagaggaggctacgt 223  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||  |||||    
T  28851745 aagaatgttattaaaggaagccttgtttaaagatgtttgagataaaattggtacatatatgaagttttgtgttcccaaaaagaaaaagaggagtttacgt 28851844  T
Q  224 ttcagatgatgaatgttggagagaaaattgtgatggtggttaatgatttgg 274  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  28851845 ttca-atgataaatgttggagagaaaattgtgatagtggttaatgatttgg 28851894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 2170614 - 2170720
Alignment:
Q  10 ataagaaaaaacaaaattgtgcgggtaaaatacaagaaaataggtcacctacaagaaagccatgccatcaaattttcaattaaaattcattaagcaaaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2170614 ataagaaaaaacaaaattgtgcgggtaaaatacaagaaaataggtcacctacaagaaagccatgccatcaatttttcaattaaaattcattaagcaaaaa 2170713  T
Q  110 taatggt 116  Q
    |||||||    
T  2170714 taatggt 2170720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 353 - 483
Target Start/End: Original strand, 28851973 - 28852103
Alignment:
Q  353 atagaagtgtaccaaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttga 452  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||| |||||||||||| |||||| ||||||||||| ||||||||||| |    
T  28851973 atagaagtgtaccaaaactctttttcttaagtcaatctttaataatattgacatggatcatttaattaaaatgacattattctattagttaaacatttaa 28852072  T
Q  453 gagtaccaaaacactcaattttatttggagt 483  Q
    |||||||||||||||||||||||||| ||||    
T  28852073 gagtaccaaaacactcaattttatttagagt 28852103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 28851598 - 28851704
Alignment:
Q  10 ataagaaaaaacaaaattgtgcgggtaaaatacaagaaaataggtcacctacaagaaagccatgccatcaaattttcaattaaaattcattaagcaaaaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |   ||||||| |||||||||||||||||||||||| |||    
T  28851598 ataagaaaaaacaaaattgtgcgggtaaaatacaagaaaataagtcacctacaagaaagtccccccatcaatttttcaattaaaattcattaagcagaaa 28851697  T
Q  110 taatggt 116  Q
    |||||||    
T  28851698 taatggt 28851704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 355 - 495
Target Start/End: Complemental strand, 39482136 - 39481996
Alignment:
Q  355 agaagtgtaccaaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgaga 454  Q
    |||||||||||||||||||||| ||| | | ||||||||||||||||||||  ||||||||||||||||||| | | ||||||| |||||||||||||||    
T  39482136 agaagtgtaccaaaactctttcccttcaatcaatctttaataatgttgacaaggatcatttaattgaaatgacacttttctattagttaaacatttgaga 39482037  T
Q  455 gtaccaaaacactcaattttatttggagtatcaaagaaatt 495  Q
    ||||||||||||| |||||| | | ||||| || |||||||    
T  39482036 gtaccaaaacacttaattttgtctagagtaccatagaaatt 39481996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 125 - 274
Target Start/End: Complemental strand, 21401881 - 21401732
Alignment:
Q  125 aagaatgttattaaaggaagccttgttcaaagatgtttgagacaaaattggtacatatatgaagttttgtgttcccagaa--gaaaaagaggaggctacg 222  Q
    ||||||| ||||||||||||| |||| |||| ||||||||||||||||| |||  || ||||||||||||||||| | ||  ||||||||||| | |||     
T  21401881 aagaatgctattaaaggaagctttgtacaaatatgtttgagacaaaattcgta--tagatgaagttttgtgttcctaaaaaggaaaaagaggaagttaca 21401784  T
Q  223 tttcagatgatgaatgttggagagaaaattgtgatggtggttaatgatttgg 274  Q
    ||| |||||||||| |||||| ||||||||||||||   |||||||||||||    
T  21401783 tttaagatgatgaaggttggaaagaaaattgtgatgacagttaatgatttgg 21401732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 2170761 - 2170810
Alignment:
Q  125 aagaatgttattaaaggaagccttgttcaaagatgtttgagacaaaattg 174  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2170761 aagaatgttattaaaggaagccttgttcaaagatgtttgagagaaaattg 2170810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 274
Target Start/End: Complemental strand, 39482305 - 39482217
Alignment:
Q  187 agttttgtgttcccagaa-gaaaaagaggaggctacgtttcagatgatgaatgttggagagaaaattgtgatggtggttaatgatttgg 274  Q
    |||||||||||| ||||| |||||||| |||| || || ||||||| |||||| || |||||||||||| |||||||||||||||||||    
T  39482305 agttttgtgttcgcagaaagaaaaagatgaggttaagtctcagatgttgaatgatgaagagaaaattgtaatggtggttaatgatttgg 39482217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 21401649 - 21401582
Alignment:
Q  355 agaagtgtaccaaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaa 422  Q
    |||||||||||||||||||||  ||||||||| |||||||||||  |||||| |||||||||||||||    
T  21401649 agaagtgtaccaaaactcttttccttaagttagtctttaataatcctgacattgatcatttaattgaa 21401582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 386 - 484
Target Start/End: Complemental strand, 6843628 - 6843530
Alignment:
Q  386 aatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgagagtaccaaaacactcaattttatttggagta 484  Q
    ||||| |||||||| |||||| ||||||||||||||||||    | || ||||| | ||||||||||||||||| |||||||||||||| ||| |||||    
T  6843628 aatctctaataatgctgacatggatcatttaattgaaatgtcgctcttttattgatcaaacatttgagagtaccgaaacactcaattttgtttagagta 6843530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 274
Target Start/End: Original strand, 2170793 - 2170831
Alignment:
Q  236 atgttggagagaaaattgtgatggtggttaatgatttgg 274  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  2170793 atgtttgagagaaaattgtgatggtggttaatgatttgg 2170831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 21401987 - 21401922
Alignment:
Q  51 aggtcacctacaagaaagccatgccatcaaattttcaattaaaattcattaagcaaaaataatggt 116  Q
    ||||||| |||||||||||||||||||||| |||  | |||||||||  || |||||| |||||||    
T  21401987 aggtcacgtacaagaaagccatgccatcaattttctatttaaaattcggtatgcaaaattaatggt 21401922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 484
Target Start/End: Complemental strand, 21401127 - 21401076
Alignment:
Q  432 ttctattggttaaacatttgagagtaccaaaacactcaattttatttggagta 484  Q
    |||||||||||||| ||| ||| ||| |||||||||||||||| |||||||||    
T  21401127 ttctattggttaaatattcgag-gtatcaaaacactcaattttgtttggagta 21401076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 355 - 484
Target Start/End: Original strand, 10461568 - 10461697
Alignment:
Q  355 agaagtgtaccaaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgaga 454  Q
    |||||||||||||||||||||| ||||| | ||||||||||||||||||||| ||||||||||||||||||| | | |||||||||||||| ||||||||    
T  10461568 agaagtgtaccaaaactctttcccttaaatcaatctttaataatgttgacatggatcatttaattgaaatgacacttttctattggttaaatatttgaga 10461667  T
Q  455 gtaccaaaacactcaattttatttggagta 484  Q
    |||||||||||||||||||| |||||||||    
T  10461668 gtaccaaaacactcaattttgtttggagta 10461697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 187 - 274
Target Start/End: Original strand, 10461400 - 10461488
Alignment:
Q  187 agttttgtgttcccagaa-gaaaaagaggaggctacgtttcagatgatgaatgttggagagaaaattgtgatggtggttaatgatttgg 274  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||||| ||| || |||||||||||| |||||||||||||||||||    
T  10461400 agttttgtgttcccagaaagaaaaagaggaggttaagtttcagatgatgtatgatgaagagaaaattgtaatggtggttaatgatttgg 10461488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 357 - 495
Target Start/End: Complemental strand, 37502834 - 37502697
Alignment:
Q  357 aagtgtaccaaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatga-tattattctattggttaaacatttgagag 455  Q
    ||||||||||||||||||| || ||||| ||| |||||||||| |||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  37502834 aagtgtaccaaaactcttt-tcataagtcaatatttaataatgctgacatggatcatttaattgaaatgactatt-ttctattggttaaacatttgagag 37502737  T
Q  456 taccaaaacactcaattttatttggagtatcaaagaaatt 495  Q
    ||||||||||||||||||| ||||||||| || |||||||    
T  37502736 taccaaaacactcaattttgtttggagtaccatagaaatt 37502697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 355 - 474
Target Start/End: Complemental strand, 32248360 - 32248241
Alignment:
Q  355 agaagtgtaccaaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgaga 454  Q
    ||||||||||||||||||||||  |||| | ||||||||||||||||||||| |||| || ||||||||| | | | |||||||||||||||||||||||    
T  32248360 agaagtgtaccaaaactctttcctttaaatcaatctttaataatgttgacatggatctttgaattgaaataacacttttctattggttaaacatttgaga 32248261  T
Q  455 gtaccaaaacactcaatttt 474  Q
    ||||||||||||||||||||    
T  32248260 gtaccaaaacactcaatttt 32248241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 357 - 460
Target Start/End: Complemental strand, 47814834 - 47814731
Alignment:
Q  357 aagtgtaccaaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgagagt 456  Q
    |||||||| ||||||||||| || |||| |||||||||||||||| |||| ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  47814834 aagtgtacaaaaactctttccctcaagtcaatctttaataatgttaacatggatcatttaattgaaatgacactattctattggttaaacatttgagagt 47814735  T
Q  457 acca 460  Q
    ||||    
T  47814734 acca 47814731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 357 - 474
Target Start/End: Original strand, 33427277 - 33427390
Alignment:
Q  357 aagtgtaccaaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgagagt 456  Q
    |||||||||||||||||||| || |||| |||| |||||||||||| ||| ||||||||||||||||||   ||||  ||||||||||| ||||||||||    
T  33427277 aagtgtaccaaaactctttccctcaagtcaatccttaataatgttggcattgatcatttaattgaaatg--gttat--tattggttaaatatttgagagt 33427372  T
Q  457 accaaaacactcaatttt 474  Q
    ||||||||||||||||||    
T  33427373 accaaaacactcaatttt 33427390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 187 - 274
Target Start/End: Complemental strand, 32248529 - 32248441
Alignment:
Q  187 agttttgtgttcccagaa-gaaaaagaggaggctacgtttcagatgatgaatgttggagagaaaattgtgatggtggttaatgatttgg 274  Q
    ||||||||||||| |||| ||||||||||| | || ||||||||||||||||| || |||||||||||| |||||||||||||||||||    
T  32248529 agttttgtgttcctagaaagaaaaagaggaagttaagtttcagatgatgaatgatgaagagaaaattgtaatggtggttaatgatttgg 32248441  T

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Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 33426959 - 33427069
Alignment:
Q  10 ataagaaaaaaca--aaattgtgcgggtaaaatacaagaaaata-ggtcacctacaagaaagccatgccatcaaatttt-caattaaaattcattaagca 105  Q
    |||||||||||||  ||||||| |  |||||||||||||||| | |||||| || ||||||||||||||||||| |||| ||||||||||||| ||||||    
T  33426959 ataagaaaaaacataaaattgtaccagtaaaatacaagaaaaaaaggtcacgtataagaaagccatgccatcaattttttcaattaaaattcagtaagca 33427058  T
Q  106 aaaataatggt 116  Q
    ||| |||||||    
T  33427059 aaattaatggt 33427069  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 47815150 - 47815043
Alignment:
Q  10 ataagaaaaaaca--aaattgtgcgggtaaaatacaagaaaataggtcacctacaagaaagccatgccatcaaatttt-caattaaaattcattaagcaa 106  Q
    |||||||||||||  ||||||| |  |||||||||||||||| ||||||| || |||||||||||  |||||| |||| ||||||||||||| |||||||    
T  47815150 ataagaaaaaacataaaattgtaccagtaaaatacaagaaaaaaggtcacgtataagaaagccat--catcaattttttcaattaaaattcagtaagcaa 47815053  T
Q  107 aaataatggt 116  Q
    || |||||||    
T  47815052 aattaatggt 47815043  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 8655903 - 8655850
Alignment:
Q  390 tttaataatgttgacatagatcatttaattgaaatgatattattctattggtta 443  Q
    |||||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  8655903 tttaataatgctgacatagatcatttaattgaaatggcattattctattggtta 8655850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 37502969 - 37502917
Alignment:
Q  222 gtttcagatgatgaatgttggagagaaaattgtgatggtggttaatgatttgg 274  Q
    |||| |||||||||| |||||||||||||||||||||| ||||||||||||||    
T  37502969 gtttgagatgatgaaggttggagagaaaattgtgatggcggttaatgatttgg 37502917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 37503025 - 37502975
Alignment:
Q  147 ttgttcaaagatgtttgagacaaaattggtacatatatgaagttttgtgtt 197  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||||||    
T  37503025 ttgttcaaagatgtttgagatgaaattggtacatagatgaagttttgtgtt 37502975  T

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Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 203 - 274
Target Start/End: Original strand, 33427123 - 33427194
Alignment:
Q  203 aagaaaaagaggaggctacgtttcagatgatgaatgttggagagaaaattgtgatggtggttaatgatttgg 274  Q
    ||||||||||| ||  ||||||| ||| ||||||||||||||||||||||| ||||   |||||||||||||    
T  33427123 aagaaaaagagaagattacgtttgagaagatgaatgttggagagaaaattgcgatgaccgttaatgatttgg 33427194  T

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Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 47814994 - 47814939
Alignment:
Q  203 aagaaaaagaggaggctacgtttcagatgatgaatgttggagagaaaattgtgatg 258  Q
    ||||||||||| ||| ||||||| ||| ||||||||||||||||||||||| ||||    
T  47814994 aagaaaaagagaaggttacgtttgagaagatgaatgttggagagaaaattgcgatg 47814939  T

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Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 37503146 - 37503089
Alignment:
Q  36 aaaatacaagaaaataggtcacctacaagaaagccatgccatcaaattttcaattaaaat 95  Q
    |||||||||||||| |||||||  ||||||||||||||||||||| ||| || |||||||    
T  37503146 aaaatacaagaaaaaaggtcac--acaagaaagccatgccatcaattttccatttaaaat 37503089  T

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Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 357 - 484
Target Start/End: Complemental strand, 18747913 - 18747786
Alignment:
Q  357 aagtgtaccaaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgagagt 456  Q
    ||||||||||||||| | |||||||||| ||| |||||||||| |||||| ||| ||||||||||||||| | | |||||||||||||||||||||||||    
T  18747913 aagtgtaccaaaactatctctcttaagtcaatatttaataatgctgacatggataatttaattgaaatgacacttttctattggttaaacatttgagagt 18747814  T
Q  457 accaaaacactcaattttatttggagta 484  Q
    |||||||||||| ||||| |||||||||    
T  18747813 accaaaacactcgattttgtttggagta 18747786  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 18749022 - 18748931
Alignment:
Q  147 ttgttcaaagatgtttgagacaaaattggtacatatatgaagttttgtgttcccagaa--gaaaaagaggaggctacgtttcagatgatgaa 236  Q
    ||||| ||||||||||||||  |||||||||||||  |||||| |||||||||| |||  |||||||| |||| ||| ||| ||||||||||    
T  18749022 ttgtttaaagatgtttgagatgaaattggtacataggtgaagtcttgtgttcccggaaaggaaaaagaagaggttacttttgagatgatgaa 18748931  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 484
Target Start/End: Complemental strand, 4867503 - 4867406
Alignment:
Q  386 aatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgagagtaccaaaacactcaattttatttggagta 484  Q
    ||||| |||||||| ||| || ||||||||||||||||| || || || | ||||| ||| ||| | ||||| | ||||||||||||||||||||||||    
T  4867503 aatctctaataatgctgatatggatcatttaattgaaat-atctttttttgttggtcaaatattagggagtatcgaaacactcaattttatttggagta 4867406  T

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Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 359 - 484
Target Start/End: Complemental strand, 34872218 - 34872093
Alignment:
Q  359 gtgtaccaaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgagagtac 458  Q
    ||||||||||||| |||  ||||||| ||| |||||||||| |||||| |||| |||||||||||||| | | ||||||| ||||||||||||||||||     
T  34872218 gtgtaccaaaactattttccttaagtcaatttttaataatgctgacatcgatcgtttaattgaaatgacactcttctattagttaaacatttgagagtaa 34872119  T
Q  459 caaaacactcaattttatttggagta 484  Q
    ||||||||||||||||  ||||||||    
T  34872118 caaaacactcaattttggttggagta 34872093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 187 - 273
Target Start/End: Complemental strand, 31371749 - 31371662
Alignment:
Q  187 agttttgtgttcccag-aagaaaaagaggaggctacgtttcagatgatgaatgttggagagaaaattgtgatggtggttaatgatttg 273  Q
    |||||||||||||||| |||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31371749 agttttgtgttcccagcaagaaaaaaaggaggttaccttacagatgatgaatgttggagagaaaattgtgatggtggttaatgatttg 31371662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 386 - 495
Target Start/End: Complemental strand, 31371551 - 31371442
Alignment:
Q  386 aatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgagagtaccaaaacactcaattttatttggagtat 485  Q
    |||||||||||||| | ||||  || ||||||||||||||| | | || ||||||||||| ||||||||||| ||||||||||||||||||||| ||||     
T  31371551 aatctttaataatgctaacatgaattatttaattgaaatgacacttttatattggttaaatatttgagagtatcaaaacactcaattttatttgaagtac 31371452  T
Q  486 caaagaaatt 495  Q
    || |||||||    
T  31371451 catagaaatt 31371442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 273
Target Start/End: Complemental strand, 34872435 - 34872304
Alignment:
Q  125 aagaatgttattaaaggaagccttgttcaaagatgtttgagacaaaattggtacatatatgaagttttgtgttcccagaag-aaaaagaggaggctacgt 223  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||| ||||     ||||||||||||||||| ||  |||||||               
T  34872435 aagaatgttattaaaggaaattttgttcaaagatgtttgagacaaaattgatacaa----gaagttttgtgttcccaaaaataaaaaga----------- 34872351  T
Q  224 ttcagatgatgaatgttggagagaaaattgtgatggtggttaatgatttg 273  Q
       | ||||||||||||||||||||||||||||||| |||||||||||||    
T  34872350 ---aaatgatgaatgttggagagaaaattgtgatggcggttaatgatttg 34872304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 34872557 - 34872475
Alignment:
Q  35 taaaatacaagaaaataggtcacctaca-agaaagccatgccatcaaattttcaattaaaattcattaagcaaaaataatggt 116  Q
    |||||||| |||||| ||||||| |||| | |||||||||||||||| ||| ||||||||||||| ||| ||||| |||||||    
T  34872557 taaaatactagaaaaaaggtcacgtacacacaaagccatgccatcaattttccaattaaaattcagtaaacaaaattaatggt 34872475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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