View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13983_high_9 (Length: 424)

Name: NF13983_high_9
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13983_high_9
NF13983_high_9
[»] chr4 (13 HSPs)
chr4 (20-407)||(6765986-6766373)
chr4 (24-183)||(52065472-52065631)
chr4 (108-187)||(32091438-32091516)
chr4 (88-189)||(6677408-6677507)
chr4 (127-187)||(6200005-6200065)
chr4 (107-143)||(38811362-38811398)
chr4 (122-181)||(43272440-43272499)
chr4 (222-347)||(5349995-5350116)
chr4 (309-350)||(24969834-24969875)
chr4 (108-187)||(41961377-41961455)
chr4 (92-128)||(26699634-26699670)
chr4 (293-353)||(31474305-31474364)
chr4 (88-143)||(52467527-52467583)
[»] chr3 (13 HSPs)
chr3 (55-187)||(25173623-25173754)
chr3 (122-182)||(50432789-50432849)
chr3 (229-327)||(4055744-4055841)
chr3 (119-181)||(3904130-3904192)
chr3 (41-102)||(10274630-10274691)
chr3 (297-350)||(21350961-21351014)
chr3 (41-184)||(3148124-3148266)
chr3 (88-142)||(1313980-1314034)
chr3 (309-350)||(32891273-32891314)
chr3 (64-137)||(42762172-42762245)
chr3 (88-143)||(29196560-29196616)
chr3 (88-143)||(31314385-31314440)
chr3 (88-143)||(44700651-44700707)
[»] chr6 (3 HSPs)
chr6 (64-189)||(22615886-22616011)
chr6 (74-187)||(186639-186752)
chr6 (350-386)||(2361014-2361050)
[»] chr1 (7 HSPs)
chr1 (20-143)||(1050617-1050741)
chr1 (24-225)||(1485862-1486067)
chr1 (229-327)||(13938228-13938325)
chr1 (117-187)||(12318653-12318722)
chr1 (91-143)||(43342429-43342481)
chr1 (258-321)||(38746701-38746764)
chr1 (125-181)||(33775886-33775941)
[»] chr2 (7 HSPs)
chr2 (64-161)||(43405880-43405979)
chr2 (82-179)||(24197830-24197926)
chr2 (229-321)||(34811209-34811299)
chr2 (293-344)||(1345620-1345671)
chr2 (58-187)||(41446049-41446177)
chr2 (88-143)||(11151764-11151819)
chr2 (88-143)||(13121708-13121764)
[»] scaffold0053 (1 HSPs)
scaffold0053 (76-187)||(24980-25091)
[»] chr5 (7 HSPs)
chr5 (75-179)||(32576435-32576540)
chr5 (108-159)||(35616129-35616180)
chr5 (82-162)||(32579157-32579237)
chr5 (88-143)||(19806324-19806378)
chr5 (117-187)||(316731-316800)
chr5 (55-179)||(32609437-32609561)
chr5 (309-353)||(42927060-42927104)
[»] chr7 (8 HSPs)
chr7 (108-184)||(1360286-1360361)
chr7 (97-184)||(3904751-3904837)
chr7 (258-334)||(13065374-13065449)
chr7 (92-142)||(26639264-26639314)
chr7 (90-140)||(40926852-40926900)
chr7 (293-327)||(48408959-48408993)
chr7 (88-143)||(36146581-36146637)
chr7 (88-143)||(48491519-48491574)
[»] chr8 (5 HSPs)
chr8 (88-143)||(41266908-41266963)
chr8 (125-181)||(40873630-40873686)
chr8 (97-181)||(8965828-8965911)
chr8 (309-349)||(1292423-1292463)
chr8 (24-159)||(7444975-7445107)
[»] scaffold0137 (1 HSPs)
scaffold0137 (119-181)||(10986-11048)


Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 20 - 407
Target Start/End: Complemental strand, 6766373 - 6765986
Alignment:
Q  20 atgtaaccaaaggagggaatgtttaggaaacataaaggctaagggttgagtctatttgggtgagattattgggttgtgaaacaattctaaacactttggg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6766373 atgtaaccaaaggagggaatgtttaggaaacataaaggctaagggttgagtctatttgggtgagattattgggttgtgaaacaattctaaacactttggg 6766274  T
Q  120 tgagtgaaatcattgagtctcttggtcacgggtagagattcgggaaaaagatagaaattaggtttgttttgggagccttgttgaatcttattttttctaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6766273 tgagtgaaatcattgagtctcttggtcacgggtagagattcgggaaaaagatagaaattaggtttgttttgggagccttgttgaatcttattttttctaa 6766174  T
Q  220 ccctttgtaaagaatctcatttatagtgaaacgaagagatctctctcctctagatgtaggttattgttgagctgaactgggtgaacaaattcttggtgtg 319  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6766173 ccctttgtaaagaatctcatttatagtgaaatgaagagatctctctcctccagatgtaggttattgttgagctgaactgggtgaacaaattcttggtgtg 6766074  T
Q  320 tttgtttcacttctcacattatcttttgcttttgtcaagtgcaccaaaccgttttcaagaaataaagattaggtaaatttgtctccac 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6766073 tttgtttcacttctcacattatcttttgcttttgtcaagtgcaccaaaccgttttcaagaaataaagattaagtaaatttgtctccac 6765986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 52065472 - 52065631
Alignment:
Q  24 aaccaaaggagggaatgtttaggaaacataaaggctaagggttgagtctatttgggtgagattattgggttgtgaaacaattctaaacactttgggtgag 123  Q
    ||||||| |||||||| |||||| ||| || ||| |||  ||||||  | ||| | ||||||| |||||||| ||||||||| | ||| | |||||||||    
T  52065472 aaccaaatgagggaatttttagggaacttagaggttaaaagttgagggtcttttgatgagattcttgggttgggaaacaattgtgaaccccttgggtgag 52065571  T
Q  124 tg-aaatcattgagtctcttggtcacgggtagagattcgggaaaaagatagaaattaggtt 183  Q
    || ||||||| |||||||||| |||  || ||| ||| |||||| || |||||||||||||    
T  52065572 tgaaaatcatcgagtctcttgatcaacggaagatatt-gggaaacaggtagaaattaggtt 52065631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 187
Target Start/End: Original strand, 32091438 - 32091516
Alignment:
Q  108 aaacactttgggtgagtgaaatcattgagtctcttggtcacgggtagagattcgggaaaaagatagaaattaggtttgtt 187  Q
    |||||| ||||||||| ||||||||||||||||||| ||| |||   ||||| ||||||| | |||||||||||||||||    
T  32091438 aaacacattgggtgagcgaaatcattgagtctcttgttcatgggagaagatt-gggaaaatgctagaaattaggtttgtt 32091516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 6677408 - 6677507
Alignment:
Q  88 ttgggttgtgaaacaattctaaacactttgggtgagtgaaatcattgagtctcttggtcacgggtagagattcgggaaaaagatagaaattaggtttgtt 187  Q
    |||||||| |||||| || ||||||| |||| |||||||||| ||||||||||||| ||  ||| ||| |||  |||||| | |||||||||||||| ||    
T  6677408 ttgggttgggaaacatttgtaaacacattggatgagtgaaataattgagtctcttgttcttgggaagaaatt--ggaaaatggtagaaattaggtttttt 6677505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 6200065 - 6200005
Alignment:
Q  127 aatcattgagtctcttggtcacgggtagagattcgggaaaaagatagaaattaggtttgtt 187  Q
    ||||||||||||||||||||||  | |||||||| |||||| |  ||||||||||||||||    
T  6200065 aatcattgagtctcttggtcacttgaagagattcaggaaaatggcagaaattaggtttgtt 6200005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 38811398 - 38811362
Alignment:
Q  107 taaacactttgggtgagtgaaatcattgagtctcttg 143  Q
    ||||||| |||||||||||||||||||||||||||||    
T  38811398 taaacaccttgggtgagtgaaatcattgagtctcttg 38811362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 43272499 - 43272440
Alignment:
Q  122 agtgaaatcattgagtctcttggtcacgggtagagattcgggaaaaagatagaaattagg 181  Q
    ||||||||||||||||||||||||||| || ||| ||| | ||||| | |||||||||||    
T  43272499 agtgaaatcattgagtctcttggtcacaggaagatatttgagaaaatggtagaaattagg 43272440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 347
Target Start/End: Original strand, 5349995 - 5350116
Alignment:
Q  222 ctttgtaaagaatctcatttatagtgaaacgaagagatctctctcctctagatgtaggttattgttgagctgaactgggtgaacaaattcttggtgtgtt 321  Q
    |||||||||||| ||| || ||| |||| || |||||||||||||| | ||| |||||| |||||||  ||||| ||||| ||||  || ||||||||||    
T  5349995 ctttgtaaagaa-ctcgttgataatgaagcggagagatctctctcccc-aga-gtaggtcattgttggactgaattgggtaaacat-ttattggtgtgtt 5350090  T
Q  322 tgtttcacttctcacattatcttttg 347  Q
    |||||| |||||| | ||||||||||    
T  5350091 tgtttctcttctctcgttatcttttg 5350116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 24969834 - 24969875
Alignment:
Q  309 ttcttggtgtgtttgtttcacttctcacattatcttttgctt 350  Q
    ||||||||||||||||||| |||||||| ||||| |||||||    
T  24969834 ttcttggtgtgtttgtttctcttctcactttatcgtttgctt 24969875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 187
Target Start/End: Original strand, 41961377 - 41961455
Alignment:
Q  108 aaacactttgggtgagtgaaatcattgagtctcttggtcacgggtagagattcgggaaaaaga-tagaaattaggtttgtt 187  Q
    |||||| |||| ||| |||||||||||||||||||| ||| | | |||||||  ||||||||| ||||||||| |||||||    
T  41961377 aaacaccttggctgattgaaatcattgagtctcttgttcatgagaagagatt--ggaaaaagagtagaaattaagtttgtt 41961455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 26699670 - 26699634
Alignment:
Q  92 gttgtgaaacaattctaaacactttgggtgagtgaaa 128  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  26699670 gttgggaaacaattgtaaacactttgggtgagtgaaa 26699634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 31474305 - 31474364
Alignment:
Q  293 gaactgggtgaacaaattcttggtgtgtttgtttcacttctcacattatcttttgcttttg 353  Q
    ||||||||| |||| || ||||||||||||||||| |||||| | |||||||| |||||||    
T  31474305 gaactgggtaaacatat-cttggtgtgtttgtttctcttctccctttatctttagcttttg 31474364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 52467583 - 52467527
Alignment:
Q  88 ttgggttgtgaaacaattctaaacactttgggtgagtg-aaatcattgagtctcttg 143  Q
    |||||||| |||||| || ||||||| ||||||||||| |||||||||||| |||||    
T  52467583 ttgggttgggaaacatttgtaaacaccttgggtgagtgaaaatcattgagtgtcttg 52467527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 55 - 187
Target Start/End: Complemental strand, 25173754 - 25173623
Alignment:
Q  55 aggctaagggttgagtctatttgggtgagattattgggttgtgaaacaattctaaacactttgggtgagtgaaatcattgagtctcttggtcacgggtag 154  Q
    |||||||| |||| || | |||| |||||||| ||  |||| ||||||||| ||||||| |||| | ||||||||||||||||||||||||||||| |||    
T  25173754 aggctaagagttgcgtgtctttgagtgagattcttaagttgagaaacaattgtaaacaccttgg-taagtgaaatcattgagtctcttggtcacggctag 25173656  T
Q  155 agattcgggaaaaagatagaaattaggtttgtt 187  Q
    |||||| |||||| | |||||||||||||||||    
T  25173655 agattctggaaaagggtagaaattaggtttgtt 25173623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 50432849 - 50432789
Alignment:
Q  122 agtgaaatcattgagtctcttggtcacgggtagagattcgggaaaaagatagaaattaggt 182  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||| | ||||||||||||    
T  50432849 agtgaaatcattgagtctcttggtcacaggatgagattcgggaaaagggtagaaattaggt 50432789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 327
Target Start/End: Complemental strand, 4055841 - 4055744
Alignment:
Q  229 aagaatctcatttatagtgaaacgaagagatctctctcctctagatgtaggttattgttgagctgaactgggtgaacaaattcttggtgtgtttgtttc 327  Q
    ||||| |||||| |||||| |  |||||||||||||||| | |||||||||| ||||||| || ||||||||| ||| || ||||||||| ||||||||    
T  4055841 aagaaactcattgatagtggattgaagagatctctctcccccagatgtaggtcattgttgggccgaactgggt-aaccaaatcttggtgtatttgtttc 4055744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 3904130 - 3904192
Alignment:
Q  119 gtgagtgaaatcattgagtctcttggtcacgggtagagattcgggaaaaagatagaaattagg 181  Q
    ||||||||||||||||||||| ||| ||||||| ||||||| || | || |||||||||||||    
T  3904130 gtgagtgaaatcattgagtctattgatcacgggaagagatttggaataaggatagaaattagg 3904192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 10274691 - 10274630
Alignment:
Q  41 tttaggaaacataaaggctaagggttgagtctatttgggtgagattattgggttgtgaaaca 102  Q
    ||||||||||  ||||||||||||||||||   ||||||||||||| |||||||| ||||||    
T  10274691 tttaggaaactgaaaggctaagggttgagtgcttttgggtgagattcttgggttgggaaaca 10274630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 350
Target Start/End: Complemental strand, 21351014 - 21350961
Alignment:
Q  297 tgggtgaacaaattcttggtgtgtttgtttcacttctcacattatcttttgctt 350  Q
    ||||| ||||| ||||||||||||||||||| |||||||| ||||||| |||||    
T  21351014 tgggtcaacaatttcttggtgtgtttgtttctcttctcactttatcttatgctt 21350961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 184
Target Start/End: Complemental strand, 3148266 - 3148124
Alignment:
Q  41 tttaggaaacataaaggctaagggttgagtctatttgggtgagattattgggttgtgaaacaattctaaacactttgggtgagtg-aaatcattgagtct 139  Q
    ||||||||||||||||| ||  | |||||  ||||| ||||||||| || ||||| ||||||||| |||||| ||| |||||||| |||| |||||||||    
T  3148266 tttaggaaacataaaggttattgattgagagtattttggtgagattcttaggttgggaaacaattgtaaaca-ttttggtgagtgaaaataattgagtct 3148168  T
Q  140 cttggtcacgggtagagattcgggaaaaagatagaaattaggttt 184  Q
     ||| |   ||| ||||||| | ||||  ||||||||||||||||    
T  3148167 tttgtttgtgggaagagatt-gagaaatggatagaaattaggttt 3148124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 1314034 - 1313980
Alignment:
Q  88 ttgggttgtgaaacaattctaaacactttgggtgagtgaaatcattgagtctctt 142  Q
    |||| ||| |||||| || ||||||| ||||||||||||||| ||||||||||||    
T  1314034 ttggattgggaaacatttgtaaacaccttgggtgagtgaaattattgagtctctt 1313980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 32891273 - 32891314
Alignment:
Q  309 ttcttggtgtgtttgtttcacttctcacattatcttttgctt 350  Q
    ||||||||||||||||||| |||||| | |||||||||||||    
T  32891273 ttcttggtgtgtttgtttctcttctctccttatcttttgctt 32891314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 42762172 - 42762245
Alignment:
Q  64 gttgagtctatttgggtgagattattgggttgtgaaacaattctaaacactttgggtgagtgaaatcattgagt 137  Q
    ||||||| | ||||||||||||| ||| ||||  | |||||| ||||||| ||||  |||||||||||||||||    
T  42762172 gttgagtgtttttgggtgagattcttgtgttggaagacaattataaacacattggaagagtgaaatcattgagt 42762245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 29196616 - 29196560
Alignment:
Q  88 ttgggttgtgaaacaattctaaacactttgggtgagtg-aaatcattgagtctcttg 143  Q
    |||||||| |||||| || ||||||| ||||||||||| |||||||||||| |||||    
T  29196616 ttgggttgggaaacatttgtaaacaccttgggtgagtgaaaatcattgagtgtcttg 29196560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 31314385 - 31314440
Alignment:
Q  88 ttgggttgtgaaacaattctaaacactttgggtgagtg-aaatcattgagtctcttg 143  Q
    |||||||| |||||| || ||||||||||||||||||| |||||||||||| |||||    
T  31314385 ttgggttgggaaaca-ttgtaaacactttgggtgagtgaaaatcattgagtgtcttg 31314440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 44700707 - 44700651
Alignment:
Q  88 ttgggttgtgaaacaattctaaacactttgggtgagtg-aaatcattgagtctcttg 143  Q
    |||||||| |||||| || ||||||| ||||||||||| |||||||||||| |||||    
T  44700707 ttgggttgggaaacatttgtaaacaccttgggtgagtgaaaatcattgagtgtcttg 44700651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 22615886 - 22616011
Alignment:
Q  64 gttgagtctatttgggtgagattattgggttgtgaaacaattctaaacactttgggtgagtgaaatcattgagtctcttggtcacgggtagagattcggg 163  Q
    ||||||| ||||||||||||| | ||||||||||||||| || |||| |  ||||||||||||||||||||||||||||| ||| | | | | |||||||    
T  22615886 gttgagtgtatttgggtgagaattttgggttgtgaaacatttgtaaatatcttgggtgagtgaaatcattgagtctcttgatcatgagaaaatattcggg 22615985  T
Q  164 aaaaagatagaaattaggtttgtttt 189  Q
    |||| |  |||||||| | |||||||    
T  22615986 aaaagggaagaaattaagattgtttt 22616011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 187
Target Start/End: Original strand, 186639 - 186752
Alignment:
Q  74 tttgggtgagattattgggttgtgaaacaattctaaacactttgggtgagtgaaatcattgagtctcttggtcacgggtagagattcgggaaaaagatag 173  Q
    |||| |||||||| |||||||| ||| ||||| ||||||  ||| ||| | |||||||| |||||||||||||||||  ||||| |||| |||| | |||    
T  186639 tttgagtgagattcttgggttgggaagcaattgtaaacatcttgtgtgtgagaaatcatcgagtctcttggtcacggaaagagaatcggaaaaatggtag 186738  T
Q  174 aaattaggtttgtt 187  Q
    |||| |||||||||    
T  186739 aaataaggtttgtt 186752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 2361050 - 2361014
Alignment:
Q  350 tttgtcaagtgcaccaaaccgttttcaagaaataaag 386  Q
    ||||||||||||||||||||||||||||| |||||||    
T  2361050 tttgtcaagtgcaccaaaccgttttcaagtaataaag 2361014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 1050741 - 1050617
Alignment:
Q  20 atgtaaccaaaggagggaatgtttagg-aaacataaaggctaagggttgagtctatttgggtgagattattgggttgtgaaacaattctaaacactttgg 118  Q
    |||||||||||||||||||  |||||| |||| || |||||||| ||||||| |  |||||||||||| |||||||| |||||| || || |||| |||     
T  1050741 atgtaaccaaaggagggaacttttagggaaacttataggctaagagttgagtgtcattgggtgagattcttgggttgggaaacatttgtacacacattga 1050642  T
Q  119 gtgagtgaaatcattgagtctcttg 143  Q
     |||||||||| |||||||||||||    
T  1050641 atgagtgaaattattgagtctcttg 1050617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 1486067 - 1485862
Alignment:
Q  24 aaccaaaggagggaatgtttaggaaacataaaggctaagggttgagtctatttgggtgagattattgggttgtg-aaacaattctaaacactttgggtga 122  Q
    |||||| ||||||||  |||||||||| || ||| |||| ||||||  | |||| |||||||| ||| |||| | |||||||| ||||||| ||  ||||    
T  1486067 aaccaatggagggaacttttaggaaacttagaggttaagagttgagcgtctttgtgtgagattcttgtgttggggaaacaattgtaaacacattaagtga 1485968  T
Q  123 gtgaaa-tcattgagtctcttggtcacgggtagagattcgggaaaaag-atagaaattaggtttgttttgggag-ccttgttgaatcttattttttctaa 219  Q
    |||||| ||||||||| |||| ||||| || ||||||||||| |||||  ||||||||||| || || | ||||  |||||||||| | |||| || |||    
T  1485967 gtgaaaatcattgagtatctttgtcacaggaagagattcgggtaaaagtgtagaaattaggatttttcttggagtgcttgttgaatataatttcttgtaa 1485868  T
Q  220 cccttt 225  Q
    ||||||    
T  1485867 cccttt 1485862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 327
Target Start/End: Original strand, 13938228 - 13938325
Alignment:
Q  229 aagaatctcatttatagtgaaacgaagagatctctctcctctagatgtaggttattgttgagctgaactgggtgaacaaattcttggtgtgtttgtttc 327  Q
    ||||| |||||| |||||| |  | |||||||||||||| | |||||||||| ||||||| |||||||||||| ||| || ||||||||| ||||||||    
T  13938228 aagaaactcattgatagtggattggagagatctctctcccccagatgtaggtcattgttgggctgaactgggt-aaccaaatcttggtgtatttgtttc 13938325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 12318722 - 12318653
Alignment:
Q  117 gggtgagtgaaatcattgagtctcttggtcacgggtagagattcgggaaaaagatagaaattaggtttgtt 187  Q
    ||||||||||||||||||||| ||||| ||| |||||||||||  |||||  | |||||||||||||||||    
T  12318722 gggtgagtgaaatcattgagtttcttgttcatgggtagagatt-tggaaatgggtagaaattaggtttgtt 12318653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 43342481 - 43342429
Alignment:
Q  91 ggttgtgaaacaattctaaacactttgggtgagtgaaatcattgagtctcttg 143  Q
    ||||| |||||| ||||| |||||||||||| ||||||||||| |||||||||    
T  43342481 ggttgggaaacatttctatacactttgggtgggtgaaatcatttagtctcttg 43342429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 38746764 - 38746701
Alignment:
Q  258 atctctctcctctagatgtaggttattgttgagctgaactgggtgaacaaattcttggtgtgtt 321  Q
    ||||||||||||  ||||||||| |||||||  ||||| | ||||||||||| |||||||||||    
T  38746764 atctctctcctccggatgtaggtcattgttggactgaatttggtgaacaaatccttggtgtgtt 38746701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 33775886 - 33775941
Alignment:
Q  125 gaaatcattgagtctcttggtcacgggtagagattcgggaaaaagatagaaattagg 181  Q
    |||||||||||||||||||||||| || ||| |||| | |||| |||||||||||||    
T  33775886 gaaatcattgagtctcttggtcac-ggaagatattcagaaaaatgatagaaattagg 33775941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 161
Target Start/End: Original strand, 43405880 - 43405979
Alignment:
Q  64 gttgagtctatttgggtgagattattgggttgtgaaacaattctaaacactttgggtgagtgaaatcattgag--tctcttggtcacgggtagagattcg 161  Q
    ||||||| | ||| ||||||||| |||||||| ||||||||| |||||||||||   ||||||||||||||||  ||||||| |||||| ||||||||||    
T  43405880 gttgagtgtcttttggtgagattcttgggttgagaaacaattgtaaacactttgtaagagtgaaatcattgagtctctcttgatcacggatagagattcg 43405979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 24197830 - 24197926
Alignment:
Q  82 agattattgggttgtgaaacaattctaaacactttgggtgagtgaaatcattgagtctcttggtcacgggtagagattcgggaaaaagatagaaatta 179  Q
    ||||||| ||| || ||||||||| ||||||| ||||||   | ||||||||| |||||||||||||||| ||||||| ||||||| | |||||||||    
T  24197830 agattatagggctgggaaacaattgtaaacaccttgggtacat-aaatcattgggtctcttggtcacgggaagagatttgggaaaagggtagaaatta 24197926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 321
Target Start/End: Complemental strand, 34811299 - 34811209
Alignment:
Q  229 aagaatctcatttatagtgaaacgaagagatctctctcctctagatgtaggttattgttgagctgaactgggtgaacaaattcttggtgtgtt 321  Q
    ||||| |||||| ||||||||| |||||  ||| |||||||| ||||||||| ||| || |||||||||| || || ||||||||||||||||    
T  34811299 aagaaactcattgatagtgaaatgaaga--tctttctcctcttgatgtaggtcattattaagctgaactgtgtaaataaattcttggtgtgtt 34811209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 1345620 - 1345671
Alignment:
Q  293 gaactgggtgaacaaattcttggtgtgtttgtttcacttctcacattatctt 344  Q
    ||||||||| ||||| ||||||||||||||||||| |||||||| |||||||    
T  1345620 gaactgggtcaacaatttcttggtgtgtttgtttctcttctcactttatctt 1345671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 41446049 - 41446177
Alignment:
Q  58 ctaagggttgagtctatttgggtgagattattgggttgtgaaacaattctaaacactttgggtgagtgaaa-tcattgagtctcttggtcacgggtagag 156  Q
    ||||| ||||||| | ||||||||| ||| || |||||  |||||||| |||| ||||  ||||||||||| |||||||| |||||  ||||||  ||||    
T  41446049 ctaagagttgagtgtctttgggtgaaattcttaggttggaaaacaattgtaaatactt--ggtgagtgaaaatcattgagcctcttaatcacggaaagag 41446146  T
Q  157 attcgggaaaaagatagaaattaggtttgtt 187  Q
    |||||  |||||| ||||||||| |||||||    
T  41446147 attcgaaaaaaaggtagaaattatgtttgtt 41446177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 11151819 - 11151764
Alignment:
Q  88 ttgggttgtgaaacaattctaaacactttgggtgagtgaaa-tcattgagtctcttg 143  Q
    |||||||| |||||| || ||||||| |||||||||||||| |||||||||||||||    
T  11151819 ttgggttgggaaaca-ttgtaaacaccttgggtgagtgaaaatcattgagtctcttg 11151764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 13121708 - 13121764
Alignment:
Q  88 ttgggttgtgaaacaattctaaacactttgggtgagtg-aaatcattgagtctcttg 143  Q
    |||||||| |||||| || ||||||| ||||||||||| |||||||||||| |||||    
T  13121708 ttgggttgggaaacatttgtaaacacattgggtgagtgaaaatcattgagtgtcttg 13121764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 76 - 187
Target Start/End: Original strand, 24980 - 25091
Alignment:
Q  76 tgggtgagattattgggttgtgaaacaattctaaacactttgggtgagtgaaatcattgagtctcttggtcacgggtagagattcgggaaaaagatagaa 175  Q
    ||||||||||| |||||||  ||||||||| ||||||| ||||| ||||||||||||||||||| ||| ||||  |   ||||||||||||| | |||||    
T  24980 tgggtgagattcttgggtttggaaacaattgtaaacaccttgggagagtgaaatcattgagtctgttgatcacatgacaagattcgggaaaatggtagaa 25079  T
Q  176 attaggtttgtt 187  Q
    | ||| ||||||    
T  25080 actagttttgtt 25091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 32576540 - 32576435
Alignment:
Q  75 ttgggtgagattattgggttgtgaaacaattctaaacactttgggtgagtg-aaatcattgagtctcttggtcacgggtagagattcgggaaaaagatag 173  Q
    |||||||||||| |||||||| ||||||||| ||||||| |  | |||||| |||||||| ||||||||| ||||    ||||||||||||||| |||||    
T  32576540 ttgggtgagattcttgggttgggaaacaattgtaaacacctaagatgagtgaaaatcattaagtctcttgatcacaataagagattcgggaaaatgatag 32576441  T
Q  174 aaatta 179  Q
    ||||||    
T  32576440 aaatta 32576435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 35616129 - 35616180
Alignment:
Q  108 aaacactttgggtgagtgaaatcattgagtctcttggtcacgggtagagatt 159  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| |||||||    
T  35616129 aaacaccttgggtgagtgaaatcattgagtctcttgttcacgggaagagatt 35616180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 32579157 - 32579237
Alignment:
Q  82 agattattgggttgtgaaacaattctaaacactttgggtgagtgaaatcattgagtctcttggtcacgggtagagattcgg 162  Q
    ||||| |||||||| |||| |||| ||||||| |||| | ||||||||||||||||||||||| |||  | ||||||||||    
T  32579157 agattcttgggttgagaaataattgtaaacaccttggataagtgaaatcattgagtctcttggccacatgaagagattcgg 32579237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 19806324 - 19806378
Alignment:
Q  88 ttgggttgtgaaacaattctaaacactttgggtgagtgaaatcattgagtctcttg 143  Q
    |||||||| |||||| || ||||||| ||||||||||||||||||||||| |||||    
T  19806324 ttgggttgggaaaca-ttgtaaacaccttgggtgagtgaaatcattgagtgtcttg 19806378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 316731 - 316800
Alignment:
Q  117 gggtgagtgaaatcattgagtctcttggtcacgggtagagattcgggaaaaagatagaaattaggtttgtt 187  Q
    |||||||||||||||||| |||||||| | | ||| | ||||| | ||||||| |||||||||||||||||    
T  316731 gggtgagtgaaatcattgggtctcttgtttaggggaaaagatt-gagaaaaaggtagaaattaggtttgtt 316800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 32609437 - 32609561
Alignment:
Q  55 aggctaagggttgagtctatttgggtgagattattgggttgtgaaacaattctaaacactttgggtgagtgaaatcattgagtctcttggtcacgggtag 154  Q
    |||||||| ||| ||| | ||||||||||||| |||||||  ||||||||| ||| ||  |||  ||||||||   |||||||||||||| ||||   ||    
T  32609437 aggctaagagttaagtgtctttgggtgagattcttgggttaggaaacaattgtaatcaacttgtatgagtgaatatattgagtctcttggccacgaaaag 32609536  T
Q  155 agattcgggaaaaagatagaaatta 179  Q
    ||||| || |||| | |||||||||    
T  32609537 agatttggtaaaagggtagaaatta 32609561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 42927060 - 42927104
Alignment:
Q  309 ttcttggtgtgtttgtttcacttctcacattatcttttgcttttg 353  Q
    ||||||||||||||||||| ||| || | ||||||||||||||||    
T  42927060 ttcttggtgtgtttgtttctcttatctccttatcttttgcttttg 42927104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 1360361 - 1360286
Alignment:
Q  108 aaacactttgggtgagtgaaatcattgagtctcttggtcacgggtagagattcgggaaaaagatagaaattaggttt 184  Q
    |||||| || |||||||||||||||||||||||||| ||| ||   |||||| ||||||||| ||||||||||||||    
T  1360361 aaacacctttggtgagtgaaatcattgagtctcttgttcatggaatgagatt-gggaaaaaggtagaaattaggttt 1360286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 3904837 - 3904751
Alignment:
Q  97 gaaacaattctaaacactttgggtgagtgaaatcattgagtctcttggtcacgggtagagattcgggaaaaagatagaaattaggttt 184  Q
    |||||| || ||||||| ||||| ||||||||||||||||||||||| ||   || ||||||| ||||||| | ||||||||||||||    
T  3904837 gaaacatttgtaaacaccttgggcgagtgaaatcattgagtctcttgttcttaggaagagatt-gggaaaatggtagaaattaggttt 3904751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 334
Target Start/End: Complemental strand, 13065449 - 13065374
Alignment:
Q  258 atctctctcctctagatgtaggttattgttgagctgaactgggtgaacaaattcttggtgtgtttgtttcacttctc 334  Q
    |||||||||||||| | |||||||||||||  |  ||| |||||||||||| ||| |||||||||||||| ||||||    
T  13065449 atctctctcctctatacgtaggttattgttatgtcgaattgggtgaacaaa-tctcggtgtgtttgtttctcttctc 13065374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 26639264 - 26639314
Alignment:
Q  92 gttgtgaaacaattctaaacactttgggtgagtgaaatcattgagtctctt 142  Q
    |||| |||||| || |||||||||| ||||||| |||||||||||||||||    
T  26639264 gttgggaaacatttgtaaacactttaggtgagtaaaatcattgagtctctt 26639314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 40926900 - 40926852
Alignment:
Q  90 gggttgtgaaacaattctaaacactttgggtgagtgaaatcattgagtctc 140  Q
    |||||| |||||||| ||||||||||||| |||||||||||||||||||||    
T  40926900 gggttgggaaacaat-ctaaacactttgg-tgagtgaaatcattgagtctc 40926852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 327
Target Start/End: Original strand, 48408959 - 48408993
Alignment:
Q  293 gaactgggtgaacaaattcttggtgtgtttgtttc 327  Q
    ||||||||||||||| |||||||||||||||||||    
T  48408959 gaactgggtgaacaatttcttggtgtgtttgtttc 48408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 36146637 - 36146581
Alignment:
Q  88 ttgggttgtgaaacaattctaaacactttgggtgagtg-aaatcattgagtctcttg 143  Q
    |||||||| |||||| || ||||||| ||||||||||| |||||||||||| |||||    
T  36146637 ttgggttgggaaacatttgtaaacaccttgggtgagtgaaaatcattgagtgtcttg 36146581  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 48491519 - 48491574
Alignment:
Q  88 ttgggttgtgaaacaattctaaacactttgggtgagtg-aaatcattgagtctcttg 143  Q
    |||||||| |||||| || ||||||||||||||||||| |||||||||||| |||||    
T  48491519 ttgggttgggaaaca-ttgtaaacactttgggtgagtgaaaatcattgagtgtcttg 48491574  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 41266908 - 41266963
Alignment:
Q  88 ttgggttgtgaaacaattctaaacactttgggtgagtgaaatcattgagtctcttg 143  Q
    |||||||| || ||| || |||| ||||||||||||||||||||||||||||||||    
T  41266908 ttgggttgggagacagttgtaaatactttgggtgagtgaaatcattgagtctcttg 41266963  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 40873630 - 40873686
Alignment:
Q  125 gaaatcattgagtctcttggtcacgggtagagattcgggaaaaagatagaaattagg 181  Q
    ||||||||||||| ||||||||| ||| |||||||||||||||  ||| ||||||||    
T  40873630 gaaatcattgagtgtcttggtcatgggaagagattcgggaaaattatataaattagg 40873686  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 8965911 - 8965828
Alignment:
Q  97 gaaacaattctaaacactttgggtgagtg-aaatcattgagtctcttggtcacgggtagagattcgggaaaaagatagaaattagg 181  Q
    |||||| || ||||||| ||||||||||| |||||||||||| ||||| |||  ||| |||||| ||||||||| |||||||||||    
T  8965911 gaaacatttgtaaacaccttgggtgagtgaaaatcattgagtgtcttgttcattggt-gagatt-gggaaaaaggtagaaattagg 8965828  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 1292463 - 1292423
Alignment:
Q  309 ttcttggtgtgtttgtttcacttctcacattatcttttgct 349  Q
    ||||||||||||||||||| |||||| | ||||||||||||    
T  1292463 ttcttggtgtgtttgtttctcttctctccttatcttttgct 1292423  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 7445107 - 7444975
Alignment:
Q  24 aaccaaaggagggaatgtttaggaaacataaaggctaagggttgagtctatttgggtgagattattgggttgtgaaacaattctaaacactttgggtgag 123  Q
    ||||||||| |||||| ||||| ||||||||| ||||| ||||| |  | |||| |||| ||| |||||||| |||||||||  |||||| |||| ||||    
T  7445107 aaccaaaggtgggaat-tttagaaaacataaaagctaaaggttgggg-tctttgagtgatatttttgggttg-gaaacaattacaaacacgttgg-tgag 7445012  T
Q  124 tgaaa-tcattgagtctcttggtcacgggtagagatt 159  Q
    ||||| || |||||||||||| ||| ||| |||||||    
T  7445011 tgaaaatctttgagtctcttgttcatgggaagagatt 7444975  T

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Target: scaffold0137 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 10986 - 11048
Alignment:
Q  119 gtgagtgaaatcattgagtctcttggtcacgggtagagattcgggaaaaagatagaaattagg 181  Q
    ||||||||||||||||||||| ||| ||| ||| ||||||| || | || |||||||||||||    
T  10986 gtgagtgaaatcattgagtctattgatcatgggaagagatttggaataaggatagaaattagg 11048  T

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