View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13983_low_1 (Length: 705)
Name: NF13983_low_1
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13983_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 5e-64; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 470 - 688
Target Start/End: Complemental strand, 12369751 - 12369535
Alignment:
| Q |
470 |
catcgatccactattcatattgaattggattcataactttgcttttaaacttgagtcaaacgtaaagaactcattttgatttcaattggcgttttgtt-- |
567 |
Q |
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| T |
12369751 |
catcggtccactattcatattgaattggattcataactttgcttttaaacttcattcaaccgtaaataactcattttgatttcaattgccattttgtttt |
12369652 |
T |
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| Q |
568 |
ttttatattattcatccaaattcaattaattatcttgttgctacgtattatatctggattccaattattacattgtggatgttgctctagtttcaattcc |
667 |
Q |
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| T |
12369651 |
ttttttattattcatccaaactcaattaattctcttgctgctacgtgttatatctggatttcaattatta----gtggttgtgcctctagtttcaattcc |
12369556 |
T |
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| Q |
668 |
aattgcctgttcatttatatc |
688 |
Q |
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|||||||| |||||||||||| |
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| T |
12369555 |
aattgccttttcatttatatc |
12369535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 12370163 - 12370058
Alignment:
| Q |
5 |
tgtccaagaatatccaaaattgtcccaatgcaaatgcaagctgcacagccaaatcctgtcaaaggcgtttgcttgcttcctccccaattcaagcagtgtt |
104 |
Q |
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| T |
12370163 |
tgtccaataatatccaaaattgtcccaatccaaatgcaagctgtacagccaaatcctgtcaaacgtgtttgcttgcttcctccccaattcaagcagtgtt |
12370064 |
T |
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| Q |
105 |
atcaca |
110 |
Q |
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| T |
12370063 |
atcaca |
12370058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 328 - 408
Target Start/End: Complemental strand, 12369892 - 12369813
Alignment:
| Q |
328 |
ttacagccgtagttacatatatatgtttcatcgctactgttgaattatttggatcccaatccctaccattttccattgccg |
408 |
Q |
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| T |
12369892 |
ttacagccgtagttccatatatatgtttcatcgctattgttgaattatttggat-ccaatccctaccattttcccttgccg |
12369813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 12370044 - 12370011
Alignment:
| Q |
126 |
ttttaacaaaccctaaccctactcctagtcctat |
159 |
Q |
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| T |
12370044 |
ttttaacaaaccctaaccctactcctaatcctat |
12370011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 3336265 - 3336114
Alignment:
| Q |
5 |
tgtccaagaatatccaaaattgtcccaatgcaaatgcaagctgcacagccaaatcctgtcaaaggcgtttgcttgcttcctccccaattcaagcagtgtt |
104 |
Q |
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| T |
3336265 |
tgtccaataatattcaaaattgtcccaatccaaatgcaagctgcacagccaaatcctgtcaaacacgtttgcttgcttcctccccaattcaagcagtgtt |
3336166 |
T |
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| Q |
105 |
atcacannnnnnnnctctgctttttaacaaaccctaaccctactcctagtcctat |
159 |
Q |
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| T |
3336165 |
atcaca--ttttttctctac-ttttaacaaaccctaactctactcctagtcctat |
3336114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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