View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13983_low_10 (Length: 512)
Name: NF13983_low_10
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13983_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 11 - 494
Target Start/End: Original strand, 39824735 - 39825218
Alignment:
| Q |
11 |
cagagaggtaccgattatgcaaaactatcgactgtcagaaactatcacaagaagcatgcagccatgcagcacaaaatgaaagactaccagttcaaatggc |
110 |
Q |
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| T |
39824735 |
cagagaggtaccgattatgcaaaactatcgactgtcagaaactatcacaagaagcatgcagccatgcagcacaaaatgaaagactaccagttcaaatggc |
39824834 |
T |
|
| Q |
111 |
agtacaagttctatacttcgaacaaatccgtctacgcaatgctatgaacggaggaggacacaatcaactactttttggtggacttaacggtcaattccct |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39824835 |
agtacaagttctatacttcgaacaaatccgtctacgcaacgctatgaacggaggaggacacaatcaactactttttggtggacttaacggtcaattccct |
39824934 |
T |
|
| Q |
211 |
caacgttcaggcagtggtgcaggaagtggagcaatgtcacctagagataactatgcatcagttagaagagagaaccgtgagctgaaactcgaagtaacaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39824935 |
caacgttcaggcagtggtgcaggaagtggagcaatgtcacctagagataactatgcatcagttagaagagagaaccgtgagctgaaactcgaagtaacaa |
39825034 |
T |
|
| Q |
311 |
gaatgagaatgagactcactgatttggagaaagatcatgtttctatgaaacaagagcttgttaagtctcatcctgctaataaactctttaaatcattcac |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39825035 |
gaatgagaatgagactcactgatttggagaaagatcatgtttctatgaaacaagagcttgttaagtctcatcctgctaataaactcttcaaatcattcac |
39825134 |
T |
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| Q |
411 |
caagaaattaagtaagcttaatgcattgtttcggatgaatggtattaaggcgaatggcgttggttcggagagtcggtttccttt |
494 |
Q |
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| T |
39825135 |
caagaaattaagtaagcttaatgcattgtttcggatgaatggtattaaggcgaatggcgttggttcggagagtcggtttccttt |
39825218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 7e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 29 - 386
Target Start/End: Complemental strand, 44047229 - 44046875
Alignment:
| Q |
29 |
gcaaaactatcgactgtcagaaactatcacaagaagcatgcagccatgcagcacaaaatgaaagactaccagttcaaatggcagtacaagttctatactt |
128 |
Q |
| |
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||||||| || || |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| | ||||||||||| |||| |
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| T |
44047229 |
gcaaaacaattgattgtcagaaactatctcaagaagcatgcagccatgccgcacaaaatgaaaggctaccagttcaaataggtgtacaagttctttacta |
44047130 |
T |
|
| Q |
129 |
cgaacaaatccgtctacgcaatgctatgaacggaggaggacacaatcaactactttttggtggacttaacggtcaattccctcaacgttcaggcagtggt |
228 |
Q |
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| T |
44047129 |
cgaacaaataaggcttcgaaacgcgatgaatggagga---cacaatcaaatcttgtttggtggtattcatggtcaatttcctcaaagatcagggagtggt |
44047033 |
T |
|
| Q |
229 |
gcaggaagtggagcaatgtcacctagagataactatgcatcagttagaagagagaaccgtgagctgaaactcgaagtaacaagaatgagaatgagactca |
328 |
Q |
| |
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||||||||||||||| || |||||||||||||||||||| || ||||||||||| || |||||||| || ||||||||||||||||||||||| | | |
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| T |
44047032 |
ataggaagtggagcaatttctcctagagataactatgcatcggtaagaagagagaatcgagagctgaagcttgaagtaacaagaatgagaatgaggttga |
44046933 |
T |
|
| Q |
329 |
ctgatttggagaaagatcatgtttctatgaaacaagagcttgttaagtctcatcctgc |
386 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||| ||| | |||||||| |
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| T |
44046932 |
atgatttggagaaagatcatgtttctatgaagcaagagcttgtgaagacacatcctgc |
44046875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 27608607 - 27608558
Alignment:
| Q |
40 |
gactgtcagaaactatcacaagaagcatgcagccatgcagcacaaaatga |
89 |
Q |
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||||||||||| || |||||||||||||||| |||||| ||||| ||||| |
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| T |
27608607 |
gactgtcagaagctgtcacaagaagcatgcaaccatgctgcacagaatga |
27608558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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