View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13983_low_11 (Length: 510)
Name: NF13983_low_11
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13983_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 142 - 492
Target Start/End: Complemental strand, 44674887 - 44674536
Alignment:
| Q |
142 |
gcacatgcgccacaacaagtgtttgatttttggtggcaccttcagacgccaaatatctttccaattgcccggtcgacgaagatgagtgacatca-tcaat |
240 |
Q |
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| T |
44674887 |
gcacatgcgccacaagaagtgtttgatttttggtggcaccttcagacgccaaatatctttccaattgcccggtcgacgaagatgagtgacatcaatcaat |
44674788 |
T |
|
| Q |
241 |
tcctccacacataatctgtacgcacttcgaacggagtagcagccattccgttatgctttccaaactaaatgatccgtttgaacttgttcgaaaagagggg |
340 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
44674787 |
tcctccacacataatttgtctgcacttcgaacggagtagcagccattccgttatgctttctaaactaaatgatacgtttgaacttgttcgaaaagagggg |
44674688 |
T |
|
| Q |
341 |
tatgtaaaatactatcagcaacatcgtgactgaaaacctgtcgaaccagaggcgtattccactcttttcgttgtgcagacatcaaactctgaaccgtaaa |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44674687 |
tatgtaaaatactatcagcaacatcgtgactgaaaacctgtcgaaccagaggcgtattccactctttccgttgtgcagacatcaaactctgaaccgtaaa |
44674588 |
T |
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| Q |
441 |
tccttgaacaaaatgacctccctcaatgttctcatcaatacacgcaccatta |
492 |
Q |
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| T |
44674587 |
tccttgaacaaaatgacctccctcaatgttctcatcaatacacgcaccatta |
44674536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 379
Target Start/End: Original strand, 22787056 - 22787269
Alignment:
| Q |
167 |
atttttggtggcaccttcagacgccaaatatctttccaattgcccggtcgacgaagatgagtgacatc-atcaattcctccacacataatctgtacgcac |
265 |
Q |
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| T |
22787056 |
atttttggtggaaccttaagccgccaaatatccttccaattgcccggacgatgaagatgagaaacgtcgatcaactcttcaacacataatctatacgcac |
22787155 |
T |
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| Q |
266 |
ttcgaacggagtagcagccattccgttatgctttccaaactaaatgatccgtttgaacttgttcgaaaagaggggtatgtaaaatactatcagcaacatc |
365 |
Q |
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| || ||||| || |||||| | || ||||||| |||||||| ||||||||||||||||| || |||| ||||||| |||||| ||||| |
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| T |
22787156 |
tcttcaccgagtaacaaccattcttctccgccttccaaatcaaatgatcgtgctgaacttgttcgaaaagtggcgtattcaaaatacgatcagccacatc |
22787255 |
T |
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| Q |
366 |
gtgactgaaaacct |
379 |
Q |
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| T |
22787256 |
atcgctgaaaacct |
22787269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 18610282 - 18610245
Alignment:
| Q |
190 |
ccaaatatctttccaattgcccggtcgacgaagatgag |
227 |
Q |
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| T |
18610282 |
ccaaatatctttccaattgcccggtcgatgaagatgag |
18610245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 44496468 - 44496363
Alignment:
| Q |
18 |
tagcaaaagaacattcaaagaaaatgtgatttaagtcctcatgattcgaactgccgctaacacatcgcgtcgggcacattacgccgttgtcttgcaaccg |
117 |
Q |
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||||||||| ||| |||||||| |||||||| | ||| || || | ||||| | |||| |||| |||||||||||| || || |||||||||||||| |
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| T |
44496468 |
tagcaaaaggacactcaaagaagatgtgattcaggtcttcgtgttcagaactacagctagcacaccgcgtcgggcacgaaacccctttgtcttgcaaccg |
44496369 |
T |
|
| Q |
118 |
aactct |
123 |
Q |
| |
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|||||| |
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| T |
44496368 |
aactct |
44496363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 207
Target Start/End: Original strand, 13812548 - 13812648
Alignment:
| Q |
107 |
tcttgcaaccgaactctagtaggaaggcattcgatgcacatgcgccacaacaagtgtttgatttttggtggcaccttcagacgccaaatatctttccaat |
206 |
Q |
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|||||||| ||||||||||| ||||||||| | | ||||| ||||| |||| | ||||| ||| || || ||||| | |||||||||||| ||||||| |
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| T |
13812548 |
tcttgcaaacgaactctagttggaaggcatcccctacacattcgccataacagatttttgactttcggaggaacctttaaacgccaaatatcattccaat |
13812647 |
T |
|
| Q |
207 |
t |
207 |
Q |
| |
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| |
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|
| T |
13812648 |
t |
13812648 |
T |
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