View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13983_low_13 (Length: 429)
Name: NF13983_low_13
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13983_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 8499308 - 8499707
Alignment:
| Q |
18 |
ttggcaacatcttatgcagctgttttgtaatgtcattatgtgtaattagatccaacctgaactagaaacagctctgatgaatgttttattacatttattt |
117 |
Q |
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| T |
8499308 |
ttggcaacatcttatgcagctgttttgtaatgtcattatgtgtaattagatccaacctgaactagaaacagctctgatgaatgttttattacatttattt |
8499407 |
T |
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| Q |
118 |
catccataaattcattgttcaatcatagtttttcgataccttaatgtcattacaggacacagaactagcagctgcagagaaaaaactagcagaatgtcag |
217 |
Q |
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| T |
8499408 |
catccataaattcattgttcaatcatagtttttcgataccttaatgtcattacaggacacagaactagcagctgcagagaaaaaactagcagaatgtcag |
8499507 |
T |
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| Q |
218 |
gagacactacatgtacttggtaggcaattacaagcaatgtgcccacaaactgactctagaagatttcaaacaaatgaatcttccattaaaccgaattatg |
317 |
Q |
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| T |
8499508 |
gagacactacatgtacttggtaggcaattacaagcaatgtgcccacaaactgactctaaaagatttcaaacaaatgaatcttccattaaaccgaattatg |
8499607 |
T |
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| Q |
318 |
gctggtcgaattctaatggctcgtatacctcagatgaaattgatcatgctgaagcatgtagtgtatcttctacttctgacattcaaggaatgaatgatga |
417 |
Q |
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| T |
8499608 |
gctggtcgaattctaatggctcgtatacctcagatgaaattgatcatgctgaagcatgtagtgtatcttctacttctgacattcaaggaatgaatgatga |
8499707 |
T |
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