View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13983_low_18 (Length: 401)
Name: NF13983_low_18
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13983_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 220 - 346
Target Start/End: Complemental strand, 28403317 - 28403191
Alignment:
| Q |
220 |
aacagaaataaattctaacacagtagagttgaatcttgagccacaagaaccatgattggaaaagattataaatttcaacaaaagaaacggttttgaaatt |
319 |
Q |
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| T |
28403317 |
aacagaaataaatactaacacagtagagttgaatcttgagccacaagaaccatgattggaaaagattataaatttcaataaaagaaacggttttgaaatt |
28403218 |
T |
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| Q |
320 |
ttaaccatgattagaaaactcatcaac |
346 |
Q |
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| T |
28403217 |
ttaaccatgattggaaaactcatcaac |
28403191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 24 - 182
Target Start/End: Original strand, 28586300 - 28586461
Alignment:
| Q |
24 |
tatcaagaacaagaagattcattctttcaaggattcacaatcaaaa-tctcatctcataaatttatcaatgtataaaccatttcttacaaatcaaacaaa |
122 |
Q |
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| T |
28586300 |
tatcaagaacaagaagattcattctttcaaggattcacaatcaaaaatctcatctcataaatttatcaatgcataaatcatttcttacagatcaaatgaa |
28586399 |
T |
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| Q |
123 |
tat--tgagtcatttctgatgatcaagaagttctgtttgtgatgagtttggactaaaagaaa |
182 |
Q |
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| T |
28586400 |
tatattgagtcatttctgatgatcaagaaattctgtttgtgatgagtttgggctaacagaaa |
28586461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 24 - 182
Target Start/End: Complemental strand, 28403472 - 28403310
Alignment:
| Q |
24 |
tatcaagaacaagaagattcattctttcaaggattcacaatcaaaatctcatctcataaatttatc--aatgtataaaccatttcttacaaatcaaa--c |
119 |
Q |
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| T |
28403472 |
tatcaagaacaagaagattcattctttcaaggattcacaatcaaaatctcatctcataaatttatcaaaatgcataaatcatttcttacagatcaaatga |
28403373 |
T |
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| Q |
120 |
aaatattgagtcatttctgatgatcaagaagttctgtttgtgatgagtttggactaaaagaaa |
182 |
Q |
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| T |
28403372 |
atatattgagtcatttctgatgatcaagaaattctgtttgtgatgagtttgggctaacagaaa |
28403310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 28586454 - 28586516
Alignment:
| Q |
220 |
aacagaaataaattctaacacagtagagttgaatcttgagccacaagaaccatgattggaaaa |
282 |
Q |
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| T |
28586454 |
aacagaaataaatactaacacagtagagttgaatcttgagccacaagaaccatgattggaaaa |
28586516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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