View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13983_low_19 (Length: 392)
Name: NF13983_low_19
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13983_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 108 - 295
Target Start/End: Original strand, 28403488 - 28403685
Alignment:
| Q |
108 |
atgtactcccttttgtataataaatatgtttcctttgatcttgatgttctaaggtcatagtttattccattttattctcagaacaattattt-------- |
199 |
Q |
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| T |
28403488 |
atgtactcccttttgtataataaatatgtttcctgtgatattgatgctctaaggttatagtctattccattttattctcagaacaattatttaatattca |
28403587 |
T |
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| Q |
200 |
atactcaataagataattacagttttttatctgaacca-gtgt-tatattaaagaacttgtgacagttgattttgacatatgttgcattgtattcatg |
295 |
Q |
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| T |
28403588 |
ataatcaatatgataattacagtttttgatctgaaccatttgtgtatattaaagaacttgtgatggttggttttgtcatatgttgtattgcattcatg |
28403685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 292 - 383
Target Start/End: Original strand, 28403707 - 28403798
Alignment:
| Q |
292 |
catgatgctacaggcataaggtcttttgagcgagctacgtatgatataagaactaggattaaagacattgttaaaatatcttggtgatgatg |
383 |
Q |
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| T |
28403707 |
catgatgctacaggcataaggtcttttgagcgagctacgtatgatataagaactaggattaaagacattgttaaaatatcttggtgatgatg |
28403798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 292 - 383
Target Start/End: Complemental strand, 28586089 - 28585998
Alignment:
| Q |
292 |
catgatgctacaggcataaggtcttttgagcgagctacgtatgatataagaactaggattaaagacattgttaaaatatcttggtgatgatg |
383 |
Q |
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| T |
28586089 |
catgatgctacaggcataaggtcttttgagcgagctacgtatgatataagaactaggattaaagacattgttaaaatatcttggtgatgatg |
28585998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 148 - 295
Target Start/End: Complemental strand, 28586268 - 28586111
Alignment:
| Q |
148 |
ttgatgttctaaggtcatagtttattccattttattctcagaacaattattt--------atactcaataagataattacagttttttatctgaacca-g |
238 |
Q |
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| T |
28586268 |
ttgatgctctaaggttatagtctattccattttattctcagaacaattatttaatattcaataatcaatatgacaattacagtttttgatctgaaccatt |
28586169 |
T |
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| Q |
239 |
tgt-tatattaaagaacttgtgacagttgattttgacatatgttgcattgtattcatg |
295 |
Q |
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| T |
28586168 |
tgtgtatattaaagaacttgtgatggttggttttgtcatatgttgtattgcattcatg |
28586111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 8047415 - 8047370
Alignment:
| Q |
323 |
gagctacgtatgatataagaactaggattaaagacat-tgttaaaa |
367 |
Q |
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| T |
8047415 |
gagctacatatgatataagaactaggattaaagacatatgttaaaa |
8047370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 21188898 - 21188822
Alignment:
| Q |
1 |
cgattatgttcaatcgcgataatgttaatgaagtcgccaacgaaataagaattaaatagtgtaattttaaagaagtg |
77 |
Q |
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| T |
21188898 |
cgattatgttcaatcgcgataatgataatgaagacgacaacgaaataagaatgaaatagtgtaatttcaaagaagtg |
21188822 |
T |
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