View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13983_low_2 (Length: 624)
Name: NF13983_low_2
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13983_low_2 |
 | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0010 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 17 - 612
Target Start/End: Original strand, 253168 - 253763
Alignment:
| Q |
17 |
catttcagcttttccttttccatttcaaaacatcctgtacattttgaatagcccttctttggattcttgcttgataagcactcaaaatttctacattggt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
253168 |
catttcagcttttccttttccatttcaaaacatccagtacattttgaatagcccttctttggattcttgcttgataagcactcaaaatttctacattggt |
253267 |
T |
|
| Q |
117 |
aattcccccatctaacatttctttcatctggtaatctccagagtgactcgttgattgggtaaggtttactgtaaactttcgaagcccgtgtcaaacatct |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
253268 |
aattcccccatctaacatttctttcatctggtaatctccagagtgactcattgattgggtaaggtttactgtaaactttcgaagcccgtgtcaaacatct |
253367 |
T |
|
| Q |
217 |
tcttctaggcaaaggatcacacccattaagcataagcttttgagctaaattccaatcatcatcacagtatgaaccaatgtcatagtccatgtactgttct |
316 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
253368 |
tcttctaggtaaaggatcacacccattaagcataagcttttgagctaaattccaatcatcatcacagtatgaaccaatgtcatagtccatgtactgttct |
253467 |
T |
|
| Q |
317 |
agctctttcttatgcaaaacacatgcatgcccaattgtgttataaaccttgtctgacccatatagattaatcctactaactctattctcctttggggtta |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
253468 |
agctctttcttatgcaaaacacatgcatgcccaattgtgttataaaccttgtctgacccatatagattaatcctactaactctattctcctttggggtta |
253567 |
T |
|
| Q |
417 |
tatactttctaatctcctcagtgacnnnnnnnttaatcaaaggatcctcttttactgtggagtttcctctttcttcaaactttggaagtctaatctgtct |
516 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
253568 |
tatactttctaatctcctcagtgacaaaaaaattaatcaaaggatcctcttttactgtggagtttcctctttcttcaaactttggaagtctaatctgtct |
253667 |
T |
|
| Q |
517 |
taaagcaacattagcactgtgaagaggcctaactatttcatcctctaaatatttcttatctaaggttatgctcttgtttttctccatttcttgttc |
612 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
253668 |
taaagcaacattagcactatgaagaggcctaactatttcatcctctaaatatttcttatctaaggttatgctcttgtttttctccatttcttgttc |
253763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University