View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13983_low_20 (Length: 390)
Name: NF13983_low_20
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13983_low_20 |
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| [»] scaffold0071 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 378
Target Start/End: Complemental strand, 11439596 - 11439235
Alignment:
| Q |
17 |
atcaaggattttggattggcacaagaattctccaaggtgttttatcttgtcaaaagaactttcaagcccttaatacagatatcctcttagttaccactcc |
116 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11439596 |
atcaaggattttggattggcacgagaattcttcaaggtgttttatcttgtcaaaaacactttcaagcccttaatacagatatcctcttagttaccactcc |
11439497 |
T |
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| Q |
117 |
caaatcaggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaaaatatcaaaatattcataatatcaatcatcctttgctcactaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| || |
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| T |
11439496 |
caaatcaggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaaaatatcaaaatattcataatttcaatcatcctttactcacttca |
11439397 |
T |
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| Q |
217 |
aaccctcatgttcttgttcccttcttggaggttgacctatactatgataaagattatgttcctaacctcaattcattatcccctccaagactctttgcaa |
316 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11439396 |
aaccctcatgttcttgtccccttcttggaggttgacctttactatgataaagattatgttcctaacctcaattcattatcccctccaagactctttgcaa |
11439297 |
T |
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| Q |
317 |
cacacattccatatgatttgttgccaaaatctgtaaaagagtcaagttgtaagatggtttat |
378 |
Q |
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| T |
11439296 |
cacacattccatatgagttgttgccaaaatctgtaaaagagtcaagttgtaaggtggtttat |
11439235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 11318020 - 11317891
Alignment:
| Q |
17 |
atcaaggattttggattggcacaagaattctccaaggtgttttatcttgtcaaaagaactttcaagcccttaatacagatatcctcttagttaccactcc |
116 |
Q |
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| T |
11318020 |
atcaaggattttggcttaccacaaggattctccaaggtactttatcttgtcataagcaatttcaagcccttgatactgatatcctcatagttaccactcc |
11317921 |
T |
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| Q |
117 |
caaatcaggtaccacttggctcaaagcatt |
146 |
Q |
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| T |
11317920 |
aaaagcaggcaccacttggcttaaagcatt |
11317891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 246
Target Start/End: Original strand, 15460773 - 15460897
Alignment:
| Q |
122 |
caggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaaaatatcaaaatattcataatatcaatcatcctttgctcactacaaaccc |
221 |
Q |
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| T |
15460773 |
caggtaccacttggctcaaagcattgattttcgccttgctcaaccgtaagagatatccaaatattcatgataacaaccatcctttgctcactaccaaccc |
15460872 |
T |
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| Q |
222 |
tcatgttcttgttcccttcttggag |
246 |
Q |
| |
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| T |
15460873 |
tcatgttcttgttcctttcttggag |
15460897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 15460438 - 15460487
Alignment:
| Q |
49 |
caaggtgttttatcttgtcaaaagaactttcaagcccttaatacagatat |
98 |
Q |
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| T |
15460438 |
caaggagttttatcttttcaaaagcactttcaagcccatgatacagatat |
15460487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 17 - 361
Target Start/End: Complemental strand, 27499566 - 27499225
Alignment:
| Q |
17 |
atcaaggattttggattggcacaagaattctccaaggtgttttatcttgtcaaaagaactttcaagcccttaatacagatatcctcttagttaccactcc |
116 |
Q |
| |
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|||||||||||||||||| ||||| || | |||||||||||||||||||| ||| ||||||||||||| || |||||||| ||||||||||| |||| |
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| T |
27499566 |
atcaaggattttggattgccacaaaaaaatttcaaggtgttttatcttgtcagaagcactttcaagccctagattcagatatcatcttagttaccgctcc |
27499467 |
T |
|
| Q |
117 |
caaatcaggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaaaatatcaaaatattcataatatcaatcatcctttgctcactaca |
216 |
Q |
| |
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|||||||||||||||||||||||||||||| || |||||||| |||||||||| ||||||| || ||||||||| ||| ||||||||||||| | | |
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| T |
27499466 |
caaatcaggtaccacttggctcaaagcattgacttttgctttgctaaaccgcaacaaatatccaattattcataa---caaccatcctttgctcatttcc |
27499370 |
T |
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| Q |
217 |
aaccctcatgttcttgttcccttcttggaggttgacctatactatgataaagattatgttcctaacctcaattcattatcccctccaagactctttgcaa |
316 |
Q |
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|| || ||| ||||||||||||||||||| ||||||| ||| ||||||||| |||||||||||||| || || ||||| | |||||||||||| | | |
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| T |
27499369 |
aatccccattctcttgttcccttcttggagattgacctttacagtgataaagactatgttcctaaccttaactctttatctcatccaagactcttctcca |
27499270 |
T |
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| Q |
317 |
cacacattccatatgatttgttgccaaaatctgtaaaagagtcaa |
361 |
Q |
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|||| ||||| | || |||||||||||||||||| ||||| |||| |
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| T |
27499269 |
cacatattccttgtgctttgttgccaaaatctgtgaaagaatcaa |
27499225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 43 - 359
Target Start/End: Original strand, 27504380 - 27504693
Alignment:
| Q |
43 |
attctccaaggtgttttatcttgtcaaaagaactttcaagcccttaatacagatatcctcttagttaccactcccaaatcaggtaccacttggctcaaag |
142 |
Q |
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||||||||||||| |||||||| ||||||| ||||||||||| || |||||||||| |||||||||| | ||||||||||||||||||||||||||||| |
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| T |
27504380 |
attctccaaggtgctttatcttttcaaaagcactttcaagccattgatacagatattatcttagttacaaatcccaaatcaggtaccacttggctcaaag |
27504479 |
T |
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| Q |
143 |
cattaacctttgctttaataaaccgcaaaaaatatcaaaatattcataatatcaatcatcctttgctcactacaaaccctcatgttcttgttcccttctt |
242 |
Q |
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|||| || |||||||| |||||||| || ||||||| |||||||||||| ||||||||||| |||||| | |||||||||||||||||||| ||| | |
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| T |
27504480 |
cattgacttttgctttgataaaccgtaacaaatatccaaatattcataa---aaatcatcctttactcacttccaaccctcatgttcttgttcctttcat |
27504576 |
T |
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| Q |
243 |
ggaggttgacctatactatgataaagattatgttcctaacctcaattcattatcccctccaagactctttgcaacacacattccatatgatttgttgcca |
342 |
Q |
| |
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|||| || |||| |||||||| | ||| ||||||| | ||||||||| |||||||||||||| |||| | ||||||| ||| |||| |||||||||| |
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| T |
27504577 |
ggagattaacctttactatgaaactgatattgttcctgaactcaattcactatcccctccaagaatcttctccacacacaatccttatgttttgttgcca |
27504676 |
T |
|
| Q |
343 |
aaatctgtaaaagagtc |
359 |
Q |
| |
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|||||| | |||||||| |
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| T |
27504677 |
aaatctttgaaagagtc |
27504693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 246
Target Start/End: Complemental strand, 1419 - 1295
Alignment:
| Q |
122 |
caggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaaaatatcaaaatattcataatatcaatcatcctttgctcactacaaaccc |
221 |
Q |
| |
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||||||||||||||||||||||||| | || || || | ||||| || | ||||| |||||||||| ||| ||| ||||||||||||||||| ||||| |
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| T |
1419 |
caggtaccacttggctcaaagcattgattttcgccttgctcaaccgtaagagatatccaaatattcatgataacaaccatcctttgctcactaccaaccc |
1320 |
T |
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| Q |
222 |
tcatgttcttgttcccttcttggag |
246 |
Q |
| |
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||||||||||||||| ||||||||| |
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| T |
1319 |
tcatgttcttgttcctttcttggag |
1295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 1754 - 1705
Alignment:
| Q |
49 |
caaggtgttttatcttgtcaaaagaactttcaagcccttaatacagatat |
98 |
Q |
| |
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||||| |||||||||| ||||||| |||||||||||| | |||||||||| |
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| T |
1754 |
caaggagttttatcttttcaaaagcactttcaagcccatgatacagatat |
1705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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