View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13983_low_23 (Length: 349)

Name: NF13983_low_23
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13983_low_23
NF13983_low_23
[»] chr3 (12 HSPs)
chr3 (1-346)||(679239-679585)
chr3 (100-346)||(751046-751290)
chr3 (1-102)||(747402-747503)
chr3 (1-95)||(7324687-7324781)
chr3 (102-262)||(2632504-2632659)
chr3 (23-95)||(9566094-9566166)
chr3 (42-98)||(9594898-9594954)
chr3 (10-95)||(2491786-2491871)
chr3 (23-87)||(754888-754952)
chr3 (1-95)||(9562235-9562329)
chr3 (46-95)||(2476377-2476426)
chr3 (1-86)||(7443269-7443354)


Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 679585 - 679239
Alignment:
Q  1 ttgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatcccacatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679585 ttgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatcccacatta 679486  T
Q  101 tttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679485 tttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatca 679386  T
Q  201 tatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttca-nnnnnnnnnn 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||               
T  679385 tatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatgtagttatatgcctcattttcattttttttttt 679286  T
Q  300 ctttctagttcttagaattagaagaatgctgcgtatatttgagtatt 346  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  679285 ctttctagttctgagaattagaagaatgctgcgtatatttgagtatt 679239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 100 - 346
Target Start/End: Complemental strand, 751290 - 751046
Alignment:
Q  100 atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  751290 atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc 751191  T
Q  200 atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttcannnnnnnnnn 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||              
T  751190 atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttctatgcctcattttcatttattttt- 751092  T
Q  300 ctttctagttcttagaattagaagaatgctgcgtatatttgagtatt 346  Q
     ||||||||||||||||||||||||||||||||||||||||||||||    
T  751091 -tttctagttcttagaattagaagaatgctgcgtatatttgagtatt 751046  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 747503 - 747402
Alignment:
Q  1 ttgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatcccacatta 100  Q
    |||||||  ||||||| |||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  747503 ttgataattataaggtcgttgttgtttcttcagaaaaagaggttttttttaatactttgggggctgattattggaaaagaatagagggcatcccacatta 747404  T
Q  101 tt 102  Q
    ||    
T  747403 tt 747402  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 7324781 - 7324687
Alignment:
Q  1 ttgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatccca 95  Q
    |||||||  |||||||  |||||||||||||  ||||  | ||| |||||||||||||||||  ||||||||||||||||||||||| |||||||    
T  7324781 ttgataactataaggtcattgttgtttcttccaaaaataaagttagtgttaatactttggggactgattattggacaagaatagaggacatccca 7324687  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 2632504 - 2632659
Alignment:
Q  102 ttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcag----attctttcaacacttgctcttttgattatcatagta 197  Q
    |||||||||||||||||||||||| |||||||||| ||     |||||||||||||||||     |||||||| |||| | |||||  ||||||||||      
T  2632504 ttcaattctccaaaccctgcagttttaaaatcagcaca----ttgttttgtgaagatcaggtcttttctttcaccactcgttctttgtattatcatag-- 2632597  T
Q  198 tcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagttt 262  Q
    ||||| ||||||||||||| | || |||||   | |||||||||| | |||||||||||||||||    
T  2632598 tcatacacttcacatgtgtgtgaataattc---atatttagctttttgaaacttatagtgagttt 2632659  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 9566166 - 9566094
Alignment:
Q  23 tgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatccca 95  Q
    ||||||| || |||| || ||| ||||| |||||||||||  ||||||||||||||||||||||| |||||||    
T  9566166 tgtttctacaaaaaatgaagttagtgtttatactttggggactgattattggacaagaatagaggacatccca 9566094  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 9594954 - 9594898
Alignment:
Q  42 gtttgtgttaatactttgggggatgattattggacaagaatagagggcatcccacat 98  Q
    |||| |||| |||||||||||  ||||||||||||||||||||||| ||||||||||    
T  9594954 gtttttgtttatactttggggactgattattggacaagaatagaggacatcccacat 9594898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 2491786 - 2491871
Alignment:
Q  10 ataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatccca 95  Q
    |||||||  ||| ||||||||| ||||| || ||| ||||| |||||||||||  ||||||||||||||||||  ||| |||||||    
T  2491786 ataaggtcattggtgtttcttccgaaaatgaagttagtgtttatactttggggactgattattggacaagaatcaaggacatccca 2491871  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 754952 - 754888
Alignment:
Q  23 tgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagg 87  Q
    ||||||| || |||| || ||||||||| |||| ||||||  |||||||||||||||||||||||    
T  754952 tgtttctacaaaaaatgaagtttgtgtttatacattggggactgattattggacaagaatagagg 754888  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 9562329 - 9562235
Alignment:
Q  1 ttgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatccca 95  Q
    |||||||  |||||||  ||||||||||| |  |||| || ||| ||||| |||||||||||  |||||||||||  |||||||||| |||||||    
T  9562329 ttgataattataaggtcattgttgtttctaccaaaaatgaagttagtgtttatactttggggactgattattggaagagaatagaggacatccca 9562235  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 2476377 - 2476426
Alignment:
Q  46 gtgttaatactttgggggatgattattggacaagaatagagggcatccca 95  Q
    |||||||||||||||||  ||||||||||||||||||  ||| |||||||    
T  2476377 gtgttaatactttggggactgattattggacaagaatgcaggacatccca 2476426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 7443354 - 7443269
Alignment:
Q  1 ttgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagag 86  Q
    |||||||  |||| ||||||| | |||||||  || | ||||||| ||||||| ||||||||  ||||||||||| ||||||||||    
T  7443354 ttgataattataaagttgttgctatttcttccaaatatgaggtttttgttaatgctttggggactgattattggagaagaatagag 7443269  T

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