View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13983_low_26 (Length: 283)
Name: NF13983_low_26
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13983_low_26 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 14 - 283
Target Start/End: Complemental strand, 41942727 - 41942458
Alignment:
| Q |
14 |
aataagttggatatggaattggaaattcattgtcatataaacctttacacgattctattaacaaaaatgacacgttacttaattctggcaaggacattag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41942727 |
aataagttggatatggaattggaaattcattgtcatataaacctttacacgattctattaacaaaaatgacacgttacttaattctggcaaggacattag |
41942628 |
T |
|
| Q |
114 |
ctttgttccaaaatcatcatccaaatcaccttctctcctaaaatcacaaccaattcttccaccaaccatgaaatgatctttaccatgaaatcttttccac |
213 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41942627 |
ctttgttccaaaatcatcatccaaatctccttctctcctaaaatcacaaccaattcttccaccaaccatgaaatgatctttaccatgcaatcttttccac |
41942528 |
T |
|
| Q |
214 |
ggagattgttgtgctaaccatttcacaaattcatttggtgatttatctatcatggaaatattaaattccc |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41942527 |
tgagattgttgtgctaaccatttcacaaattcatttggtgatttatctatcatggaaatattaaattccc |
41942458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 283
Target Start/End: Complemental strand, 41948241 - 41947972
Alignment:
| Q |
14 |
aataagttggatatggaattggaaattcattgtcatataaacctttacacgattctattaacaaaaatgacacgttacttaattctggcaaggacattag |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||| ||||||| |
|
|
| T |
41948241 |
aataagttggatatggaattggaaattcattgtcatataaacctttacatgattctattaacaaaaatgacatgttacttacttctggcaagaacattag |
41948142 |
T |
|
| Q |
114 |
ctttgttccaaaatcatcatccaaatcaccttctctcctaaaatcacaaccaattcttccaccaaccatgaaatgatctttaccatgaaatcttttccac |
213 |
Q |
| |
|
||||||||| ||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41948141 |
ctttgttccccaattatgatctgaatcaccttctctcctaaaatcacaaccaattcttccaccaaccatgaaatgatctttaccatgcaatcttttccac |
41948042 |
T |
|
| Q |
214 |
ggagattgttgtgctaaccatttcacaaattcatttggtgatttatctatcatggaaatattaaattccc |
283 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
41948041 |
tgagattgttgtcctaaccatttcacaaattcatttggtgatttatctctaatggaaatattaaattccc |
41947972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 107 - 279
Target Start/End: Complemental strand, 22794651 - 22794479
Alignment:
| Q |
107 |
acattagctttgttccaaaatcatcatccaaatcaccttctctcctaaaatcacaaccaattcttccaccaaccatgaaatgatctttaccatgaaatct |
206 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||| | | |||||||||||||| | |||| |||||||||||||||||||||||| ||||||| | || |
|
|
| T |
22794651 |
acattagctttgttccccaatcttcatctttatcgcttcctctcctaaaatcatatccaactcttccaccaaccatgaaatgatccttaccatacattcg |
22794552 |
T |
|
| Q |
207 |
tttccacggagattgttgtgctaaccatttcacaaattcatttggtgatttatctatcatggaaatattaaat |
279 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||| ||| || |||| |||| | ||||||||||||||| |
|
|
| T |
22794551 |
tttccattgagattgttgtgctaaccatttcactaattgattcggcgattcatctcttatggaaatattaaat |
22794479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 22794756 - 22794716
Alignment:
| Q |
14 |
aataagttggatatggaattggaaattcattgtcatataaa |
54 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
22794756 |
aataagttggatatggaattgcaaattcattctcatataaa |
22794716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 283
Target Start/End: Complemental strand, 1210994 - 1210726
Alignment:
| Q |
14 |
aataagttggatatggaattggaaattcattgtcatataaacctttacacgattctattaacaaaaatgacacgttacttaattctggcaaggacattag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| |||||||||| ||||||| |
|
|
| T |
1210994 |
aataagttggatatggaattggaaattcattgtcatataaacatttacatgattctattaacaaaaatgacatgttacttacttctggcaagaacattag |
1210895 |
T |
|
| Q |
114 |
ctttgttccaaaatcatcatccaaatcaccttctctcctaaaatcacaaccaattcttccaccaaccatgaaatgatctttaccatgaaatcttttccac |
213 |
Q |
| |
|
||||||||| ||| || ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1210894 |
ctttgttccccaattatgatctaaatcaccttctctccaaaaatcacaaccaattcttccaccaaccatgaaatgatctttaccatgcaatcttttccac |
1210795 |
T |
|
| Q |
214 |
ggagattgttgtgctaaccatttcacaaattcatttggtgatttatctatcatggaaatattaaattccc |
283 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1210794 |
tgagattgttgtgctaaccatttcac-aattcatttggtgatttatctctcatggaaatattaaattccc |
1210726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 151 - 279
Target Start/End: Original strand, 54180539 - 54180667
Alignment:
| Q |
151 |
ctaaaatcacaaccaattcttccaccaaccatgaaatgatctttaccatgaaatcttttccacggagattgttgtgctaaccatttcacaaattcatttg |
250 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||| ||||||| | ||||||||| ||| ||||||||||||||||||||| |||| |||| |
|
|
| T |
54180539 |
ctaaaatcataacttattcttccaccaaccatgaaatgatccttaccatatactcttttccattgaggttgttgtgctaaccatttcactaatttttttg |
54180638 |
T |
|
| Q |
251 |
gtgatttatctatcatggaaatattaaat |
279 |
Q |
| |
|
|||||| |||| | || |||| ||||||| |
|
|
| T |
54180639 |
gtgattcatctcttattgaaacattaaat |
54180667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University