View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13983_low_28 (Length: 277)
Name: NF13983_low_28
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13983_low_28 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 277
Target Start/End: Original strand, 6819326 - 6819591
Alignment:
| Q |
12 |
agagacatggccaaagttctaatttttgtattagttttactccaagtaagctctttggcagtgtttgctaaagagtttaatactcctcactaccttcctc |
111 |
Q |
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| T |
6819326 |
agagacatggccaaagtcctaatttttgtattagttttactccaagtaagctctttggcagtgtttgctaaagagtttaatactcctcactaccttcctc |
6819425 |
T |
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| Q |
112 |
gccaacacccaccaaccccaacccctgctcctgttgaaccaccttattcctcctttattcaatctctcagtctagaccagtctcacattgattaccacca |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6819426 |
gccaacacccaccaaccccaacccctgctcctgttgaaccaccatattcctcctttcttcaatctctcagtctagaccagtctcacattgattaccacca |
6819525 |
T |
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| Q |
212 |
ccatcctcttcctcacccatcaccccttcctccttttaaacaaccatcttcttcccatattcaatc |
277 |
Q |
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| T |
6819526 |
ccatcctcttcctcacccatcaccccttcctccttttaaacaaccatcttcttcccatattcaatc |
6819591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 167 - 277
Target Start/End: Original strand, 6819583 - 6819693
Alignment:
| Q |
167 |
tattcaatctctcagtctagaccagtctcacattgattaccaccaccatcctcttcctcacccatcaccccttcctccttttaaacaaccatcttcttcc |
266 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||| |
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| T |
6819583 |
tattcaatctctcagtctagaccactctcacattgattaccactaccatcctcttcctcatccatcaccccttcctccttttcaaccaccatcttcttcc |
6819682 |
T |
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| Q |
267 |
catattcaatc |
277 |
Q |
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| T |
6819683 |
catattcaatc |
6819693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 6819685 - 6819753
Alignment:
| Q |
167 |
tattcaatctctcagtctagaccagtctcacattgattaccaccaccatcctcttcctcacccatcacc |
235 |
Q |
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||||||||||||||||||| | || ||||||||||||||||| |||||||||| || ||||||||||| |
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| T |
6819685 |
tattcaatctctcagtctaaatcatcctcacattgattaccactaccatcctctcccacacccatcacc |
6819753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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