View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13983_low_3 (Length: 618)

Name: NF13983_low_3
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13983_low_3
NF13983_low_3
[»] chr4 (2 HSPs)
chr4 (18-603)||(52351005-52351585)
chr4 (461-592)||(20297086-20297217)
[»] chr5 (25 HSPs)
chr5 (347-562)||(30474744-30474959)
chr5 (58-193)||(30399150-30399283)
chr5 (456-587)||(29871658-29871789)
chr5 (457-592)||(30749116-30749251)
chr5 (456-592)||(30242867-30243003)
chr5 (432-592)||(30522117-30522277)
chr5 (432-592)||(30562457-30562617)
chr5 (457-592)||(30399550-30399685)
chr5 (496-592)||(30430467-30430563)
chr5 (18-82)||(30474420-30474484)
chr5 (456-592)||(30482876-30483012)
chr5 (456-592)||(30713917-30714053)
chr5 (146-193)||(29852470-29852517)
chr5 (146-193)||(29871357-29871404)
chr5 (146-193)||(30059528-30059575)
chr5 (146-193)||(30339410-30339457)
chr5 (457-542)||(17982400-17982485)
chr5 (467-504)||(30206008-30206045)
chr5 (148-193)||(30482577-30482622)
chr5 (456-592)||(17418652-17418788)
chr5 (369-401)||(17418846-17418878)
chr5 (65-121)||(30205602-30205658)
chr5 (369-401)||(30243049-30243081)
chr5 (149-193)||(30243257-30243301)
chr5 (369-401)||(30399459-30399491)
[»] chr7 (2 HSPs)
chr7 (457-592)||(26706817-26706952)
chr7 (148-193)||(26706505-26706550)
[»] chr1 (2 HSPs)
chr1 (456-588)||(7098896-7099028)
chr1 (457-522)||(7582284-7582349)


Alignment Details
Target: chr4 (Bit Score: 549; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 18 - 603
Target Start/End: Original strand, 52351005 - 52351585
Alignment:
Q  18 ggaaggaattgcaacacaagtttagggcaaccacaaatggtcaaatcagaaagacgagggaacatctcccccctttccattttcaataaccgttcaaagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||    
T  52351005 ggaaggaattgcaacacaagtttagggcaaccacaaatggtcaaatcagaaagacg---gaacatctcccgcctttccattttcaataaccgttcaaagt 52351101  T
Q  118 ttggcaaacctagtaacgagacactttttccagagatgggaaaaccctcacccccacaccatcgtgagattcatcaacgtccacataccgcacctcatcc 217  Q
    |||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52351102 ttggcaaacctagtaatgagac--tttttccagagatgggaaaaccctcacccccacaccatcgtgagattcatcaacgtccacataccgcacctcatcc 52351199  T
Q  218 atattgcttaaaatgagttgttttagaaatggtagtttaccaaatggtggaaattgcacacagttcttgcaggacctaagttcaaggtaaactaaacaat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52351200 atattgcttaaaatgagttgttttagaaatggtagtttaccaaatggtggaaattgcacacagttcttgcaggacctaagttcaaggtaaactaaacaat 52351299  T
Q  318 tatgaatctcaatccagcttggaaaatacaatccttcatagtgaagaattctcaaacacttgagatttgagtgaggttgaagcagatgaagtacttcaat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52351300 tatgaatctcaatccagcttggaaaatacaatccttcatagtgaagaattctcaaacacttgagatttgagtgaggttgaagcagatgaagtacttcaat 52351399  T
Q  418 agcattattggcacgtgtcttagttttaccacttttgctccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatca 517  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52351400 agcattattggcacgtgtcttagttttaccactgttgctccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatca 52351499  T
Q  518 gataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaagttgtgccccgt 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52351500 gataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaagttgtgccccgt 52351585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 461 - 592
Target Start/End: Complemental strand, 20297217 - 20297086
Alignment:
Q  461 gacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttc 560  Q
    |||| |||||||||  | |||||||||||||||||||||||||| ||| || | |||||||  |||| ||||| || || |||||  || ||||||||||    
T  20297217 gacaagcataattcatgaaggtcttttttacccatcaaattggcttcttgagcttcagatatactgccaacatcttttaagcctttgatactcagttttc 20297118  T
Q  561 cttctagctttagatcacgtaactctgccaag 592  Q
    |  | || ||||||||||||||||||| ||||    
T  20297117 caccaagttttagatcacgtaactctgtcaag 20297086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 347 - 562
Target Start/End: Original strand, 30474744 - 30474959
Alignment:
Q  347 aatccttcatagtgaagaattctcaaacacttgagatttgagtgaggttgaagcagatgaagtacttcaatagcattattggcacgtgtcttagttttac 446  Q
    ||||| ||||||| ||| ||| |||| | ||||||||||||||||||||||||||  | ||||||||    |||| || | |   |||||| ||||| ||    
T  30474744 aatccgtcatagtaaagtattttcaacctcttgagatttgagtgaggttgaagcatttcaagtacttgctcagcagtagtagttggtgtctcagtttcac 30474843  T
Q  447 cacttttgctccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttc 546  Q
    || | || |||||||||| | |||||||| ||||||| |||||||||||||||||||| | |||| | ||| ||||||| | ||||||| | || ||||     
T  30474844 cattattcctccatgacaaggataattcttggaggtcctttttacccatcaaattggcatgtcgagcttcaaataagctaccaacatttcccagaccttg 30474943  T
Q  547 aatgctcagttttcct 562  Q
     |||||||||||||||    
T  30474944 tatgctcagttttcct 30474959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 58 - 193
Target Start/End: Original strand, 30399150 - 30399283
Alignment:
Q  58 tcaaatcagaaagacgagggaacatctcccccctttccattttcaataaccgttcaaagtttggcaaacctagtaacgagacactttttccagagatggg 157  Q
    |||| |||||||||| ||| ||||||||||| ||||||| |||||||||||  || | |||||| |  | ||||||   ||   ||  ||||||||||||    
T  30399150 tcaactcagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttggtaggcatagtaaatggag--ttcctccagagatggg 30399247  T
Q  158 aaaaccctcacccccacaccatcgtgagattcatca 193  Q
    |||||||||||| |||||||||| ||||||||||||    
T  30399248 aaaaccctcacctccacaccatcctgagattcatca 30399283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 456 - 587
Target Start/End: Original strand, 29871658 - 29871789
Alignment:
Q  456 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 555  Q
    ||||||||| ||||||||   | ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | ||  ||||| || |||||    
T  29871658 tccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatccttcgatactcag 29871757  T
Q  556 ttttccttctagctttagatcacgtaactctg 587  Q
    ||||||  | || |||||||||||||||||||    
T  29871758 ttttccaccgagttttagatcacgtaactctg 29871789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 457 - 592
Target Start/End: Original strand, 30749116 - 30749251
Alignment:
Q  457 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagt 556  Q
    |||||||| |||||||||  | ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | ||  ||||  || ||||||    
T  30749116 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatcctttgatactcagt 30749215  T
Q  557 tttccttctagctttagatcacgtaactctgccaag 592  Q
    |||||  | || ||||||||||||||||||| ||||    
T  30749216 tttccaccgaggtttagatcacgtaactctgtcaag 30749251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 456 - 592
Target Start/End: Complemental strand, 30243003 - 30242867
Alignment:
Q  456 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 555  Q
    ||||||||| |||||||||  | ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | || |  ||  || |||||    
T  30243003 tccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaagtgttggatactcag 30242904  T
Q  556 ttttccttctagctttagatcacgtaactctgccaag 592  Q
    ||||||  | || ||||||||||||||||||| ||||    
T  30242903 ttttccaccgaggtttagatcacgtaactctgtcaag 30242867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 592
Target Start/End: Complemental strand, 30522277 - 30522117
Alignment:
Q  432 gtgtcttagttttaccacttttgctccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaac 531  Q
    ||||||| |||||||  || ||| ||||||| | ||||| |||  | || ||||||||| | |||| |||||| |||||| | ||||| || || | |||    
T  30522277 gtgtcttggttttacgcctgttgttccatgagaagcatatttcctgaagttcttttttatctatcagattggcttctcgagcttcagacaaacttccaac 30522178  T
Q  532 attttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaag 592  Q
    |||||||||||    |||||| ||||||||  |||||||||||||| |||| |||||||||    
T  30522177 attttctaggcaagtaatgcttagttttccccctagctttagatcatgtaattctgccaag 30522117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 592
Target Start/End: Complemental strand, 30562617 - 30562457
Alignment:
Q  432 gtgtcttagttttaccacttttgctccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaac 531  Q
    ||||||| |||||||  || ||| ||||||| | ||||| |||  | || ||||||||| | |||| |||||| |||||| | ||||| || || | |||    
T  30562617 gtgtcttggttttacgcctgttgttccatgagaagcatatttcctgaagttcttttttatctatcagattggcttctcgagcttcagacaaacttccaac 30562518  T
Q  532 attttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaag 592  Q
    |||||||||||    |||||| ||||||||  |||||||||||||| |||| |||||||||    
T  30562517 attttctaggcaagtaatgcttagttttccccctagctttagatcatgtaattctgccaag 30562457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 457 - 592
Target Start/End: Original strand, 30399550 - 30399685
Alignment:
Q  457 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagt 556  Q
    |||||||| |||||||||  | ||||||||||||||||||||||  ||| || || | | |||||| |||| || || || || |||||| || | ||||    
T  30399550 ccatgacaagcataattcatgaaggtcttttttacccatcaaatcagccgcttgagcttgagataaactgccaaaatcttttaagccttcgatacgcagt 30399649  T
Q  557 tttccttctagctttagatcacgtaactctgccaag 592  Q
    |||||  | || ||||||||||||||||||| ||||    
T  30399650 tttccaccgaggtttagatcacgtaactctgacaag 30399685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 592
Target Start/End: Original strand, 30430467 - 30430563
Alignment:
Q  496 caaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaag 592  Q
    |||||| || |||||| | ||||| || || | |||||||||||| | |  |||||| ||||||||| |||||||||||||| |||| |||||||||    
T  30430467 caaatttgcttctcgagcttcagacaaacttccaacattttctagacatgtaatgcttagttttcctcctagctttagatcatgtaattctgccaag 30430563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 30474420 - 30474484
Alignment:
Q  18 ggaaggaattgcaacacaagtttagggcaaccacaaatggtcaaatcagaaagacgagggaacat 82  Q
    |||||| || |||||||||||||||||||| ||  ||||||||||| ||||||| || |||||||    
T  30474420 ggaaggcatggcaacacaagtttagggcaatcaataatggtcaaattagaaagaagaaggaacat 30474484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 456 - 592
Target Start/End: Original strand, 30482876 - 30483012
Alignment:
Q  456 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 555  Q
    ||||||||| |||||||||  | ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | ||  ||||  ||   |||    
T  30482876 tccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacattgtttaatccttggatatgcag 30482975  T
Q  556 ttttccttctagctttagatcacgtaactctgccaag 592  Q
    ||||||  | || ||||||||||||||||||| ||||    
T  30482976 ttttccaccgaggtttagatcacgtaactctgtcaag 30483012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 456 - 592
Target Start/End: Complemental strand, 30714053 - 30713917
Alignment:
Q  456 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 555  Q
    ||||||||| | |||||||  | ||||||||||||||||||||||| ||| ||  | | ||| |||| |||| |||||| | ||  ||||  || |||||    
T  30714053 tccatgacaagtataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcaaataaactgccaacattgtttaatcctttgatactcag 30713954  T
Q  556 ttttccttctagctttagatcacgtaactctgccaag 592  Q
    ||||||  | || ||||||||||||||||||| ||||    
T  30713953 ttttccaccgaggtttagatcacgtaactctgtcaag 30713917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 29852470 - 29852517
Alignment:
Q  146 tccagagatgggaaaaccctcacccccacaccatcgtgagattcatca 193  Q
    |||||||||||||||||||||||| ||| |||||| | ||||||||||    
T  29852470 tccagagatgggaaaaccctcacctccataccatcctcagattcatca 29852517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 29871357 - 29871404
Alignment:
Q  146 tccagagatgggaaaaccctcacccccacaccatcgtgagattcatca 193  Q
    |||||||||||||||| ||||||| ||| |||||| ||||||||||||    
T  29871357 tccagagatgggaaaatcctcacctccataccatcctgagattcatca 29871404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 30059528 - 30059575
Alignment:
Q  146 tccagagatgggaaaaccctcacccccacaccatcgtgagattcatca 193  Q
    |||||||||||||||||||||||| ||| |||||| | ||||||||||    
T  30059528 tccagagatgggaaaaccctcacctccataccatcctcagattcatca 30059575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 30339457 - 30339410
Alignment:
Q  146 tccagagatgggaaaaccctcacccccacaccatcgtgagattcatca 193  Q
    |||||||||||||||||||||||| ||| |||||| | ||||||||||    
T  30339457 tccagagatgggaaaaccctcacctccataccatcctcagattcatca 30339410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 542
Target Start/End: Original strand, 17982400 - 17982485
Alignment:
Q  457 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggc 542  Q
    ||||||||||||||||||   ||||||||||||||| || ||||| || |||  ||| |||||||| || || ||||||| |||||    
T  17982400 ccatgacaggcataattcattgaggtcttttttacctataaaatttgcttcttcaacttcagataaactactgacattttgtaggc 17982485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 504
Target Start/End: Original strand, 30206008 - 30206045
Alignment:
Q  467 cataattctcggaggtcttttttacccatcaaattggc 504  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  30206008 cataattcctggaggtcttttttacccatcaaattggc 30206045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 30482577 - 30482622
Alignment:
Q  148 cagagatgggaaaaccctcacccccacaccatcgtgagattcatca 193  Q
    ||||||| |||||||| ||||| |||||||||| ||||||||||||    
T  30482577 cagagatcggaaaaccatcacctccacaccatcctgagattcatca 30482622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 592
Target Start/End: Complemental strand, 17418788 - 17418652
Alignment:
Q  456 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 555  Q
    |||| |||| |||||||||| |||||||||||||||| ||||| || || ||| || | ||||||||  | | ||||| || || |||||  || ||||     
T  17418788 tccacgacaagcataattcttggaggtcttttttacctatcaacttagcttcttgagcttcagataaattaccaacatcttttaagcctttgatactcaa 17418689  T
Q  556 ttttccttctagctttagatcacgtaactctgccaag 592  Q
    ||||||  | || |||||||||| ||||||| |||||    
T  17418688 ttttccaccgaggtttagatcacctaactctaccaag 17418652  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 369 - 401
Target Start/End: Complemental strand, 17418878 - 17418846
Alignment:
Q  369 tcaaacacttgagatttgagtgaggttgaagca 401  Q
    |||| ||||||||||||||||||||||||||||    
T  17418878 tcaagcacttgagatttgagtgaggttgaagca 17418846  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 30205602 - 30205658
Alignment:
Q  65 agaaagacgagggaacatctcccccctttccattttcaataaccgttcaaagtttgg 121  Q
    |||||||| ||| |||||||| || ||||||| ||||||||||| ||| ||||||||    
T  30205602 agaaagacaaggaaacatctcacctctttccactttcaataacccttctaagtttgg 30205658  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 369 - 401
Target Start/End: Complemental strand, 30243081 - 30243049
Alignment:
Q  369 tcaaacacttgagatttgagtgaggttgaagca 401  Q
    |||| ||||||||||||||||||||||||||||    
T  30243081 tcaagcacttgagatttgagtgaggttgaagca 30243049  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 30243301 - 30243257
Alignment:
Q  149 agagatgggaaaaccctcacccccacaccatcgtgagattcatca 193  Q
    ||||||||||||||||||||| ||| |||||| | ||||||||||    
T  30243301 agagatgggaaaaccctcacctccataccatcctcagattcatca 30243257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 369 - 401
Target Start/End: Original strand, 30399459 - 30399491
Alignment:
Q  369 tcaaacacttgagatttgagtgaggttgaagca 401  Q
    |||| ||||||||||||||||||||||||||||    
T  30399459 tcaagcacttgagatttgagtgaggttgaagca 30399491  T

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Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 457 - 592
Target Start/End: Original strand, 26706817 - 26706952
Alignment:
Q  457 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagt 556  Q
    |||||||| |||||||| |  ||||| |||||| |||||||||||||| ||| || | |||||||| |||| ||||| || || |||||| || ||||||    
T  26706817 ccatgacaagcataatttttcgaggttttttttccccatcaaattggcttcttgagcttcagataaactgccaacatcttttaagccttcgatactcagt 26706916  T
Q  557 tttccttctagctttagatcacgtaactctgccaag 592  Q
    |||||  | || ||||||||||||||||||| ||||    
T  26706917 tttccaccgaggtttagatcacgtaactctgtcaag 26706952  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 26706505 - 26706550
Alignment:
Q  148 cagagatgggaaaaccctcacccccacaccatcgtgagattcatca 193  Q
    |||||||||||||||||||||| |||  ||||| ||||||||||||    
T  26706505 cagagatgggaaaaccctcacctccatgccatcctgagattcatca 26706550  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 456 - 588
Target Start/End: Original strand, 7098896 - 7099028
Alignment:
Q  456 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 555  Q
    ||||||||| |||||||||   |||||||||||||||||| |||||||| |||  | | |||||||| || | |||||||| || |||||  ||   |||    
T  7098896 tccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctccag 7098995  T
Q  556 ttttccttctagctttagatcacgtaactctgc 588  Q
     |||||| |||  ||||||||||||||||||||    
T  7098996 ctttcctcctaaatttagatcacgtaactctgc 7099028  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 522
Target Start/End: Complemental strand, 7582349 - 7582284
Alignment:
Q  457 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataa 522  Q
    |||||||| |||||||||   ||||||||||||||||||||| ||||| ||| || | ||||||||    
T  7582349 ccatgacaagcataattcatcgaggtcttttttacccatcaagttggcttcttgagcttcagataa 7582284  T

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